jgi.p|Nanoce1779_2|669364, mRNA_3373 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669364
Unique Name	mRNA_3373
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2745
Alignment location	scaffold_6:163616..166360 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669450
Track	FilteredModels2
ProteinId	669364

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:163616..166360 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669364	gene_3373	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669364	mRNA_3373-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3373	CDS_3373	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:163616..166360+
coding sequence from alignment at scaffold_6:163616..166360+

mRNA sequence

>mRNA_3373 ID=mRNA_3373|Name=jgi.p|Nanoce1779_2|669364|organism=Nannochloropsis oceanica|type=mRNA|length=2745bp
AGAACCCAGGGTTTACATGCACGTCTAGATATCTGTGGAGAGAACACTGC
GGCTCAAGAGCATACGAAGCCAACACCTAGCATTCCCCTCTCATCCTCAT
CCCGTGCAACCAGCTCAAGCCCCCCGACGCCACACCAAATGAGCACGGCA
GGCCAGCCCTTAAAACGGGCCGTCCTGGAGCAGCTCCTCCCGGTCGTGAG
TAATGATGCGGGCGACCCCCGGGCCGCCGCCAGCCTCCAAGAATTTATCT
CGGCACACATCCCCATTGAGTCCGAACGGGAGCAACGCCGCCGCCGCGAC
AAGGTTTTAGAATTGCGTTCCCTGTTCTTGCAATGGGTGCAAGACACCTG
CCGTGCCAAAAACTTGCCAGAGGAAGTGGTGGCGGTGGCGGGTGGCGAAG
TCTACATCATGGGTAGCTACAAATTGAACGTGCACGAGCCGGGGGCAGAT
ATCGATTTGTGTTGCGTTGTCCCCCTCCACGTAGCCCGCGAAGAATTCTT
CACCTCCTTCCTCGAAAAACTACGGTCTCACCCCAAGGTTAAGGACCTGG
CCTGCGCGGCCTCGGCACACGTGCCCATCATGAGCTTTGCCTTGGACGGC
GTGGACTTCGACGTGTTATTCGCGCAGCTACCTCTCACCTCCGTCAAGGC
CGGGATGAGCGTGGATGATGATCTGGTTCTACGAGGGGTAGACGCCAAGA
CCTACCTCTCTCTCAACGGCCCCAGGACCACCAACATGATCACGAGGCTC
ATCCCTACTTCGGCGCAAGCATCCTTCCTCGCCGTCTTGCGCGTGGTGCG
TGTCTGGGCCAAGAACCGCGGCCTCTACGCCAATAAAATGGGATACCTCG
GAGGTGTTAATTTTAACATCCTCGTCGCGATGATTTGTCAGATGTATCCG
TATGCAAACCCTGCTTTGATGCTCCACCGTTTTTTTTTGGTCCTGGGGGA
GAGGTGGAAGTGGCCGACGCCTGTGAGATTGTGTAAGAACTTCGATGCGG
GCTTGGGATTCACGGTGTGGGAACAGGGAGGGTCGACGCGGCGGGAGTTG
ATGCCGATCATTACCCCGGCGTATCCCGCGGGGAACAGCGCCTACAACGT
GAGCACGCAGACGTTGGGGGTCATGAAGGAGGAGTTCGCCAGAGGGAAGA
AGATCATGGACAAATGCCTTGCCTTGGCCTCGGTGGACCCGACGGGGGCA
GTGGCACGGGCAGCATGGCTGGAGTTAATAGAGCCGTCGGATTTTTTTTT
GCGGTACAATAGGTACTTGGCCGTGGACATGTGGGCGAGTACCGCAGAAG
GAGAAGCGGCCTGGTTCGGTCTCGTCGAATCACGCTTGAGATTATTGGTG
GATATTTTGGATAGGGAGTTGCGAGAGATTTATGGCCTAGGACAGGTCTT
TAAGAGCGTTCATCTATTCCCGCGGGCTTTTCCGCCTTGTGCGGGCGCGG
GGGCGGCGGGACGGATGGAGGGAGGGAGAGGAGAGATGCATGCGGCGCAG
TGTTTTTACATCGGCTTGGCGTTTGATCGGGAGGAGATGGAGAGGAGGAA
GGTGGGGAAAGAGGTGTTTATTGGTGAGTTTATTCGGAAGTGGAGGTTTG
CCGTGGAGACTCCCCCTAGACCGCAGCCGGGGCATCAGCAGCTGCAGCAG
CCAAGAAGTCAACGGCCAAAGGGGTGTGACGTTCTGGTGAGCGAGGTGAA
ATGGAGGGAGCTCCCTGCGTGTGTGTTTGACAGCTTGGGGGGGGAGAAGG
TGGCGAGGGCGAGGAGGAGGAGGGAGAGGGGAAAGGGGGGAAAGAAGCAG
AAGAAGGGGAAGAAGAGGGCCAGAAGGGGAGATGGGGAGGAAGAGGAGGA
GGAGGAAGAAGTGGAGGGAGGGTTGGCGGTGGCGGAAGGGCAGAAGGAGG
AGGGGAGGAAGGAGGGGGAGGGAGAAGAGGAGGACGAGATAGAAGGCTTT
ACGCCCTTGCATACAGCAGCTTACACGGGAGACTTAATCACCGTCAAGAT
ATTGACAAAGGAGGAAGAGGGGGAGGGAGAGGGAGGGAGGGAGGGAGGGA
GGGGGGGGTTAGTGGCGGTGAAGAGGGTGGATGCCTTAGATGCCAAAGGG
CGGACACCAGCACAGGTCGCGAGGGAGAGAGGCTTCGACGAAGTGGCTTT
GTATTTGGAAGGATTGATTGAGGAGGAGGGGGAGAGAGGAGGGGAAGGAG
GGGGGGGTGGGGAGGGGAATGGGAAAGTTAAGGAGAAAACGAATAATGGG
GGGCCGGCCTCAAGACTGCCTCCAGTGGACGGAAACGCGGAATATGATGA
TGCCGATGACGACGTGTTAGGGGCGGCCGAGGCAGCCATGGAGCAGGCGA
TGGAAGAGGAGGAGGAGGAAGGGGGGGAGGAAGGGAAGGAGGAAGTTGCA
GCTGGAAGAGCAGCCGCGGCAGCAGCGGCAGAGAAGAAGAGGAGGGAAGA
AGAGGAGGAAGAGGAGGTGGAGGAAATGAAGAAGAAGAAGGCGTTGCTCA
TGAGTGCGCACATGGTGATGGTGGAGGCGGGAGAGTTGAACCTAGAGCCC
TTTATACCAAGATGGAGGAAGGAGGCTATGCTGGTGCTGACGGGAGGGGG
GAGGGAGAGAGGGAGGGGGGAATGTTTGATTCGGACCCCTGTGGTGATGG
ATCTGACCTTGGATGGGAATAAGGAAGAGGGGGAAGAAAAGGGGGAGGAG
AGGTCGGGGAAGAGGAGAGGGGAACGAGGGGGGAGACGCAAATGA

protein sequence of jgi.p|Nanoce1779_2|669364

>mRNA_3373-protein ID=mRNA_3373-protein|Name=jgi.p|Nanoce1779_2|669364|organism=Nannochloropsis oceanica|type=polypeptide|length=869bp
MSTAGQPLKRAVLEQLLPVVSNDAGDPRAAASLQEFISAHIPIESEREQR
RRRDKVLELRSLFLQWVQDTCRAKNLPEEVVAVAGGEVYIMGSYKLNVHE
PGADIDLCCVVPLHVAREEFFTSFLEKLRSHPKVKDLACAASAHVPIMSF
ALDGVDFDVLFAQLPLTSVKAGMSVDDDLVLRGVDAKTYLSLNGPRTTNM
ITRLIPTSAQASFLAVLRVVRVWAKNRGLYANKMGYLGGVNFNILVAMIC
QMYPYANPALMLHRFFLVLGERWKWPTPVRLCKNFDAGLGFTVWEQGGST
RRELMPIITPAYPAGNSAYNVSTQTLGVMKEEFARGKKIMDKCLALASVD
PTGAVARAAWLELIEPSDFFLRYNRYLAVDMWASTAEGEAAWFGLVESRL
RLLVDILDRELREIYGLGQVFKSVHLFPRAFPPCAGAGAAGRMEGGRGEM
HAAQCFYIGLAFDREEMERRKVGKEVFIGEFIRKWRFAVETPPRPQPGHQ
QLQQPRSQRPKGCDVLVSEVKWRELPACVFDSLGGEKVARARRRRERGKG
GKKQKKGKKRARRGDGEEEEEEEEVEGGLAVAEGQKEEGRKEGEGEEEDE
IEGFTPLHTAAYTGDLITVKILTKEEEGEGEGGREGGRGGLVAVKRVDAL
DAKGRTPAQVARERGFDEVALYLEGLIEEEGERGGEGGGGGEGNGKVKEK
TNNGGPASRLPPVDGNAEYDDADDDVLGAAEAAMEQAMEEEEEEGGEEGK
EEVAAGRAAAAAAAEKKRREEEEEEEVEEMKKKKALLMSAHMVMVEAGEL
NLEPFIPRWRKEAMLVLTGGGRERGRGECLIRTPVVMDLTLDGNKEEGEE
KGEERSGKRRGERGGRRK*

mRNA from alignment at scaffold_6:163616..166360+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3373 ID=mRNA_3373|Name=jgi.p|Nanoce1779_2|669364|organism=Nannochloropsis oceanica|type=mRNA|length=2745bp|location=Sequence derived from alignment at scaffold_6:163616..166360+ (Nannochloropsis oceanica)
AGAACCCAGGGTTTACATGCACGTCTAGATATCTGTGGAGAGAACACTGC
GGCTCAAGAGCATACGAAGCCAACACCTAGCATTCCCCTCTCATCCTCAT
CCCGTGCAACCAGCTCAAGCCCCCCGACGCCACACCAAATGAGCACGGCA
GGCCAGCCCTTAAAACGGGCCGTCCTGGAGCAGCTCCTCCCGGTCGTGAG
TAATGATGCGGGCGACCCCCGGGCCGCCGCCAGCCTCCAAGAATTTATCT
CGGCACACATCCCCATTGAGTCCGAACGGGAGCAACGCCGCCGCCGCGAC
AAGGTTTTAGAATTGCGTTCCCTGTTCTTGCAATGGGTGCAAGACACCTG
CCGTGCCAAAAACTTGCCAGAGGAAGTGGTGGCGGTGGCGGGTGGCGAAG
TCTACATCATGGGTAGCTACAAATTGAACGTGCACGAGCCGGGGGCAGAT
ATCGATTTGTGTTGCGTTGTCCCCCTCCACGTAGCCCGCGAAGAATTCTT
CACCTCCTTCCTCGAAAAACTACGGTCTCACCCCAAGGTTAAGGACCTGG
CCTGCGCGGCCTCGGCACACGTGCCCATCATGAGCTTTGCCTTGGACGGC
GTGGACTTCGACGTGTTATTCGCGCAGCTACCTCTCACCTCCGTCAAGGC
CGGGATGAGCGTGGATGATGATCTGGTTCTACGAGGGGTAGACGCCAAGA
CCTACCTCTCTCTCAACGGCCCCAGGACCACCAACATGATCACGAGGCTC
ATCCCTACTTCGGCGCAAGCATCCTTCCTCGCCGTCTTGCGCGTGGTGCG
TGTCTGGGCCAAGAACCGCGGCCTCTACGCCAATAAAATGGGATACCTCG
GAGGTGTTAATTTTAACATCCTCGTCGCGATGATTTGTCAGATGTATCCG
TATGCAAACCCTGCTTTGATGCTCCACCGTTTTTTTTTGGTCCTGGGGGA
GAGGTGGAAGTGGCCGACGCCTGTGAGATTGTGTAAGAACTTCGATGCGG
GCTTGGGATTCACGGTGTGGGAACAGGGAGGGTCGACGCGGCGGGAGTTG
ATGCCGATCATTACCCCGGCGTATCCCGCGGGGAACAGCGCCTACAACGT
GAGCACGCAGACGTTGGGGGTCATGAAGGAGGAGTTCGCCAGAGGGAAGA
AGATCATGGACAAATGCCTTGCCTTGGCCTCGGTGGACCCGACGGGGGCA
GTGGCACGGGCAGCATGGCTGGAGTTAATAGAGCCGTCGGATTTTTTTTT
GCGGTACAATAGGTACTTGGCCGTGGACATGTGGGCGAGTACCGCAGAAG
GAGAAGCGGCCTGGTTCGGTCTCGTCGAATCACGCTTGAGATTATTGGTG
GATATTTTGGATAGGGAGTTGCGAGAGATTTATGGCCTAGGACAGGTCTT
TAAGAGCGTTCATCTATTCCCGCGGGCTTTTCCGCCTTGTGCGGGCGCGG
GGGCGGCGGGACGGATGGAGGGAGGGAGAGGAGAGATGCATGCGGCGCAG
TGTTTTTACATCGGCTTGGCGTTTGATCGGGAGGAGATGGAGAGGAGGAA
GGTGGGGAAAGAGGTGTTTATTGGTGAGTTTATTCGGAAGTGGAGGTTTG
CCGTGGAGACTCCCCCTAGACCGCAGCCGGGGCATCAGCAGCTGCAGCAG
CCAAGAAGTCAACGGCCAAAGGGGTGTGACGTTCTGGTGAGCGAGGTGAA
ATGGAGGGAGCTCCCTGCGTGTGTGTTTGACAGCTTGGGGGGGGAGAAGG
TGGCGAGGGCGAGGAGGAGGAGGGAGAGGGGAAAGGGGGGAAAGAAGCAG
AAGAAGGGGAAGAAGAGGGCCAGAAGGGGAGATGGGGAGGAAGAGGAGGA
GGAGGAAGAAGTGGAGGGAGGGTTGGCGGTGGCGGAAGGGCAGAAGGAGG
AGGGGAGGAAGGAGGGGGAGGGAGAAGAGGAGGACGAGATAGAAGGCTTT
ACGCCCTTGCATACAGCAGCTTACACGGGAGACTTAATCACCGTCAAGAT
ATTGACAAAGGAGGAAGAGGGGGAGGGAGAGGGAGGGAGGGAGGGAGGGA
GGGGGGGGTTAGTGGCGGTGAAGAGGGTGGATGCCTTAGATGCCAAAGGG
CGGACACCAGCACAGGTCGCGAGGGAGAGAGGCTTCGACGAAGTGGCTTT
GTATTTGGAAGGATTGATTGAGGAGGAGGGGGAGAGAGGAGGGGAAGGAG
GGGGGGGTGGGGAGGGGAATGGGAAAGTTAAGGAGAAAACGAATAATGGG
GGGCCGGCCTCAAGACTGCCTCCAGTGGACGGAAACGCGGAATATGATGA
TGCCGATGACGACGTGTTAGGGGCGGCCGAGGCAGCCATGGAGCAGGCGA
TGGAAGAGGAGGAGGAGGAAGGGGGGGAGGAAGGGAAGGAGGAAGTTGCA
GCTGGAAGAGCAGCCGCGGCAGCAGCGGCAGAGAAGAAGAGGAGGGAAGA
AGAGGAGGAAGAGGAGGTGGAGGAAATGAAGAAGAAGAAGGCGTTGCTCA
TGAGTGCGCACATGGTGATGGTGGAGGCGGGAGAGTTGAACCTAGAGCCC
TTTATACCAAGATGGAGGAAGGAGGCTATGCTGGTGCTGACGGGAGGGGG
GAGGGAGAGAGGGAGGGGGGAATGTTTGATTCGGACCCCTGTGGTGATGG
ATCTGACCTTGGATGGGAATAAGGAAGAGGGGGAAGAAAAGGGGGAGGAG
AGGTCGGGGAAGAGGAGAGGGGAACGAGGGGGGAGACGCAAATGA

Coding sequence (CDS) from alignment at scaffold_6:163616..166360+

>mRNA_3373 ID=mRNA_3373|Name=jgi.p|Nanoce1779_2|669364|organism=Nannochloropsis oceanica|type=CDS|length=2607bp|location=Sequence derived from alignment at scaffold_6:163616..166360+ (Nannochloropsis oceanica)
ATGAGCACGGCAGGCCAGCCCTTAAAACGGGCCGTCCTGGAGCAGCTCCT
CCCGGTCGTGAGTAATGATGCGGGCGACCCCCGGGCCGCCGCCAGCCTCC
AAGAATTTATCTCGGCACACATCCCCATTGAGTCCGAACGGGAGCAACGC
CGCCGCCGCGACAAGGTTTTAGAATTGCGTTCCCTGTTCTTGCAATGGGT
GCAAGACACCTGCCGTGCCAAAAACTTGCCAGAGGAAGTGGTGGCGGTGG
CGGGTGGCGAAGTCTACATCATGGGTAGCTACAAATTGAACGTGCACGAG
CCGGGGGCAGATATCGATTTGTGTTGCGTTGTCCCCCTCCACGTAGCCCG
CGAAGAATTCTTCACCTCCTTCCTCGAAAAACTACGGTCTCACCCCAAGG
TTAAGGACCTGGCCTGCGCGGCCTCGGCACACGTGCCCATCATGAGCTTT
GCCTTGGACGGCGTGGACTTCGACGTGTTATTCGCGCAGCTACCTCTCAC
CTCCGTCAAGGCCGGGATGAGCGTGGATGATGATCTGGTTCTACGAGGGG
TAGACGCCAAGACCTACCTCTCTCTCAACGGCCCCAGGACCACCAACATG
ATCACGAGGCTCATCCCTACTTCGGCGCAAGCATCCTTCCTCGCCGTCTT
GCGCGTGGTGCGTGTCTGGGCCAAGAACCGCGGCCTCTACGCCAATAAAA
TGGGATACCTCGGAGGTGTTAATTTTAACATCCTCGTCGCGATGATTTGT
CAGATGTATCCGTATGCAAACCCTGCTTTGATGCTCCACCGTTTTTTTTT
GGTCCTGGGGGAGAGGTGGAAGTGGCCGACGCCTGTGAGATTGTGTAAGA
ACTTCGATGCGGGCTTGGGATTCACGGTGTGGGAACAGGGAGGGTCGACG
CGGCGGGAGTTGATGCCGATCATTACCCCGGCGTATCCCGCGGGGAACAG
CGCCTACAACGTGAGCACGCAGACGTTGGGGGTCATGAAGGAGGAGTTCG
CCAGAGGGAAGAAGATCATGGACAAATGCCTTGCCTTGGCCTCGGTGGAC
CCGACGGGGGCAGTGGCACGGGCAGCATGGCTGGAGTTAATAGAGCCGTC
GGATTTTTTTTTGCGGTACAATAGGTACTTGGCCGTGGACATGTGGGCGA
GTACCGCAGAAGGAGAAGCGGCCTGGTTCGGTCTCGTCGAATCACGCTTG
AGATTATTGGTGGATATTTTGGATAGGGAGTTGCGAGAGATTTATGGCCT
AGGACAGGTCTTTAAGAGCGTTCATCTATTCCCGCGGGCTTTTCCGCCTT
GTGCGGGCGCGGGGGCGGCGGGACGGATGGAGGGAGGGAGAGGAGAGATG
CATGCGGCGCAGTGTTTTTACATCGGCTTGGCGTTTGATCGGGAGGAGAT
GGAGAGGAGGAAGGTGGGGAAAGAGGTGTTTATTGGTGAGTTTATTCGGA
AGTGGAGGTTTGCCGTGGAGACTCCCCCTAGACCGCAGCCGGGGCATCAG
CAGCTGCAGCAGCCAAGAAGTCAACGGCCAAAGGGGTGTGACGTTCTGGT
GAGCGAGGTGAAATGGAGGGAGCTCCCTGCGTGTGTGTTTGACAGCTTGG
GGGGGGAGAAGGTGGCGAGGGCGAGGAGGAGGAGGGAGAGGGGAAAGGGG
GGAAAGAAGCAGAAGAAGGGGAAGAAGAGGGCCAGAAGGGGAGATGGGGA
GGAAGAGGAGGAGGAGGAAGAAGTGGAGGGAGGGTTGGCGGTGGCGGAAG
GGCAGAAGGAGGAGGGGAGGAAGGAGGGGGAGGGAGAAGAGGAGGACGAG
ATAGAAGGCTTTACGCCCTTGCATACAGCAGCTTACACGGGAGACTTAAT
CACCGTCAAGATATTGACAAAGGAGGAAGAGGGGGAGGGAGAGGGAGGGA
GGGAGGGAGGGAGGGGGGGGTTAGTGGCGGTGAAGAGGGTGGATGCCTTA
GATGCCAAAGGGCGGACACCAGCACAGGTCGCGAGGGAGAGAGGCTTCGA
CGAAGTGGCTTTGTATTTGGAAGGATTGATTGAGGAGGAGGGGGAGAGAG
GAGGGGAAGGAGGGGGGGGTGGGGAGGGGAATGGGAAAGTTAAGGAGAAA
ACGAATAATGGGGGGCCGGCCTCAAGACTGCCTCCAGTGGACGGAAACGC
GGAATATGATGATGCCGATGACGACGTGTTAGGGGCGGCCGAGGCAGCCA
TGGAGCAGGCGATGGAAGAGGAGGAGGAGGAAGGGGGGGAGGAAGGGAAG
GAGGAAGTTGCAGCTGGAAGAGCAGCCGCGGCAGCAGCGGCAGAGAAGAA
GAGGAGGGAAGAAGAGGAGGAAGAGGAGGTGGAGGAAATGAAGAAGAAGA
AGGCGTTGCTCATGAGTGCGCACATGGTGATGGTGGAGGCGGGAGAGTTG
AACCTAGAGCCCTTTATACCAAGATGGAGGAAGGAGGCTATGCTGGTGCT
GACGGGAGGGGGGAGGGAGAGAGGGAGGGGGGAATGTTTGATTCGGACCC
CTGTGGTGATGGATCTGACCTTGGATGGGAATAAGGAAGAGGGGGAAGAA
AAGGGGGAGGAGAGGTCGGGGAAGAGGAGAGGGGAACGAGGGGGGAGACG
CAAATGA

Synonyms

Publications