jgi.p|Nanoce1779_2|582884, mRNA_3646 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582884
Unique NamemRNA_3646
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1511
Alignment locationscaffold_6:851552..853343 -

Link to JBrowse

Properties
Property NameValue
TranscriptId582970
TrackFilteredModels2
ProteinId582884
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:851552..853343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582884gene_3646Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582884mRNA_3646-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3646CDS_3646Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3646 ID=mRNA_3646|Name=jgi.p|Nanoce1779_2|582884|organism=Nannochloropsis oceanica|type=mRNA|length=1511bp
ACAACAGGACTATACTCTTGACGGCATACGCACCCTGTCTACGACGGCTG
ATTCTCCTTCACCAGCAGCGTGGCTGAAGAGCCCAACATGCCGGGCACTC
AAAGCGCCGCGGCCCCGGCATTCATCGGGTTTGTCGCAGGAAGCGCGGCA
GTCATGACGCTGGTGGCCATCTACGATTTACTTGACCTTGGTCCCACGTA
CCGGGACCGGCAGCGGAAGAAGCGCAACTTATGTAGTAGTGGCGCTGGAG
GTGGTGGCAGCGGCAGTGACAGCGAGGGCTGCAGACCAATCCCCTCATTT
TTAACAGCCATGTACCTGTACGAACGAGAGATAGGGCTGGGAGAGGCTCT
TCCATCTACCCCTTTGAATGACGGGTTTCACATGCCGGCCGAATGGGAGC
ACCACGCGGGCTGCTGGATTCTCTTCCCTTGGCAGAAGGACAATTGGGAT
CACGATGCCGAGCCTGCACAGAAGGCTTATGCACATGTTGCCAATGCCAT
TCAACAGCACGGCAACGAGCAAGTCACGGTTGGGGTGCGTTCGGAGGATT
GGAGCGTAGCAAGGGCGTTGCTAAACCCGGCAGTGAGAGTGGTGGAGTTG
GGGTGTGATGATGCGTGGGTGCGGGATTCAGGGCCGACGTTCGTGGTAAA
GGATGACCAGGAGAAAGAGACGAGAGAGGTCCGAGGAGTTGATTGGAATT
TTAATGCATATGGTGGGAATTACGAGCCGTGTGAGAGGGATCAGTTGGTG
GCACGGAAGTTACTGGAGGTTGAGGGGGTGAGGAGGTATCATGCGCCGGT
CGTTATGGAGGGGGGGTCTTTCCATGTTGATGGGGAGGGCACGTGCATAG
TAACGGAGGAATGCCTGCTGCATCCATCAAGGAACCCGGGCTTGAGCAAG
GAGGAGATAGAAGAGTATTTGAAGACCTACTTGAACGTGGAGAGGGTGAT
TTGGTTGGAGTGGGGTGTCTTCGGCGACCAGGACACGAACGGGCATGTCG
ATAACATGTGCTGCTTCAAGGGCCCGGGGGAGGTCATTTTGCATTGGACA
GATGATGAAAACGACCCTCAATTTGAGCGGTCGTGGAGTGCTTATATCAC
GCTGACAAAGGAGGTAGACGCGAAGGGGAGGGCGTTGAGGATTCACAAAA
TGCCCTCCCCGGGACCCTTGTTCTATCAAGAGGAGGATATGGACGGGTTG
GTCGTCGGGGAACGAGGAGGTGAAGTAGATAAGGGAGGAAAGAAGGTGGT
GGGTGCTAGAATGGCGGCTTCGTATGTGAACTTTTATCTGGCGAACGAAG
CGGTGGTGGTTCCTCAATTCTTGGACCCGAAAGACGAGGAGGCGATTGAT
TTTCTCCAGCTGCTGTACCCGGAGCGCAGAGTTGTGGGGGTCTACAGTAG
AGATATTTTGTTGGGAGGTGGGAATATACATTGTATCACGCAGCAGCAGC
CCGCGAATGTTTTTGATGCGTTTTGAGGAGAGCGAGTTGGGGTGGAAAGG
CGTGAGGGGTG
back to top

protein sequence of jgi.p|Nanoce1779_2|582884

>mRNA_3646-protein ID=mRNA_3646-protein|Name=jgi.p|Nanoce1779_2|582884|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MPGTQSAAAPAFIGFVAGSAAVMTLVAIYDLLDLGPTYRDRQRKKRNLCS
SGAGGGGSGSDSEGCRPIPSFLTAMYLYEREIGLGEALPSTPLNDGFHMP
AEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGV
RSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRG
VDWNFNAYGGNYEPCERDQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGE
GTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDT
NGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRAL
RIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFY
LANEAVVVPQFLDPKDEEAIDFLQLLYPERRVVGVYSRDILLGGGNIHCI
TQQQPANVFDAF*
back to top

mRNA from alignment at scaffold_6:851552..853343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3646 ID=mRNA_3646|Name=jgi.p|Nanoce1779_2|582884|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at scaffold_6:851552..853343- (Nannochloropsis oceanica)
ACAACAGGACTATACTCTTGACGGCATACGCACCCTGTCTACGACGGCTG
ATTCTCCTTCACCAGCAGCGTGGCTGAAGAGCCCAAGTTAGTAGCCAAGA
CTCACCCTCCCCCCCCCCCCTGCCCCTTTTTGACACCTCCCCCGCTTCCC
CGTCCTAGGCCCGACTCTGTGCTCAGCCATGACTTCACATCTTCACACCA
CAAGATATGGGCATAAGCGCCTCCAATTGTACACAAAATTACTGACTCTG
TGCTCAGCCATGACTTCACATCTTCACACCACAAGATATGGGCATAAGCG
CCTCCAATTGTACACAAAATTACTAATTGCAACCCCCAACACAATGATAA
CCCCCAAACCCCCACAGCATGCCGGGCACTCAAAGCGCCGCGGCCCCGGC
ATTCATCGGGTTTGTCGCAGGAAGCGCGGCAGTCATGACGCTGGTGGCCA
TCTACGATTTACTTGACCTTGGTCCCACGTACCGGGACCGGCAGCGGAAG
AAGCGCAACTTATGTAGTAGTGGCGCTGGAGGTGGTGGCAGCGGCAGTGA
CAGCGAGGGCTGCAGACCAATCCCCTCATTTTTAACAGCCATGTACCTGT
ACGAACGAGAGATAGGGCTGGGAGAGGCTCTTCCATCTACCCCTTTGAAT
GACGGGTTTCACATGCCGGCCGAATGGGAGCACCACGCGGGCTGCTGGAT
TCTCTTCCCTTGGCAGAAGGACAATTGGGATCACGATGCCGAGCCTGCAC
AGAAGGCTTATGCACATGTTGCCAATGCCATTCAACAGCACGGCAACGAG
CAAGTCACGGTTGGGGTGCGTTCGGAGGATTGGAGCGTAGCAAGGGCGTT
GCTAAACCCGGCAGTGAGAGTGGTGGAGTTGGGGTGTGATGATGCGTGGG
TGCGGGATTCAGGGCCGACGTTCGTGGTAAAGGATGACCAGGAGAAAGAG
ACGAGAGAGGTCCGAGGAGTTGATTGGAATTTTAATGCATATGGTGGGAA
TTACGAGCCGTGTGAGAGGGATCAGTTGGTGGCACGGAAGTTACTGGAGG
TTGAGGGGGTGAGGAGGTATCATGCGCCGGTCGTTATGGAGGGGGGGTCT
TTCCATGTTGATGGGGAGGGCACGTGCATAGTAACGGAGGAATGCCTGCT
GCATCCATCAAGGAACCCGGGCTTGAGCAAGGAGGAGATAGAAGAGTATT
TGAAGACCTACTTGAACGTGGAGAGGGTGATTTGGTTGGAGTGGGGTGTC
TTCGGCGACCAGGACACGAACGGGCATGTCGATAACATGTGCTGCTTCAA
GGGCCCGGGGGAGGTCATTTTGCATTGGACAGATGATGAAAACGACCCTC
AATTTGAGCGGTCGTGGAGTGCTTATATCACGCTGACAAAGGAGGTAGAC
GCGAAGGGGAGGGCGTTGAGGATTCACAAAATGCCCTCCCCGGGACCCTT
GTTCTATCAAGAGGAGGATATGGACGGGTTGGTCGTCGGGGAACGAGGAG
GTGAAGTAGATAAGGGAGGAAAGAAGGTGGTGGGTGCTAGAATGGCGGCT
TCGTATGTGAACTTTTATCTGGCGAACGAAGCGGTGGTGGTTCCTCAATT
CTTGGACCCGAAAGACGAGGAGGCGATTGATTTTCTCCAGCTGCTGTACC
CGGAGCGCAGAGTTGTGGGGGTCTACAGTAGAGATATTTTGTTGGGAGGT
GGGAATATACATTGTATCACGCAGCAGCAGCCCGCGAATGTTTTTGATGC
GTTTTGAGGAGAGCGAGTTGGGGTGGAAAGGCGTGAGGGGTG
back to top

Coding sequence (CDS) from alignment at scaffold_6:851552..853343-

>mRNA_3646 ID=mRNA_3646|Name=jgi.p|Nanoce1779_2|582884|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at scaffold_6:851552..853343- (Nannochloropsis oceanica)
ATGCCGGGCACTCAAAGCGCCGCGGCCCCGGCATTCATCGGGTTTGTCGC
AGGAAGCGCGGCAGTCATGACGCTGGTGGCCATCTACGATTTACTTGACC
TTGGTCCCACGTACCGGGACCGGCAGCGGAAGAAGCGCAACTTATGTAGT
AGTGGCGCTGGAGGTGGTGGCAGCGGCAGTGACAGCGAGGGCTGCAGACC
AATCCCCTCATTTTTAACAGCCATGTACCTGTACGAACGAGAGATAGGGC
TGGGAGAGGCTCTTCCATCTACCCCTTTGAATGACGGGTTTCACATGCCG
GCCGAATGGGAGCACCACGCGGGCTGCTGGATTCTCTTCCCTTGGCAGAA
GGACAATTGGGATCACGATGCCGAGCCTGCACAGAAGGCTTATGCACATG
TTGCCAATGCCATTCAACAGCACGGCAACGAGCAAGTCACGGTTGGGGTG
CGTTCGGAGGATTGGAGCGTAGCAAGGGCGTTGCTAAACCCGGCAGTGAG
AGTGGTGGAGTTGGGGTGTGATGATGCGTGGGTGCGGGATTCAGGGCCGA
CGTTCGTGGTAAAGGATGACCAGGAGAAAGAGACGAGAGAGGTCCGAGGA
GTTGATTGGAATTTTAATGCATATGGTGGGAATTACGAGCCGTGTGAGAG
GGATCAGTTGGTGGCACGGAAGTTACTGGAGGTTGAGGGGGTGAGGAGGT
ATCATGCGCCGGTCGTTATGGAGGGGGGGTCTTTCCATGTTGATGGGGAG
GGCACGTGCATAGTAACGGAGGAATGCCTGCTGCATCCATCAAGGAACCC
GGGCTTGAGCAAGGAGGAGATAGAAGAGTATTTGAAGACCTACTTGAACG
TGGAGAGGGTGATTTGGTTGGAGTGGGGTGTCTTCGGCGACCAGGACACG
AACGGGCATGTCGATAACATGTGCTGCTTCAAGGGCCCGGGGGAGGTCAT
TTTGCATTGGACAGATGATGAAAACGACCCTCAATTTGAGCGGTCGTGGA
GTGCTTATATCACGCTGACAAAGGAGGTAGACGCGAAGGGGAGGGCGTTG
AGGATTCACAAAATGCCCTCCCCGGGACCCTTGTTCTATCAAGAGGAGGA
TATGGACGGGTTGGTCGTCGGGGAACGAGGAGGTGAAGTAGATAAGGGAG
GAAAGAAGGTGGTGGGTGCTAGAATGGCGGCTTCGTATGTGAACTTTTAT
CTGGCGAACGAAGCGGTGGTGGTTCCTCAATTCTTGGACCCGAAAGACGA
GGAGGCGATTGATTTTCTCCAGCTGCTGTACCCGGAGCGCAGAGTTGTGG
GGGTCTACAGTAGAGATATTTTGTTGGGAGGTGGGAATATACATTGTATC
ACGCAGCAGCAGCCCGCGAATGTTTTTGATGCGTTTTGA
back to top
Synonyms
Publications