jgi.p|Nanoce1779_2|669364, gene_3373 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669364
Unique Namegene_3373
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:163616..166360 +

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Properties
Property NameValue
TranscriptId669450
ProteinId669364
Product namePoly(A) polymerase central domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:163616..166360 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0031123RNA 3'-end processing
GO:0043631RNA polyadenylation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0004652polynucleotide adenylyltransferase activity
GO:0016779nucleotidyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00460NO08G00460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669364mRNA_3373-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669364mRNA_3373Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|669364

>mRNA_3373-protein ID=mRNA_3373-protein|Name=jgi.p|Nanoce1779_2|669364|organism=Nannochloropsis oceanica|type=polypeptide|length=869bp
MSTAGQPLKRAVLEQLLPVVSNDAGDPRAAASLQEFISAHIPIESEREQR
RRRDKVLELRSLFLQWVQDTCRAKNLPEEVVAVAGGEVYIMGSYKLNVHE
PGADIDLCCVVPLHVAREEFFTSFLEKLRSHPKVKDLACAASAHVPIMSF
ALDGVDFDVLFAQLPLTSVKAGMSVDDDLVLRGVDAKTYLSLNGPRTTNM
ITRLIPTSAQASFLAVLRVVRVWAKNRGLYANKMGYLGGVNFNILVAMIC
QMYPYANPALMLHRFFLVLGERWKWPTPVRLCKNFDAGLGFTVWEQGGST
RRELMPIITPAYPAGNSAYNVSTQTLGVMKEEFARGKKIMDKCLALASVD
PTGAVARAAWLELIEPSDFFLRYNRYLAVDMWASTAEGEAAWFGLVESRL
RLLVDILDRELREIYGLGQVFKSVHLFPRAFPPCAGAGAAGRMEGGRGEM
HAAQCFYIGLAFDREEMERRKVGKEVFIGEFIRKWRFAVETPPRPQPGHQ
QLQQPRSQRPKGCDVLVSEVKWRELPACVFDSLGGEKVARARRRRERGKG
GKKQKKGKKRARRGDGEEEEEEEEVEGGLAVAEGQKEEGRKEGEGEEEDE
IEGFTPLHTAAYTGDLITVKILTKEEEGEGEGGREGGRGGLVAVKRVDAL
DAKGRTPAQVARERGFDEVALYLEGLIEEEGERGGEGGGGGEGNGKVKEK
TNNGGPASRLPPVDGNAEYDDADDDVLGAAEAAMEQAMEEEEEEGGEEGK
EEVAAGRAAAAAAAEKKRREEEEEEEVEEMKKKKALLMSAHMVMVEAGEL
NLEPFIPRWRKEAMLVLTGGGRERGRGECLIRTPVVMDLTLDGNKEEGEE
KGEERSGKRRGERGGRRK*
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Synonyms
Publications