jgi.p|Nanoce1779_2|622811, mRNA_3470 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|622811
Unique NamemRNA_3470
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length684
Alignment locationscaffold_6:424345..425770 -

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Properties
Property NameValue
TranscriptId622897
TrackFilteredModels2
ProteinId622811
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:424345..425770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622811gene_3470Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622811mRNA_3470-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3470CDS_3470Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3470 ID=mRNA_3470|Name=jgi.p|Nanoce1779_2|622811|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
ATGCACGTGCATCAGCTGGCTGCCCTCCAAGCTGCGTACGAGGGCCTTGA
GGATGCCGGCATCCCATTGCACGAGATTTTTAAGACCCGCACAGGCGTTT
TCGTCGCGGGATACTGCCCTTTTCTGCCATCTGTCGATGCCCCCGACGAG
ACATTCTTGCGCAGTTCTGCGATGAGCTCTATTGCTGATCACGTGTCATA
TTTCCTCGGTACACATGGCCCCAGTGTCACCTTGGAAACGGCATGCTCTT
CCTCTTTGGTTGCCACTGCCCTGGCTGCCAATGCGCTTTCCGTTGGTGAC
TGCGACACGGCCATCGTCGTCGGCATTAACTATCTGTCGGAAAAAGACTT
TCATCTCTCCCTCCAAGCCTGCGGTGTGCTCGTGCAAGGCCCTGCTTGCC
ATCCCTTCGATGAGGACGGACCCAAAGGCTTCTTCCGCGCGGAAGGCATG
GGATGCATTGTGTTGCGTCGCATGGCTGATGCGGAGCAGCTGGGAAACCG
GATTTTGGTCAAGCTCTCCCGTGCAGTTGCTGCCAGTGCTGGTGCGGCTG
ATAGTTCCATGGACGGAGCTGGACGCGTATATGAGCAGCCCTGCCCGAAC
GGGATGCGTCAGATGTATGGATGGGATCAAGGGGGAGAGACAGGCGGGGG
TGGGAAGAGGGAAAGAATGGCATTTGATATATAG
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protein sequence of jgi.p|Nanoce1779_2|622811

>mRNA_3470-protein ID=mRNA_3470-protein|Name=jgi.p|Nanoce1779_2|622811|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MHVHQLAALQAAYEGLEDAGIPLHEIFKTRTGVFVAGYCPFLPSVDAPDE
TFLRSSAMSSIADHVSYFLGTHGPSVTLETACSSSLVATALAANALSVGD
CDTAIVVGINYLSEKDFHLSLQACGVLVQGPACHPFDEDGPKGFFRAEGM
GCIVLRRMADAEQLGNRILVKLSRAVAASAGAADSSMDGAGRVYEQPCPN
GMRQMYGWDQGGETGGGGKRERMAFDI*
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mRNA from alignment at scaffold_6:424345..425770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3470 ID=mRNA_3470|Name=jgi.p|Nanoce1779_2|622811|organism=Nannochloropsis oceanica|type=mRNA|length=1426bp|location=Sequence derived from alignment at scaffold_6:424345..425770- (Nannochloropsis oceanica)
ATGCACGTGCATCAGCTGGCTGCCCTCCAAGTACGTCTTTTGCAGAGGGG
CAAGGGTTGTGTGAGAGGAGGGGCATGCTTTGGGCAGGAGGGGGGCTTGG
GGGAGAAGTGTGGGGGCTCGCTCTTGATTTCACTCAAATCGCAGCACCTC
CCATCTATACCTCTGCCCCCCCTATATACAGATGGACGAAACGCAGAGCT
TATGGGCAGTATTGATACCATTGATTCTAATTTTGTTTTTCCTCTTCCCC
GCACTACCCCAACCCAATCCAATCACGGCAGGCTGCGTACGAGGGCCTTG
AGGATGCCGGCATCCCATTGCACGAGATTTTTAAGACCCGCACAGGCGTT
TTCGTCGCGGGATACTGCCCTTTTCTGCCATCTGTCGATGCCCCCGACGA
GACATTCTTGCGCAGTTCTGCGATGAGCTCTATTGCTGATCACGGTATGC
TTTGGTTGCGGTGGGTTGGGGGGAAGGCGAGCTTTTGTGTGTGAGGAACG
CTTTTCTCTTTTGAGCTCTGTACATATGTATAGAAGTTTTTTTTTAAGAA
AATATTTTTGTTTGGCTTTGATTTTGGTTTGTTTATGTGTACTATTGTGT
TGTTCTTGTGCGTGCGTACATGTATATGCCTTCATTTCCTCCCTCTGCAT
GCTTGGGCCAGCATGTTTTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
CCTCCCTCCCTCTCTCCCTTCCTTGCTTTAATTTTTATCCACTTTTTCAA
ACGCCACCGCAATTGCGGCATTTCTCTTCATTCATTATCCTTTTTTTCCA
TGTCTACTTGGCAAAATACTAATACAAAATTCCAATGACCCACGTCCCTC
CCCTCCTACCTCCATCTTTACCTGTAGTGTCATATTTCCTCGGTACACAT
GGCCCCAGTGTCACCTTGGAAACGGCATGCTCTTCCTCTTTGGTTGCCAC
TGCCCTGGCTGCCAATGCGCTTTCCGTTGGTGACTGCGACACGGCCATCG
TCGTCGGCATTAACTATCTGTCGGAAAAAGACTTTCATCTCTCCCTCCAA
GCCTGCGGTGTGCTCGTGCAAGGCCCTGCTTGCCATCCCTTCGATGAGGA
CGGACCCAAAGGCTTCTTCCGCGCGGAAGGCATGGGATGCATTGTGTTGC
GTCGCATGGCTGATGCGGAGCAGCTGGGAAACCGGATTTTGGTCAAGCTC
TCCCGTGCAGTTGCTGCCAGTGCTGGTGCGGCTGATAGTTCCATGGACGG
AGCTGGACGCGTATATGAGCAGCCCTGCCCGAACGGGATGCGTCAGATGT
ACATGCGTGCATTTTCGTCGGCGGGGATTCCGTTCAAGCGATTGAATTAC
ATGGAGGTATGGATGGGATCAAGGGGGAGAGACAGGCGGGGGTGGGAAGA
GGGAAAGAATGGCATTTGATATATAG
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Coding sequence (CDS) from alignment at scaffold_6:424345..425770-

>mRNA_3470 ID=mRNA_3470|Name=jgi.p|Nanoce1779_2|622811|organism=Nannochloropsis oceanica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_6:424345..425770- (Nannochloropsis oceanica)
GTATGGATGGGATCAAGGGGGAGAGACAGGCGGGGGTGGGAAGAGGGAAA
GAATGGCATTTGATATATAGTGTCATATTTCCTCGGTACACATGGCCCCA
GTGTCACCTTGGAAACGGCATGCTCTTCCTCTTTGGTTGCCACTGCCCTG
GCTGCCAATGCGCTTTCCGTTGGTGACTGCGACACGGCCATCGTCGTCGG
CATTAACTATCTGTCGGAAAAAGACTTTCATCTCTCCCTCCAAGCCTGCG
GTGTGCTCGTGCAAGGCCCTGCTTGCCATCCCTTCGATGAGGACGGACCC
AAAGGCTTCTTCCGCGCGGAAGGCATGGGATGCATTGTGTTGCGTCGCAT
GGCTGATGCGGAGCAGCTGGGAAACCGGATTTTGGTCAAGCTCTCCCGTG
CAGTTGCTGCCAGTGCTGGTGCGGCTGATAGTTCCATGGACGGAGCTGGA
CGCGTATATGAGCAGCCCTGCCCGAACGGGATGCGTCAGATGCTGCGTAC
GAGGGCCTTGAGGATGCCGGCATCCCATTGCACGAGATTTTTAAGACCCG
CACAGGCGTTTTCGTCGCGGGATACTGCCCTTTTCTGCCATCTGTCGATG
CCCCCGACGAGACATTCTTGCGCAGTTCTGCGATGAGCTCTATTGCTGAT
CACGATGCACGTGCATCAGCTGGCTGCCCTCCAAGTATGGATGGGATCAA
GGGGGAGAGACAGGCGGGGGTGGGAAGAGGGAAAGAATGGCATTTGATAT
ATAGTGTCATATTTCCTCGGTACACATGGCCCCAGTGTCACCTTGGAAAC
GGCATGCTCTTCCTCTTTGGTTGCCACTGCCCTGGCTGCCAATGCGCTTT
CCGTTGGTGACTGCGACACGGCCATCGTCGTCGGCATTAACTATCTGTCG
GAAAAAGACTTTCATCTCTCCCTCCAAGCCTGCGGTGTGCTCGTGCAAGG
CCCTGCTTGCCATCCCTTCGATGAGGACGGACCCAAAGGCTTCTTCCGCG
CGGAAGGCATGGGATGCATTGTGTTGCGTCGCATGGCTGATGCGGAGCAG
CTGGGAAACCGGATTTTGGTCAAGCTCTCCCGTGCAGTTGCTGCCAGTGC
TGGTGCGGCTGATAGTTCCATGGACGGAGCTGGACGCGTATATGAGCAGC
CCTGCCCGAACGGGATGCGTCAGATGCTGCGTACGAGGGCCTTGAGGATG
CCGGCATCCCATTGCACGAGATTTTTAAGACCCGCACAGGCGTTTTCGTC
GCGGGATACTGCCCTTTTCTGCCATCTGTCGATGCCCCCGACGAGACATT
CTTGCGCAGTTCTGCGATGAGCTCTATTGCTGATCACGATGCACGTGCAT
CAGCTGGCTGCCCTCCAAGTATGGATGGGATCAAGGGGGAGAGACAGGCG
GGGGTGGGAAGAGGGAAAGAATGGCATTTGATATATAGTGTCATATTTCC
TCGGTACACATGGCCCCAGTGTCACCTTGGAAACGGCATGCTCTTCCTCT
TTGGTTGCCACTGCCCTGGCTGCCAATGCGCTTTCCGTTGGTGACTGCGA
CACGGCCATCGTCGTCGGCATTAACTATCTGTCGGAAAAAGACTTTCATC
TCTCCCTCCAAGCCTGCGGTGTGCTCGTGCAAGGCCCTGCTTGCCATCCC
TTCGATGAGGACGGACCCAAAGGCTTCTTCCGCGCGGAAGGCATGGGATG
CATTGTGTTGCGTCGCATGGCTGATGCGGAGCAGCTGGGAAACCGGATTT
TGGTCAAGCTCTCCCGTGCAGTTGCTGCCAGTGCTGGTGCGGCTGATAGT
TCCATGGACGGAGCTGGACGCGTATATGAGCAGCCCTGCCCGAACGGGAT
GCGTCAGATGCTGCGTACGAGGGCCTTGAGGATGCCGGCATCCCATTGCA
CGAGATTTTTAAGACCCGCACAGGCGTTTTCGTCGCGGGATACTGCCCTT
TTCTGCCATCTGTCGATGCCCCCGACGAGACATTCTTGCGCAGTTCTGCG
ATGAGCTCTATTGCTGATCACGATGCACGTGCATCAGCTGGCTGCCCTCC
AAGTATGGATGGGATCAAGGGGGAGAGACAGGCGGGGGTGGGAAGAGGGA
AAGAATGGCATTTGATATATAGTGTCATATTTCCTCGGTACACATGGCCC
CAGTGTCACCTTGGAAACGGCATGCTCTTCCTCTTTGGTTGCCACTGCCC
TGGCTGCCAATGCGCTTTCCGTTGGTGACTGCGACACGGCCATCGTCGTC
GGCATTAACTATCTGTCGGAAAAAGACTTTCATCTCTCCCTCCAAGCCTG
CGGTGTGCTCGTGCAAGGCCCTGCTTGCCATCCCTTCGATGAGGACGGAC
CCAAAGGCTTCTTCCGCGCGGAAGGCATGGGATGCATTGTGTTGCGTCGC
ATGGCTGATGCGGAGCAGCTGGGAAACCGGATTTTGGTCAAGCTCTCCCG
TGCAGTTGCTGCCAGTGCTGGTGCGGCTGATAGTTCCATGGACGGAGCTG
GACGCGTATATGAGCAGCCCTGCCCGAACGGGATGCGTCAGATGCTGCGT
ACGAGGGCCTTGAGGATGCCGGCATCCCATTGCACGAGATTTTTAAGACC
CGCACAGGCGTTTTCGTCGCGGGATACTGCCCTTTTCTGCCATCTGTCGA
TGCCCCCGACGAGACATTCTTGCGCAGTTCTGCGATGAGCTCTATTGCTG
ATCACGATGCACGTGCATCAGCTGGCTGCCCTCCAA
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Synonyms
Publications