jgi.p|Nanoce1779_2|582569, mRNA_3550 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582569
Unique Name	mRNA_3550
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2459
Alignment location	scaffold_6:634563..637021 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582655
Track	FilteredModels2
ProteinId	582569

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:634563..637021 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582569	gene_3550	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582569	mRNA_3550-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3550	CDS_3550	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:634563..637021-
coding sequence from alignment at scaffold_6:634563..637021-

mRNA sequence

>mRNA_3550 ID=mRNA_3550|Name=jgi.p|Nanoce1779_2|582569|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp
ACAGTGAAGATGGTTGCTAAAGCTGCTTTTGCCGGCGTTGCCGCCATGGG
TGTGCTGGGCGCCCAAGCGTTCATCCCCACGCCCGTGAGCTTGAGCAGCG
TGTTCGGCCAGCGTACGTCCGCGGCCCGCAGCGGCCCTGTAATGATGGCC
ACCGTGGCACCTGCCAAGGCCGTCGCCACTCCGGCAGACCTCACCCGTGC
GGCCAACGAAGCTCGTGGTCTTGCCCTGGACTCCATCACCGCTGCTCATT
CTGGTCACTTGGGTCTTCCCCTTGGGGCCGCCGACATCGGCGCTGTGCTT
TGGGGCAAACTCCTTCAGCACAACCCCGAGGACCCCCAGTGGATCAACCG
TGACCGATTCATCCTCTCAGCCGGTCACGGTTCTATGTTCATTTACTCCT
GGCTGCACTTGTCCGGGTACGCGCTGCCCCTGGAGGAGGTGAAGAAGTTC
CGCCAGCACCACTCCATGACCCCCGGCCACCCAGAGTTCCCCTCCTCCGA
GCACAACACGCCCGGCATTGAGTGTACTACGGGTCCCCTGGGCCAGGGTG
TTTCCAACGCCGTCGGGATGGCCGCAGCCCAGAAGCACGCCGCAGCCAGC
TACAACACGCCCAAGCACACGATATTCAATGGCCACATCATCGCCCTCGG
CGGTGACGGCTGCATTCAGGAGGGTGTCGCCGCAGAGTCGGCCGCCTTTG
CAGCCCACGAGAAACTGGACAACCTGATCATTCTGTACGACGCGAATGAC
GTGACCCTGGACGCTATGGCTGACCGCACCCAGTCCGAGGACGTGGCTAT
GCGCTACAAGGCCTACGGGTGGGACGTTGTGACCATCGACGGGCACGACC
TGACCGCCATCGAGAAGTCTATCTCCGATGCCAAGGCTAACGATAACGGC
AAGCCCAAGATGATTATTTGCAAAACCATCATCGGTAAGGGCATTGACGA
GATCGCCGGCACCAACGCCGCCCACGGTGAAGCCGGGGTCAAATTCTGTG
ACGAGTCCCGCAAGCGCCTCGGCCTCCCCGCTGAGAAGTGGTTTGTATCT
CCCGAGACCCGTGCTTTTATGGCTTCCCGCCAGGCCACCCTCAAGGCCGA
GTACGATGCCTGGCAGAAAACCTTCGCCGAGTGGAAGTCCGCCAACCCCG
ACAAGGCCAAGCTGCTCCAGGACGCGATCGACAAGAAGGTGCCCTCCTCG
GAGGATCTGATGAAGGCCATCCCCGAATTCGACGCCTCTAAGGACATCGC
TACCCGTGAGGCCGGCGCCGTCGTCCTCCAGCCCGTGGCCGCCGCTGTGC
CGAATTACCTGACCGGCTCGGCTGATCTCTTCGGCTCCACCAAGAACTAC
ATCAAGAACGGTGGCGACTTCGGCAGCGGCGAGGGTAAGACCTACACGGG
CCGCAACGTCCTCTATGGCATCCGCGAGCACGCAATGGGCTCCATCCTCA
ACGGTTTTGCCTATTTCGGCTTGCACCGGGTCTCCGGGGCCACTTTCTTG
GTCTTCGCCGACTACATGCGCGCGCCCGTCCGTGTCGCCGCCCTCTCCGA
GCTCCCCATCGGGTACATCTGGACGCACGACTCAATCGGTGTCGGTGAGG
ATGGACCTACCCACCAGCCGGTGGAGACGGTATCTGGTCTTCGTGTCTTT
CCCAACCTTGACGTCATCCGCCCCGCCGACTCCGAGGAAACCGCCGGTGC
CTTCGTCTCCTCCATCGTGCGCAAGGACGGTCCCACCGCGCTTATCCTTA
CCCGCCAGAACGTGAAACAGCTCCCCGGCACTCCCGCCGAGAAGCGTGCC
GGCGTTCTCAAGGGCGCTTACATCGTGAAGAAAGAGTCTGGGCCCCTCAA
GGCCATCATCATGGCTTCCGGCTCTGAGGTGCAGCACGCCGTCGAGGCCG
CTGCTGCCCTGGGCGAGGGAATCCGTGTCGTCTCTATGCCATGCATGGAG
ATCTTCGAGCGCCAGTCGGCTGAATACAAGGAGTCCATCCTCCCTGCGGA
CTGTCGTAAGCGTATCGCCATGGAGGCGGGCGTGACGGGCTTGTGGTACA
AGTACGTTGGCTTGGACGGGAAGGTCATCGGTGTGGACCGCTTTGGGTTC
TCGGCCCCGGGCCCCACCGTCATGAAGGAGTTGGGCATGACGGCCGACAA
TCTCGTCAAGGAGGCCAAGGCCTATCTGTAAGCAGCAGCAGCAGCTAGGA
CATTCCTAGGCGATTGTTTGCCCTTTCTTTTGTGTCATGTGCGTTTTGGC
GGGAGGTGGGAAGGGTCAGCCTCATTCATTTGTTATTAATAGGAAGAGGT
TCCCTTTTATCGTTTGCGACATTATTTTGGAAGGCAGGATGAAGTGGATG
AGATAAAGGGAGGGAGGGAGAGAGAGAGGGAGAGGGAGAGAGACAGAGAC
AGAGAGGGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGTTGAAAGGGA
GGAAGAAAT

protein sequence of jgi.p|Nanoce1779_2|582569

>mRNA_3550-protein ID=mRNA_3550-protein|Name=jgi.p|Nanoce1779_2|582569|organism=Nannochloropsis oceanica|type=polypeptide|length=724bp
MVAKAAFAGVAAMGVLGAQAFIPTPVSLSSVFGQRTSAARSGPVMMATVA
PAKAVATPADLTRAANEARGLALDSITAAHSGHLGLPLGAADIGAVLWGK
LLQHNPEDPQWINRDRFILSAGHGSMFIYSWLHLSGYALPLEEVKKFRQH
HSMTPGHPEFPSSEHNTPGIECTTGPLGQGVSNAVGMAAAQKHAAASYNT
PKHTIFNGHIIALGGDGCIQEGVAAESAAFAAHEKLDNLIILYDANDVTL
DAMADRTQSEDVAMRYKAYGWDVVTIDGHDLTAIEKSISDAKANDNGKPK
MIICKTIIGKGIDEIAGTNAAHGEAGVKFCDESRKRLGLPAEKWFVSPET
RAFMASRQATLKAEYDAWQKTFAEWKSANPDKAKLLQDAIDKKVPSSEDL
MKAIPEFDASKDIATREAGAVVLQPVAAAVPNYLTGSADLFGSTKNYIKN
GGDFGSGEGKTYTGRNVLYGIREHAMGSILNGFAYFGLHRVSGATFLVFA
DYMRAPVRVAALSELPIGYIWTHDSIGVGEDGPTHQPVETVSGLRVFPNL
DVIRPADSEETAGAFVSSIVRKDGPTALILTRQNVKQLPGTPAEKRAGVL
KGAYIVKKESGPLKAIIMASGSEVQHAVEAAAALGEGIRVVSMPCMEIFE
RQSAEYKESILPADCRKRIAMEAGVTGLWYKYVGLDGKVIGVDRFGFSAP
GPTVMKELGMTADNLVKEAKAYL*

mRNA from alignment at scaffold_6:634563..637021-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3550 ID=mRNA_3550|Name=jgi.p|Nanoce1779_2|582569|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp|location=Sequence derived from alignment at scaffold_6:634563..637021- (Nannochloropsis oceanica)
ACAGTGAAGATGGTTGCTAAAGCTGCTTTTGCCGGCGTTGCCGCCATGGG
TGTGCTGGGCGCCCAAGCGTTCATCCCCACGCCCGTGAGCTTGAGCAGCG
TGTTCGGCCAGCGTACGTCCGCGGCCCGCAGCGGCCCTGTAATGATGGCC
ACCGTGGCACCTGCCAAGGCCGTCGCCACTCCGGCAGACCTCACCCGTGC
GGCCAACGAAGCTCGTGGTCTTGCCCTGGACTCCATCACCGCTGCTCATT
CTGGTCACTTGGGTCTTCCCCTTGGGGCCGCCGACATCGGCGCTGTGCTT
TGGGGCAAACTCCTTCAGCACAACCCCGAGGACCCCCAGTGGATCAACCG
TGACCGATTCATCCTCTCAGCCGGTCACGGTTCTATGTTCATTTACTCCT
GGCTGCACTTGTCCGGGTACGCGCTGCCCCTGGAGGAGGTGAAGAAGTTC
CGCCAGCACCACTCCATGACCCCCGGCCACCCAGAGTTCCCCTCCTCCGA
GCACAACACGCCCGGCATTGAGTGTACTACGGGTCCCCTGGGCCAGGGTG
TTTCCAACGCCGTCGGGATGGCCGCAGCCCAGAAGCACGCCGCAGCCAGC
TACAACACGCCCAAGCACACGATATTCAATGGCCACATCATCGCCCTCGG
CGGTGACGGCTGCATTCAGGAGGGTGTCGCCGCAGAGTCGGCCGCCTTTG
CAGCCCACGAGAAACTGGACAACCTGATCATTCTGTACGACGCGAATGAC
GTGACCCTGGACGCTATGGCTGACCGCACCCAGTCCGAGGACGTGGCTAT
GCGCTACAAGGCCTACGGGTGGGACGTTGTGACCATCGACGGGCACGACC
TGACCGCCATCGAGAAGTCTATCTCCGATGCCAAGGCTAACGATAACGGC
AAGCCCAAGATGATTATTTGCAAAACCATCATCGGTAAGGGCATTGACGA
GATCGCCGGCACCAACGCCGCCCACGGTGAAGCCGGGGTCAAATTCTGTG
ACGAGTCCCGCAAGCGCCTCGGCCTCCCCGCTGAGAAGTGGTTTGTATCT
CCCGAGACCCGTGCTTTTATGGCTTCCCGCCAGGCCACCCTCAAGGCCGA
GTACGATGCCTGGCAGAAAACCTTCGCCGAGTGGAAGTCCGCCAACCCCG
ACAAGGCCAAGCTGCTCCAGGACGCGATCGACAAGAAGGTGCCCTCCTCG
GAGGATCTGATGAAGGCCATCCCCGAATTCGACGCCTCTAAGGACATCGC
TACCCGTGAGGCCGGCGCCGTCGTCCTCCAGCCCGTGGCCGCCGCTGTGC
CGAATTACCTGACCGGCTCGGCTGATCTCTTCGGCTCCACCAAGAACTAC
ATCAAGAACGGTGGCGACTTCGGCAGCGGCGAGGGTAAGACCTACACGGG
CCGCAACGTCCTCTATGGCATCCGCGAGCACGCAATGGGCTCCATCCTCA
ACGGTTTTGCCTATTTCGGCTTGCACCGGGTCTCCGGGGCCACTTTCTTG
GTCTTCGCCGACTACATGCGCGCGCCCGTCCGTGTCGCCGCCCTCTCCGA
GCTCCCCATCGGGTACATCTGGACGCACGACTCAATCGGTGTCGGTGAGG
ATGGACCTACCCACCAGCCGGTGGAGACGGTATCTGGTCTTCGTGTCTTT
CCCAACCTTGACGTCATCCGCCCCGCCGACTCCGAGGAAACCGCCGGTGC
CTTCGTCTCCTCCATCGTGCGCAAGGACGGTCCCACCGCGCTTATCCTTA
CCCGCCAGAACGTGAAACAGCTCCCCGGCACTCCCGCCGAGAAGCGTGCC
GGCGTTCTCAAGGGCGCTTACATCGTGAAGAAAGAGTCTGGGCCCCTCAA
GGCCATCATCATGGCTTCCGGCTCTGAGGTGCAGCACGCCGTCGAGGCCG
CTGCTGCCCTGGGCGAGGGAATCCGTGTCGTCTCTATGCCATGCATGGAG
ATCTTCGAGCGCCAGTCGGCTGAATACAAGGAGTCCATCCTCCCTGCGGA
CTGTCGTAAGCGTATCGCCATGGAGGCGGGCGTGACGGGCTTGTGGTACA
AGTACGTTGGCTTGGACGGGAAGGTCATCGGTGTGGACCGCTTTGGGTTC
TCGGCCCCGGGCCCCACCGTCATGAAGGAGTTGGGCATGACGGCCGACAA
TCTCGTCAAGGAGGCCAAGGCCTATCTGTAAGCAGCAGCAGCAGCTAGGA
CATTCCTAGGCGATTGTTTGCCCTTTCTTTTGTGTCATGTGCGTTTTGGC
GGGAGGTGGGAAGGGTCAGCCTCATTCATTTGTTATTAATAGGAAGAGGT
TCCCTTTTATCGTTTGCGACATTATTTTGGAAGGCAGGATGAAGTGGATG
AGATAAAGGGAGGGAGGGAGAGAGAGAGGGAGAGGGAGAGAGACAGAGAC
AGAGAGGGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGTTGAAAGGGA
GGAAGAAAT

Coding sequence (CDS) from alignment at scaffold_6:634563..637021-

>mRNA_3550 ID=mRNA_3550|Name=jgi.p|Nanoce1779_2|582569|organism=Nannochloropsis oceanica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_6:634563..637021- (Nannochloropsis oceanica)
ATGGTTGCTAAAGCTGCTTTTGCCGGCGTTGCCGCCATGGGTGTGCTGGG
CGCCCAAGCGTTCATCCCCACGCCCGTGAGCTTGAGCAGCGTGTTCGGCC
AGCGTACGTCCGCGGCCCGCAGCGGCCCTGTAATGATGGCCACCGTGGCA
CCTGCCAAGGCCGTCGCCACTCCGGCAGACCTCACCCGTGCGGCCAACGA
AGCTCGTGGTCTTGCCCTGGACTCCATCACCGCTGCTCATTCTGGTCACT
TGGGTCTTCCCCTTGGGGCCGCCGACATCGGCGCTGTGCTTTGGGGCAAA
CTCCTTCAGCACAACCCCGAGGACCCCCAGTGGATCAACCGTGACCGATT
CATCCTCTCAGCCGGTCACGGTTCTATGTTCATTTACTCCTGGCTGCACT
TGTCCGGGTACGCGCTGCCCCTGGAGGAGGTGAAGAAGTTCCGCCAGCAC
CACTCCATGACCCCCGGCCACCCAGAGTTCCCCTCCTCCGAGCACAACAC
GCCCGGCATTGAGTGTACTACGGGTCCCCTGGGCCAGGGTGTTTCCAACG
CCGTCGGGATGGCCGCAGCCCAGAAGCACGCCGCAGCCAGCTACAACACG
CCCAAGCACACGATATTCAATGGCCACATCATCGCCCTCGGCGGTGACGG
CTGCATTCAGGAGGGTGTCGCCGCAGAGTCGGCCGCCTTTGCAGCCCACG
AGAAACTGGACAACCTGATCATTCTGTACGACGCGAATGACGTGACCCTG
GACGCTATGGCTGACCGCACCCAGTCCGAGGACGTGGCTATGCGCTACAA
GGCCTACGGGTGGGACGTTGTGACCATCGACGGGCACGACCTGACCGCCA
TCGAGAAGTCTATCTCCGATGCCAAGGCTAACGATAACGGCAAGCCCAAG
ATGATTATTTGCAAAACCATCATCGGTAAGGGCATTGACGAGATCGCCGG
CACCAACGCCGCCCACGGTGAAGCCGGGGTCAAATTCTGTGACGAGTCCC
GCAAGCGCCTCGGCCTCCCCGCTGAGAAGTGGTTTGTATCTCCCGAGACC
CGTGCTTTTATGGCTTCCCGCCAGGCCACCCTCAAGGCCGAGTACGATGC
CTGGCAGAAAACCTTCGCCGAGTGGAAGTCCGCCAACCCCGACAAGGCCA
AGCTGCTCCAGGACGCGATCGACAAGAAGGTGCCCTCCTCGGAGGATCTG
ATGAAGGCCATCCCCGAATTCGACGCCTCTAAGGACATCGCTACCCGTGA
GGCCGGCGCCGTCGTCCTCCAGCCCGTGGCCGCCGCTGTGCCGAATTACC
TGACCGGCTCGGCTGATCTCTTCGGCTCCACCAAGAACTACATCAAGAAC
GGTGGCGACTTCGGCAGCGGCGAGGGTAAGACCTACACGGGCCGCAACGT
CCTCTATGGCATCCGCGAGCACGCAATGGGCTCCATCCTCAACGGTTTTG
CCTATTTCGGCTTGCACCGGGTCTCCGGGGCCACTTTCTTGGTCTTCGCC
GACTACATGCGCGCGCCCGTCCGTGTCGCCGCCCTCTCCGAGCTCCCCAT
CGGGTACATCTGGACGCACGACTCAATCGGTGTCGGTGAGGATGGACCTA
CCCACCAGCCGGTGGAGACGGTATCTGGTCTTCGTGTCTTTCCCAACCTT
GACGTCATCCGCCCCGCCGACTCCGAGGAAACCGCCGGTGCCTTCGTCTC
CTCCATCGTGCGCAAGGACGGTCCCACCGCGCTTATCCTTACCCGCCAGA
ACGTGAAACAGCTCCCCGGCACTCCCGCCGAGAAGCGTGCCGGCGTTCTC
AAGGGCGCTTACATCGTGAAGAAAGAGTCTGGGCCCCTCAAGGCCATCAT
CATGGCTTCCGGCTCTGAGGTGCAGCACGCCGTCGAGGCCGCTGCTGCCC
TGGGCGAGGGAATCCGTGTCGTCTCTATGCCATGCATGGAGATCTTCGAG
CGCCAGTCGGCTGAATACAAGGAGTCCATCCTCCCTGCGGACTGTCGTAA
GCGTATCGCCATGGAGGCGGGCGTGACGGGCTTGTGGTACAAGTACGTTG
GCTTGGACGGGAAGGTCATCGGTGTGGACCGCTTTGGGTTCTCGGCCCCG
GGCCCCACCGTCATGAAGGAGTTGGGCATGACGGCCGACAATCTCGTCAA
GGAGGCCAAGGCCTATCTGTAA

Synonyms

Publications