jgi.p|Nanoce1779_2|582020, mRNA_3407 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582020
Unique NamemRNA_3407
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1018
Alignment locationscaffold_6:240925..241942 -

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Properties
Property NameValue
TranscriptId582106
TrackFilteredModels2
ProteinId582020
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:240925..241942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582020gene_3407Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582020mRNA_3407-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3407CDS_3407Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3407 ID=mRNA_3407|Name=jgi.p|Nanoce1779_2|582020|organism=Nannochloropsis oceanica|type=mRNA|length=1018bp
TCCCCTCCGCGGTCTTTCTTCCCCCCCTCGACGACGACTTCGAGGACGAC
GACGAAGACGAGGATAACTTTAACCCCGACGAATGCCGTCCCTTGTTCTT
CTTGAAATACTTCTGCGAGTGCGTCCTCACCTGCTCGGCCGTCCTCGTCT
TCAACACTCCGGCAATGAGCCTCCAGCTACTCCCAAATCTCTGAAAGGCC
TCCAAAAACATGTCGTGCTCAAACCTCGACCATCTTCCTTCCCTGATACC
CTCCTCCCCTACCTTTGGGGCTGGACCAGCCGACATGGCGACAAGGGCGC
GACTGAGAGGGTGCAGGCGACTCCTCCCTCGCTTGTTGCTGATGGAGAGA
GCAGTAGTTGTAGCAGCGGAGGACGAGACAGAAGAGGAGGTACCACTACT
GCACCTACTCCTGCTAGATCCACCCCCTTCCTCATCGCTACTGCACAAAC
CCTCCCCATCCTCATCGCCTTCATCCTCCTCCGCTTCCTCCTCCCTCTGT
GGCTGCTGTTGCCTACGGCGCTTCGGCTGCTGACCACGCCGGCCTCCAAA
GGAAGGCCGACGAGCCGAGATAATCACATCTTCGTCTTGGTCGTCAATGT
CCTCTTCCCCAAACTCGTCGCTGCTACGCTCACTACAACTCCCACTGCTG
CTGCTGCTGCTACTGCTGCTGCTGCTCGTACTCTTCCCACTGTCGCTGTC
CGTGTCCGAGGTGTCGTGCTCCGGCCCCCCTTCGTGTCGTCGCTGCCAGC
CATATATGGGGCTGCCCGAGGAAAAGGAGATAGTGGTGGTAGTGGTCGTT
GTAGTGATGGCAGCACCAGGGGAGGGGGGAAGGGAGCAGCCCTCGTCTTC
CTCTTCCTCTCCCTCTTCATCGGAAGACGACAGCACGTTGCCGGCGAAGT
CCCGTCCGGGCAAAGCGCAATGCGGGAGATTGTGGTGGTGGTGGTGGTGA
TGGTGGTGCTGGTAGTGGGCCGAGGCCAAAGACGATGACGACGAGGACGT
GGAGAGAGCGCCCGAGGC
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protein sequence of jgi.p|Nanoce1779_2|582020

>mRNA_3407-protein ID=mRNA_3407-protein|Name=jgi.p|Nanoce1779_2|582020|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MPSLVLLEILLRVRPHLLGRPRLQHSGNEPPATPKSLKGLQKHVVLKPRP
SSFPDTLLPYLWGWTSRHGDKGATERVQATPPSLVADGESSSCSSGGRDR
RGGTTTAPTPARSTPFLIATAQTLPILIAFILLRFLLPLWLLLPTALRLL
TTPASKGRPTSRDNHIFVLVVNVLFPKLVAATLTTTPTAAAAATAAAART
LPTVAVRVRGVVLRPPFVSSLPAIYGAARGKGDSGGSGRCSDGSTRGGGK
GAALVFLFLSLFIGRRQHVAGEVPSGQSAMREIVVVVVVMVVLVVGRGQR
R*
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mRNA from alignment at scaffold_6:240925..241942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3407 ID=mRNA_3407|Name=jgi.p|Nanoce1779_2|582020|organism=Nannochloropsis oceanica|type=mRNA|length=1018bp|location=Sequence derived from alignment at scaffold_6:240925..241942- (Nannochloropsis oceanica)
TCCCCTCCGCGGTCTTTCTTCCCCCCCTCGACGACGACTTCGAGGACGAC
GACGAAGACGAGGATAACTTTAACCCCGACGAATGCCGTCCCTTGTTCTT
CTTGAAATACTTCTGCGAGTGCGTCCTCACCTGCTCGGCCGTCCTCGTCT
TCAACACTCCGGCAATGAGCCTCCAGCTACTCCCAAATCTCTGAAAGGCC
TCCAAAAACATGTCGTGCTCAAACCTCGACCATCTTCCTTCCCTGATACC
CTCCTCCCCTACCTTTGGGGCTGGACCAGCCGACATGGCGACAAGGGCGC
GACTGAGAGGGTGCAGGCGACTCCTCCCTCGCTTGTTGCTGATGGAGAGA
GCAGTAGTTGTAGCAGCGGAGGACGAGACAGAAGAGGAGGTACCACTACT
GCACCTACTCCTGCTAGATCCACCCCCTTCCTCATCGCTACTGCACAAAC
CCTCCCCATCCTCATCGCCTTCATCCTCCTCCGCTTCCTCCTCCCTCTGT
GGCTGCTGTTGCCTACGGCGCTTCGGCTGCTGACCACGCCGGCCTCCAAA
GGAAGGCCGACGAGCCGAGATAATCACATCTTCGTCTTGGTCGTCAATGT
CCTCTTCCCCAAACTCGTCGCTGCTACGCTCACTACAACTCCCACTGCTG
CTGCTGCTGCTACTGCTGCTGCTGCTCGTACTCTTCCCACTGTCGCTGTC
CGTGTCCGAGGTGTCGTGCTCCGGCCCCCCTTCGTGTCGTCGCTGCCAGC
CATATATGGGGCTGCCCGAGGAAAAGGAGATAGTGGTGGTAGTGGTCGTT
GTAGTGATGGCAGCACCAGGGGAGGGGGGAAGGGAGCAGCCCTCGTCTTC
CTCTTCCTCTCCCTCTTCATCGGAAGACGACAGCACGTTGCCGGCGAAGT
CCCGTCCGGGCAAAGCGCAATGCGGGAGATTGTGGTGGTGGTGGTGGTGA
TGGTGGTGCTGGTAGTGGGCCGAGGCCAAAGACGATGACGACGAGGACGT
GGAGAGAGCGCCCGAGGC
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Coding sequence (CDS) from alignment at scaffold_6:240925..241942-

>mRNA_3407 ID=mRNA_3407|Name=jgi.p|Nanoce1779_2|582020|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_6:240925..241942- (Nannochloropsis oceanica)
ATGCCGTCCCTTGTTCTTCTTGAAATACTTCTGCGAGTGCGTCCTCACCT
GCTCGGCCGTCCTCGTCTTCAACACTCCGGCAATGAGCCTCCAGCTACTC
CCAAATCTCTGAAAGGCCTCCAAAAACATGTCGTGCTCAAACCTCGACCA
TCTTCCTTCCCTGATACCCTCCTCCCCTACCTTTGGGGCTGGACCAGCCG
ACATGGCGACAAGGGCGCGACTGAGAGGGTGCAGGCGACTCCTCCCTCGC
TTGTTGCTGATGGAGAGAGCAGTAGTTGTAGCAGCGGAGGACGAGACAGA
AGAGGAGGTACCACTACTGCACCTACTCCTGCTAGATCCACCCCCTTCCT
CATCGCTACTGCACAAACCCTCCCCATCCTCATCGCCTTCATCCTCCTCC
GCTTCCTCCTCCCTCTGTGGCTGCTGTTGCCTACGGCGCTTCGGCTGCTG
ACCACGCCGGCCTCCAAAGGAAGGCCGACGAGCCGAGATAATCACATCTT
CGTCTTGGTCGTCAATGTCCTCTTCCCCAAACTCGTCGCTGCTACGCTCA
CTACAACTCCCACTGCTGCTGCTGCTGCTACTGCTGCTGCTGCTCGTACT
CTTCCCACTGTCGCTGTCCGTGTCCGAGGTGTCGTGCTCCGGCCCCCCTT
CGTGTCGTCGCTGCCAGCCATATATGGGGCTGCCCGAGGAAAAGGAGATA
GTGGTGGTAGTGGTCGTTGTAGTGATGGCAGCACCAGGGGAGGGGGGAAG
GGAGCAGCCCTCGTCTTCCTCTTCCTCTCCCTCTTCATCGGAAGACGACA
GCACGTTGCCGGCGAAGTCCCGTCCGGGCAAAGCGCAATGCGGGAGATTG
TGGTGGTGGTGGTGGTGATGGTGGTGCTGGTAGTGGGCCGAGGCCAAAGA
CGATGA
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Synonyms
Publications