jgi.p|Nanoce1779_2|582277, mRNA_3475 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582277
Unique Name	mRNA_3475
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1976
Alignment location	scaffold_6:444101..446076 -

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Properties


Property Name	Value
TranscriptId	582363
Track	FilteredModels2
ProteinId	582277

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:444101..446076 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582277	gene_3475	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582277	mRNA_3475-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3475	CDS_3475	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:444101..446076-
coding sequence from alignment at scaffold_6:444101..446076-

mRNA sequence

>mRNA_3475 ID=mRNA_3475|Name=jgi.p|Nanoce1779_2|582277|organism=Nannochloropsis oceanica|type=mRNA|length=1976bp
AGCTCGAGGACAGGACACACAGCCGACACGCTTCCGGTACTATAGTGGAG
TCATTCGTCGCTGTGCCTATGACCAGCATCGCCTGCCCTGTAAAGCCCCT
CGAGGCATCACTACCCCAACACCACCATGAGTCTCTCCTGAGCAAACTAA
ACTCCTTCCTAAACCGCGACTACATATCCGACTGGGCCTACTACGGCTTC
TGGTTTGCCTTTTGGCTCATTGTGCCCTACGCGGTGCTTTTGGGCATCAT
GGTAATGGTAATGTACGACGCTGTGACGGTCAAGGGCAACCGCAAGCCAG
TTGGACCCGTCCTCATAACTGGCTGTGATTCCGGGTTTGGCAAAGGATTG
GCCATTGCCTTGAGCGAGCTGGGGTGGAAGGTGTATGCCACCTGCATGAC
GGACGCGGGTGTAGCCTTCTTCGCGACGAATGTCAACGTCACAGGCCTGC
GCATGGACGTGACCAAAGAAGACGAAGTGAAGGACCTCATGTTCATCATC
GACGCCACCCACCCGACGGAGGGCTTGTATGCCCTCGTCAATAATGCAGG
AGTGGACAAATTTGGTACCACGGACTGGTGCGACGTCGACCACTTCAAAT
GGCACATGGAAGTTAATTTCTTTGGACAAGTCCGAATGGTCAAGCAAGCC
TTGCCCTTACTCAAACGGGCGGCGCGTGCAAATGTGTACCACAGCTCGCG
CATCCTCAACATCACTTCCTTCAGTGGCCTTCTACCGGGCTTGTTTATGA
AGTCCGCCTACGGCGCCTCCAAGCACGCCGCGGAGTCCTGGTCTAATTCG
TTGCGGTTGGAGCTTCGCCATTTCGGCATCCAAGTCGGACAGATAAATCC
TGTCTGGCACCGAACTGATATTGCCCACTCCCAAGAGCAACATCTCGTCA
AGACATATGAATCTCTTCCTCCCGAGCTTCAGGCCGACTATGGCAAGGAG
TATTTTCTAAAGCTGGCTGATGTGGCTTACAGGGGACGGCAATCACACAC
CTGGGAGCCGGAAAATGTTGTGAAAGCCCTAGTTAATGCCGTTACAGCCG
AGCGACACCGCTGCCAGAGGCTGGTGGGGATGGATGCAATATTTTACATG
ACTCCGATTATGATGCTGCCGCGAAGGTTTATAAACATGTTGTATGATAG
GTGGGGTTTGGCGGCGGCCGTACCAGTCGGGGCTTTGAGCAACACAGTCC
GGACGCAGGTTTGAGGGAGTGAGGGTGAAAAGTGTTTGTACAAATACCAG
GAGAGGTTTGCGTGTGTGGTAACTTGATTTCGAAGAGAGAGGAAGTTAAA
AGAAAGATGGATGGAAGAGGAGGAAAAAGGGCAGAAGAAGTGGAGGTGGG
TATGGACTGGATAAGAGAGAGAAGACAAACGAAGGGAAAGTACCAAAATG
CGATAGACGAGTGTCGAGGTTAATCGTGTAATTATCAGTGATGAATGAAA
TGGATCAAGAATGATACGAGCCGGAAGAAATGGGAAGGCAAAAAAGCTGT
ATTGGCGTGGATGACGGCACTACGGAGACTTGAACGGAGCGCAATGGCGG
AAATGGTGAGGAGGCTATAGTAAAGACGGGATGATAGACGGTAAGACAGA
GTTTTTGAATGAAACACTGCACACGTTGTCAGGAATAGAATTGAGACTAG
TTATTCAGAGTCCACTTTGACTATTTGTCCGTGAGTCGCACGTCGTGATT
GTTATTTTTAGCACTTGTCATTGTACCTGCTCCGAGCTGTATAACATCAA
ATTGTTCTCTGTGTACCGTACAGCGACGCCCAGTTACTCCATACGTGAAC
GAAGTACCACAAGCATTCTTATTTGTTGGCCAAATGCGTGTGTCTCGTCC
TACCAGCCGAGTCATTCAACGCCTCATGCATCTTCCAATAGACCTAAAGC
ACGATCACAAAGGCACTCCTCAAAAGGACGCTCAAACGCACGCACTGTTA
AACATCCCACACGCACAGCGCACGCA

protein sequence of jgi.p|Nanoce1779_2|582277

>mRNA_3475-protein ID=mRNA_3475-protein|Name=jgi.p|Nanoce1779_2|582277|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MTSIACPVKPLEASLPQHHHESLLSKLNSFLNRDYISDWAYYGFWFAFWL
IVPYAVLLGIMVMVMYDAVTVKGNRKPVGPVLITGCDSGFGKGLAIALSE
LGWKVYATCMTDAGVAFFATNVNVTGLRMDVTKEDEVKDLMFIIDATHPT
EGLYALVNNAGVDKFGTTDWCDVDHFKWHMEVNFFGQVRMVKQALPLLKR
AARANVYHSSRILNITSFSGLLPGLFMKSAYGASKHAAESWSNSLRLELR
HFGIQVGQINPVWHRTDIAHSQEQHLVKTYESLPPELQADYGKEYFLKLA
DVAYRGRQSHTWEPENVVKALVNAVTAERHRCQRLVGMDAIFYMTPIMML
PRRFINMLYDRWGLAAAVPVGALSNTVRTQV*

mRNA from alignment at scaffold_6:444101..446076-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3475 ID=mRNA_3475|Name=jgi.p|Nanoce1779_2|582277|organism=Nannochloropsis oceanica|type=mRNA|length=1976bp|location=Sequence derived from alignment at scaffold_6:444101..446076- (Nannochloropsis oceanica)
AGCTCGAGGACAGGACACACAGCCGACACGCTTCCGGTACTATAGTGGAG
TCATTCGTCGCTGTGCCTATGACCAGCATCGCCTGCCCTGTAAAGCCCCT
CGAGGCATCACTACCCCAACACCACCATGAGTCTCTCCTGAGCAAACTAA
ACTCCTTCCTAAACCGCGACTACATATCCGACTGGGCCTACTACGGCTTC
TGGTTTGCCTTTTGGCTCATTGTGCCCTACGCGGTGCTTTTGGGCATCAT
GGTAATGGTAATGTACGACGCTGTGACGGTCAAGGGCAACCGCAAGCCAG
TTGGACCCGTCCTCATAACTGGCTGTGATTCCGGGTTTGGCAAAGGATTG
GCCATTGCCTTGAGCGAGCTGGGGTGGAAGGTGTATGCCACCTGCATGAC
GGACGCGGGTGTAGCCTTCTTCGCGACGAATGTCAACGTCACAGGCCTGC
GCATGGACGTGACCAAAGAAGACGAAGTGAAGGACCTCATGTTCATCATC
GACGCCACCCACCCGACGGAGGGCTTGTATGCCCTCGTCAATAATGCAGG
AGTGGACAAATTTGGTACCACGGACTGGTGCGACGTCGACCACTTCAAAT
GGCACATGGAAGTTAATTTCTTTGGACAAGTCCGAATGGTCAAGCAAGCC
TTGCCCTTACTCAAACGGGCGGCGCGTGCAAATGTGTACCACAGCTCGCG
CATCCTCAACATCACTTCCTTCAGTGGCCTTCTACCGGGCTTGTTTATGA
AGTCCGCCTACGGCGCCTCCAAGCACGCCGCGGAGTCCTGGTCTAATTCG
TTGCGGTTGGAGCTTCGCCATTTCGGCATCCAAGTCGGACAGATAAATCC
TGTCTGGCACCGAACTGATATTGCCCACTCCCAAGAGCAACATCTCGTCA
AGACATATGAATCTCTTCCTCCCGAGCTTCAGGCCGACTATGGCAAGGAG
TATTTTCTAAAGCTGGCTGATGTGGCTTACAGGGGACGGCAATCACACAC
CTGGGAGCCGGAAAATGTTGTGAAAGCCCTAGTTAATGCCGTTACAGCCG
AGCGACACCGCTGCCAGAGGCTGGTGGGGATGGATGCAATATTTTACATG
ACTCCGATTATGATGCTGCCGCGAAGGTTTATAAACATGTTGTATGATAG
GTGGGGTTTGGCGGCGGCCGTACCAGTCGGGGCTTTGAGCAACACAGTCC
GGACGCAGGTTTGAGGGAGTGAGGGTGAAAAGTGTTTGTACAAATACCAG
GAGAGGTTTGCGTGTGTGGTAACTTGATTTCGAAGAGAGAGGAAGTTAAA
AGAAAGATGGATGGAAGAGGAGGAAAAAGGGCAGAAGAAGTGGAGGTGGG
TATGGACTGGATAAGAGAGAGAAGACAAACGAAGGGAAAGTACCAAAATG
CGATAGACGAGTGTCGAGGTTAATCGTGTAATTATCAGTGATGAATGAAA
TGGATCAAGAATGATACGAGCCGGAAGAAATGGGAAGGCAAAAAAGCTGT
ATTGGCGTGGATGACGGCACTACGGAGACTTGAACGGAGCGCAATGGCGG
AAATGGTGAGGAGGCTATAGTAAAGACGGGATGATAGACGGTAAGACAGA
GTTTTTGAATGAAACACTGCACACGTTGTCAGGAATAGAATTGAGACTAG
TTATTCAGAGTCCACTTTGACTATTTGTCCGTGAGTCGCACGTCGTGATT
GTTATTTTTAGCACTTGTCATTGTACCTGCTCCGAGCTGTATAACATCAA
ATTGTTCTCTGTGTACCGTACAGCGACGCCCAGTTACTCCATACGTGAAC
GAAGTACCACAAGCATTCTTATTTGTTGGCCAAATGCGTGTGTCTCGTCC
TACCAGCCGAGTCATTCAACGCCTCATGCATCTTCCAATAGACCTAAAGC
ACGATCACAAAGGCACTCCTCAAAAGGACGCTCAAACGCACGCACTGTTA
AACATCCCACACGCACAGCGCACGCA

Coding sequence (CDS) from alignment at scaffold_6:444101..446076-

>mRNA_3475 ID=mRNA_3475|Name=jgi.p|Nanoce1779_2|582277|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_6:444101..446076- (Nannochloropsis oceanica)
ATGACCAGCATCGCCTGCCCTGTAAAGCCCCTCGAGGCATCACTACCCCA
ACACCACCATGAGTCTCTCCTGAGCAAACTAAACTCCTTCCTAAACCGCG
ACTACATATCCGACTGGGCCTACTACGGCTTCTGGTTTGCCTTTTGGCTC
ATTGTGCCCTACGCGGTGCTTTTGGGCATCATGGTAATGGTAATGTACGA
CGCTGTGACGGTCAAGGGCAACCGCAAGCCAGTTGGACCCGTCCTCATAA
CTGGCTGTGATTCCGGGTTTGGCAAAGGATTGGCCATTGCCTTGAGCGAG
CTGGGGTGGAAGGTGTATGCCACCTGCATGACGGACGCGGGTGTAGCCTT
CTTCGCGACGAATGTCAACGTCACAGGCCTGCGCATGGACGTGACCAAAG
AAGACGAAGTGAAGGACCTCATGTTCATCATCGACGCCACCCACCCGACG
GAGGGCTTGTATGCCCTCGTCAATAATGCAGGAGTGGACAAATTTGGTAC
CACGGACTGGTGCGACGTCGACCACTTCAAATGGCACATGGAAGTTAATT
TCTTTGGACAAGTCCGAATGGTCAAGCAAGCCTTGCCCTTACTCAAACGG
GCGGCGCGTGCAAATGTGTACCACAGCTCGCGCATCCTCAACATCACTTC
CTTCAGTGGCCTTCTACCGGGCTTGTTTATGAAGTCCGCCTACGGCGCCT
CCAAGCACGCCGCGGAGTCCTGGTCTAATTCGTTGCGGTTGGAGCTTCGC
CATTTCGGCATCCAAGTCGGACAGATAAATCCTGTCTGGCACCGAACTGA
TATTGCCCACTCCCAAGAGCAACATCTCGTCAAGACATATGAATCTCTTC
CTCCCGAGCTTCAGGCCGACTATGGCAAGGAGTATTTTCTAAAGCTGGCT
GATGTGGCTTACAGGGGACGGCAATCACACACCTGGGAGCCGGAAAATGT
TGTGAAAGCCCTAGTTAATGCCGTTACAGCCGAGCGACACCGCTGCCAGA
GGCTGGTGGGGATGGATGCAATATTTTACATGACTCCGATTATGATGCTG
CCGCGAAGGTTTATAAACATGTTGTATGATAGGTGGGGTTTGGCGGCGGC
CGTACCAGTCGGGGCTTTGAGCAACACAGTCCGGACGCAGGTTTGA

Synonyms

Publications