jgi.p|Nanoce1779_2|582569, gene_3550 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582569
Unique Namegene_3550
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:634563..637021 -

Link to JBrowse

Properties
Property NameValue
TranscriptId582655
ProteinId582569
Product nametransketolase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:634563..637021 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004802transketolase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02220NO08G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582569mRNA_3550-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582569mRNA_3550Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|582569

>mRNA_3550-protein ID=mRNA_3550-protein|Name=jgi.p|Nanoce1779_2|582569|organism=Nannochloropsis oceanica|type=polypeptide|length=724bp
MVAKAAFAGVAAMGVLGAQAFIPTPVSLSSVFGQRTSAARSGPVMMATVA
PAKAVATPADLTRAANEARGLALDSITAAHSGHLGLPLGAADIGAVLWGK
LLQHNPEDPQWINRDRFILSAGHGSMFIYSWLHLSGYALPLEEVKKFRQH
HSMTPGHPEFPSSEHNTPGIECTTGPLGQGVSNAVGMAAAQKHAAASYNT
PKHTIFNGHIIALGGDGCIQEGVAAESAAFAAHEKLDNLIILYDANDVTL
DAMADRTQSEDVAMRYKAYGWDVVTIDGHDLTAIEKSISDAKANDNGKPK
MIICKTIIGKGIDEIAGTNAAHGEAGVKFCDESRKRLGLPAEKWFVSPET
RAFMASRQATLKAEYDAWQKTFAEWKSANPDKAKLLQDAIDKKVPSSEDL
MKAIPEFDASKDIATREAGAVVLQPVAAAVPNYLTGSADLFGSTKNYIKN
GGDFGSGEGKTYTGRNVLYGIREHAMGSILNGFAYFGLHRVSGATFLVFA
DYMRAPVRVAALSELPIGYIWTHDSIGVGEDGPTHQPVETVSGLRVFPNL
DVIRPADSEETAGAFVSSIVRKDGPTALILTRQNVKQLPGTPAEKRAGVL
KGAYIVKKESGPLKAIIMASGSEVQHAVEAAAALGEGIRVVSMPCMEIFE
RQSAEYKESILPADCRKRIAMEAGVTGLWYKYVGLDGKVIGVDRFGFSAP
GPTVMKELGMTADNLVKEAKAYL*
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Synonyms
Publications