jgi.p|Nanoce1779_2|582277, gene_3475 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582277
Unique Namegene_3475
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:444101..446076 -

Link to JBrowse

Properties
Property NameValue
TranscriptId582363
ProteinId582277
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:444101..446076 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000252C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity
GO:00002533-keto sterol reductase activity
GO:0004033aldo-keto reductase (NADP) activity
GO:0004448isocitrate dehydrogenase activity
GO:0004495mevaldate reductase activity
GO:0008875gluconate dehydrogenase activity
GO:0016229steroid dehydrogenase activity
GO:0018451epoxide dehydrogenase activity
GO:00184525-exo-hydroxycamphor dehydrogenase activity
GO:00184532-hydroxytetrahydrofuran dehydrogenase activity
GO:0032442phenylcoumaran benzylic ether reductase activity
GO:0033764steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0033765steroid dehydrogenase activity, acting on the CH-CH group of donors
GO:0043713(R)-2-hydroxyisocaproate dehydrogenase activity
GO:00482583-ketoglucose-reductase activity
GO:0051990(R)-2-hydroxyglutarate dehydrogenase activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582277mRNA_3475-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582277mRNA_3475Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|582277

>mRNA_3475-protein ID=mRNA_3475-protein|Name=jgi.p|Nanoce1779_2|582277|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MTSIACPVKPLEASLPQHHHESLLSKLNSFLNRDYISDWAYYGFWFAFWL
IVPYAVLLGIMVMVMYDAVTVKGNRKPVGPVLITGCDSGFGKGLAIALSE
LGWKVYATCMTDAGVAFFATNVNVTGLRMDVTKEDEVKDLMFIIDATHPT
EGLYALVNNAGVDKFGTTDWCDVDHFKWHMEVNFFGQVRMVKQALPLLKR
AARANVYHSSRILNITSFSGLLPGLFMKSAYGASKHAAESWSNSLRLELR
HFGIQVGQINPVWHRTDIAHSQEQHLVKTYESLPPELQADYGKEYFLKLA
DVAYRGRQSHTWEPENVVKALVNAVTAERHRCQRLVGMDAIFYMTPIMML
PRRFINMLYDRWGLAAAVPVGALSNTVRTQV*
back to top
Synonyms
Publications