Properties
| Property Name | Value |
|---|
| TranscriptId | 582003 |
| Track | FilteredModels2 |
| ProteinId | 581917 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:158391..160734 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3372 ID=mRNA_3372|Name=jgi.p|Nanoce1779_2|581917|organism=Nannochloropsis oceanica|type=mRNA|length=1658bp
CGGCGGTGGAGGCGACGACGCAGGCGTACAAGGAAGGAGAGATTGCGTGT
CGTGTGTATGAGTATGAGAATGAGCGGACGTGTGATGCACATGTGCAGAC
TTTTTTGGAGTGCATCCATGCGGTCAAAGACGTGACACCTGAGGGGTTCG
CGGCAATTAAAGTCACTGCTCTAGGCAATCCGCAACTGCTAGAGAGGATG
TCAGTGTGCGTGGTGGAGATGGGGAAGCTCTTCAAGAAGTTTGACACACA
AGACAAGGGATACATCACCCGGCAAGAGTTCCTGGAAGGCTATGACAGGT
ACTTCTTGCCCTCCTCCTCCCCCTCTTCCTCTTCTGGTGCTGCTGCTCCT
GTGGCCGGTGATGGAAAAGACGGCGACCTGGCCGCCCAGCTCCTCGCGCG
GTTGGATCCAAACGGAACTGATCGGATCGACATTATTCATTGGCGCATTG
CCTTGGCGCTGACGGACCTCTCGGCCCTTACACGGCTGTGTCGGGGAGCA
GGGCCGTTGAAAGCAGCTGTTTTATCTGAGGAGGAAACGGAATTAATGCA
AGGGTTACAGCTCAGGCTCGAGACCTTGGCAAGGAGAGCGTCGTCGCTAG
GGGTGCGCTTGATGATCGACGCAGAACAGAGTTACTTCCAACCGGCCATA
GATCACCTGGTCTTGGACTTAATGCAACGCCACAACAAAGGAAAGTTCGT
CGTCTATACAACGGTCCAGTGCTATCTGAAGGGGGCGCAAAGGAGAATTG
TCAGAGAGATGCAGCGGGCGCAGAGGCAGGACTATTTTTTCGCGGCCAAG
CTAGTCAGAGGCGCGTATATGATCACGGAGAGAAAGCGGGCGGAGGAGCT
GGGGTATCCGTCGCCTATTCAGGAAACGATTGAGGACACTCATGCCACAT
ACGACGGCTGTGTTCAGCTGTGCTTGGAAGCGATGGCACGGGGGGAGAAT
GTGGAGCTGTTGATTGCGTGTCACAACCAGGCAAGCATCGAGAAGGCTCT
TGTTGAAATGGAAAGGCTCAACCTGAAAGGGAACACGGCCGGTGTCTATT
TCGGACAGCTCTTAGGCATGGCTGACCATTTGACACTCACTCTGGGTGGC
GCAGGCTACAAGGCTTATAAATACGTGCCCTACGGCCTGGTAGGCCAAGT
CTTGCCATACCTCATTCGGCGCGCTCAAGAAAACTCCGATATGCTTGGAG
GAGTCGGACTAGAGATTGAACTTGTGGGAAAGGAGCTGCGTCGCAGGTTG
TTGGGGTAGGAAATGAAAGGAAGAAATGGATGAATATAAAGGGCTGGACT
TTGAAGGCCGGCGTGTGCGATGGGGGAGTATGCCACTGGTGAATAGGATT
TTTGTCGCATGAGACTAATTTTTGGGTGTGACATGAGGTGAAGAAGCGTC
AAGCATGGAAGAAATAGACCTTGACTACCCAGAAGAAGTTTACCGAAATA
CTCACCAGGTAGCAAGTTGCTTTGCGTCCCCTGTGTCGCAAGTTCTTGCG
GTAGGAAACAATAGAAAGAAGTGGATGAATGTAAAGGGTTGGATATTTGA
GACCGGCGTGTGGAGTGAGAACACTCTCCTGGTGATGAGGAGTTTTGTCG
CGTAAGACTGATTTTTGGGTGTGGTAGTGTTGGAAGAAGCGTCAAGCATG
GAAGAAAT back to topprotein sequence of jgi.p|Nanoce1779_2|581917 >mRNA_3372-protein ID=mRNA_3372-protein|Name=jgi.p|Nanoce1779_2|581917|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MSVCVVEMGKLFKKFDTQDKGYITRQEFLEGYDRYFLPSSSPSSSSGAAA
PVAGDGKDGDLAAQLLARLDPNGTDRIDIIHWRIALALTDLSALTRLCRG
AGPLKAAVLSEEETELMQGLQLRLETLARRASSLGVRLMIDAEQSYFQPA
IDHLVLDLMQRHNKGKFVVYTTVQCYLKGAQRRIVREMQRAQRQDYFFAA
KLVRGAYMITERKRAEELGYPSPIQETIEDTHATYDGCVQLCLEAMARGE
NVELLIACHNQASIEKALVEMERLNLKGNTAGVYFGQLLGMADHLTLTLG
GAGYKAYKYVPYGLVGQVLPYLIRRAQENSDMLGGVGLEIELVGKELRRR
LLG* back to topmRNA from alignment at scaffold_6:158391..160734- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3372 ID=mRNA_3372|Name=jgi.p|Nanoce1779_2|581917|organism=Nannochloropsis oceanica|type=mRNA|length=2344bp|location=Sequence derived from alignment at scaffold_6:158391..160734- (Nannochloropsis oceanica)
CGGCGGTGGAGGCGACGACGCAGGCGTACAAGGAAGGAGAGATTGCGTGT
CGTGTGTATGAGTATGAGAATGAGCGGACGTGTGATGCACATGTGCAGAC
TTTTTTGGAGTGCATCCATGCGGTCAAAGACGTGACACCTGAGGGGTTCG
CGGCAATTAAAGTCACTGCTCTAGGCAATCCGCAACTGCTAGAGAGGATG
TCAGTGTGCGTGGTGGAGATGGGGAAGCTCTTCAAGAAGTTTGACACACA
AGACAAGGGATACATCACCCGGCAAGAGTTCCTGGAAGGCTATGACAGGT
ACTTCTTGCCCTCCTCCTCCCCCTCTTCCTCTTCTGGTGCTGCTGCTCCT
GTGGCCGGTGATGGAAAAGACGGCGACCTGGCCGCCCAGCTCCTCGCGCG
GTTGGATCCAAACGGAACTGATCGGATCGACATTATTCATTGGCGCATTG
CCTTGGCGCTGACGGACCTCTCGGCCCTTACACGGCTGTGTCGGGGAGCA
GGGCCGTTGAAAGCAGCTGTTTTATCTGAGGAGGAAACGGAATTAATGCA
AGGGTTACAGCTCAGGCTCGAGACCTTGGCAAGGAGAGCGTCGTCGCTAG
GGGTGCGCTTGATGATCGACGCAGAACAGAGTTACTTCCAACCGGCCATA
GATCACCTGGTCTTGGACTTAATGCAACGCCACAACAAAGGAAAGTTCGT
CGTCTATACAACGGTCCAGTGCTATCTGAAGGGGGCGCAAAGGAGAATTG
TCAGAGAGATGCAGCGGGCGCAGAGGCAGGACTATTTTTTCGCGGCCAAG
CTAGTCAGAGGCGCGTATATGATCACGGAGAGAAAGCGGGCGGAGGAGCT
GGTAAGAGCGGAGGGAGTGGAGGGAGGGGAAGTTGGGGGACGAGGGAGGG
AAGTTGGGGAGGTCTTGACTGTCTTACTTACAGTAGAGGTGTGGGCTCTA
GGGTGACTGAGTGTTGACCGAGTGCAAACGCCTTTTTTGATATTGTGTCG
TTGTGGTTGATCTCTGATCTTTTCTTCTTCCCTCCCTTCTCAGGGGTATC
CGTCGCCTATTCAGGAAACGATTGAGGACACTCATGCCACATACGACGGC
TGTGTTCAGCTGTGCTTGGAAGCGATGGCACGGGGGGAGAATGTGGAGCT
GTTGATTGCGTGTCACAACCAGGTGAGCAAGCCAGCCCTCCCCTCCTTCT
CCCTATTATTTTTTCTTCGTTTCTAGAACGCTCTCTCCCTCCCTCTCTCC
CTCCCTCCTTCCCTCCTGTCCTCCCTTATGCCGGCAGGAGACTAAAGGAT
GGAGTGGCATTGAGATGCAGGTGAAATCGTGGCGTCTCTCTCACACTGGT
CGTTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCTTCCTTCACCCAGGCA
AGCATCGAGAAGGCTCTTGTTGAAATGGAAAGGCTCAACCTGAAAGGGAA
CACGGCCGGTGTCTATTTCGGACAGCTCTTAGGTACGGCAAGACGGGAGG
AAGAGAAGGAGATCTAGCGGACGGCTGGTAACGTTGAGAAGTACTTACCC
CTTCCTCCCCCCCTCCTCCCCCTTTCATTCCCTTCCACTCTCCTCACAGG
CATGGCTGACCATTTGACACTCACTCTGGGTGGCGCAGGCTACAAGGCTT
ATAAATGTTCGTAGATGGAAGATGGGAGGAAGAGGGGGGAGGTAGAAACG
TCATTTTCTCCGCTGCATTCCCTCCCCCAGTGCGTTTGAAGACAGGCACC
CTGTAGTTTACTCGGTTTCTTCCTCTTACCTTCCGCCTTGCTCTTTCCTT
CCCCACAGACGTGCCCTACGGCCTGGTAGGCCAAGTCTTGCCATACCTCA
TTCGGCGCGCTCAAGAAAACTCCGATATGCTTGGAGGAGTCGGACTAGAG
ATTGAACTTGTGGGAAAGGAGCTGCGTCGCAGGTTGTTGGGGTAGGAAAT
GAAAGGAAGAAATGGATGAATATAAAGGGCTGGACTTTGAAGGCCGGCGT
GTGCGATGGGGGAGTATGCCACTGGTGAATAGGATTTTTGTCGCATGAGA
CTAATTTTTGGGTGTGACATGAGGTGAAGAAGCGTCAAGCATGGAAGAAA
TAGACCTTGACTACCCAGAAGAAGTTTACCGAAATACTCACCAGGTAGCA
AGTTGCTTTGCGTCCCCTGTGTCGCAAGTTCTTGCGGTAGGAAACAATAG
AAAGAAGTGGATGAATGTAAAGGGTTGGATATTTGAGACCGGCGTGTGGA
GTGAGAACACTCTCCTGGTGATGAGGAGTTTTGTCGCGTAAGACTGATTT
TTGGGTGTGGTAGTGTTGGAAGAAGCGTCAAGCATGGAAGAAAT back to topCoding sequence (CDS) from alignment at scaffold_6:158391..160734- >mRNA_3372 ID=mRNA_3372|Name=jgi.p|Nanoce1779_2|581917|organism=Nannochloropsis oceanica|type=CDS|length=5310bp|location=Sequence derived from alignment at scaffold_6:158391..160734- (Nannochloropsis oceanica)
ACGTGCCCTACGGCCTGGTAGGCCAAGTCTTGCCATACCTCATTCGGCGC
GCTCAAGAAAACTCCGATATGCTTGGAGGAGTCGGACTAGAGATTGAACT
TGTGGGAAAGGAGCTGCGTCGCAGGTTGTTGGGGTAGGCATGGCTGACCA
TTTGACACTCACTCTGGGTGGCGCAGGCTACAAGGCTTATAAATGCAAGC
ATCGAGAAGGCTCTTGTTGAAATGGAAAGGCTCAACCTGAAAGGGAACAC
GGCCGGTGTCTATTTCGGACAGCTCTTAGGGGTATCCGTCGCCTATTCAG
GAAACGATTGAGGACACTCATGCCACATACGACGGCTGTGTTCAGCTGTG
CTTGGAAGCGATGGCACGGGGGGAGAATGTGGAGCTGTTGATTGCGTGTC
ACAACCAGATGTCAGTGTGCGTGGTGGAGATGGGGAAGCTCTTCAAGAAG
TTTGACACACAAGACAAGGGATACATCACCCGGCAAGAGTTCCTGGAAGG
CTATGACAGGTACTTCTTGCCCTCCTCCTCCCCCTCTTCCTCTTCTGGTG
CTGCTGCTCCTGTGGCCGGTGATGGAAAAGACGGCGACCTGGCCGCCCAG
CTCCTCGCGCGGTTGGATCCAAACGGAACTGATCGGATCGACATTATTCA
TTGGCGCATTGCCTTGGCGCTGACGGACCTCTCGGCCCTTACACGGCTGT
GTCGGGGAGCAGGGCCGTTGAAAGCAGCTGTTTTATCTGAGGAGGAAACG
GAATTAATGCAAGGGTTACAGCTCAGGCTCGAGACCTTGGCAAGGAGAGC
GTCGTCGCTAGGGGTGCGCTTGATGATCGACGCAGAACAGAGTTACTTCC
AACCGGCCATAGATCACCTGGTCTTGGACTTAATGCAACGCCACAACAAA
GGAAAGTTCGTCGTCTATACAACGGTCCAGTGCTATCTGAAGGGGGCGCA
AAGGAGAATTGTCAGAGAGATGCAGCGGGCGCAGAGGCAGGACTATTTTT
TCGCGGCCAAGCTAGTCAGAGGCGCGTATATGATCACGGAGAGAAAGCGG
GCGGAGGAGCTGACGTGCCCTACGGCCTGGTAGGCCAAGTCTTGCCATAC
CTCATTCGGCGCGCTCAAGAAAACTCCGATATGCTTGGAGGAGTCGGACT
AGAGATTGAACTTGTGGGAAAGGAGCTGCGTCGCAGGTTGTTGGGGTAGG
CATGGCTGACCATTTGACACTCACTCTGGGTGGCGCAGGCTACAAGGCTT
ATAAATGCAAGCATCGAGAAGGCTCTTGTTGAAATGGAAAGGCTCAACCT
GAAAGGGAACACGGCCGGTGTCTATTTCGGACAGCTCTTAGGGGTATCCG
TCGCCTATTCAGGAAACGATTGAGGACACTCATGCCACATACGACGGCTG
TGTTCAGCTGTGCTTGGAAGCGATGGCACGGGGGGAGAATGTGGAGCTGT
TGATTGCGTGTCACAACCAGATGTCAGTGTGCGTGGTGGAGATGGGGAAG
CTCTTCAAGAAGTTTGACACACAAGACAAGGGATACATCACCCGGCAAGA
GTTCCTGGAAGGCTATGACAGGTACTTCTTGCCCTCCTCCTCCCCCTCTT
CCTCTTCTGGTGCTGCTGCTCCTGTGGCCGGTGATGGAAAAGACGGCGAC
CTGGCCGCCCAGCTCCTCGCGCGGTTGGATCCAAACGGAACTGATCGGAT
CGACATTATTCATTGGCGCATTGCCTTGGCGCTGACGGACCTCTCGGCCC
TTACACGGCTGTGTCGGGGAGCAGGGCCGTTGAAAGCAGCTGTTTTATCT
GAGGAGGAAACGGAATTAATGCAAGGGTTACAGCTCAGGCTCGAGACCTT
GGCAAGGAGAGCGTCGTCGCTAGGGGTGCGCTTGATGATCGACGCAGAAC
AGAGTTACTTCCAACCGGCCATAGATCACCTGGTCTTGGACTTAATGCAA
CGCCACAACAAAGGAAAGTTCGTCGTCTATACAACGGTCCAGTGCTATCT
GAAGGGGGCGCAAAGGAGAATTGTCAGAGAGATGCAGCGGGCGCAGAGGC
AGGACTATTTTTTCGCGGCCAAGCTAGTCAGAGGCGCGTATATGATCACG
GAGAGAAAGCGGGCGGAGGAGCTGACGTGCCCTACGGCCTGGTAGGCCAA
GTCTTGCCATACCTCATTCGGCGCGCTCAAGAAAACTCCGATATGCTTGG
AGGAGTCGGACTAGAGATTGAACTTGTGGGAAAGGAGCTGCGTCGCAGGT
TGTTGGGGTAGGCATGGCTGACCATTTGACACTCACTCTGGGTGGCGCAG
GCTACAAGGCTTATAAATGCAAGCATCGAGAAGGCTCTTGTTGAAATGGA
AAGGCTCAACCTGAAAGGGAACACGGCCGGTGTCTATTTCGGACAGCTCT
TAGGGGTATCCGTCGCCTATTCAGGAAACGATTGAGGACACTCATGCCAC
ATACGACGGCTGTGTTCAGCTGTGCTTGGAAGCGATGGCACGGGGGGAGA
ATGTGGAGCTGTTGATTGCGTGTCACAACCAGATGTCAGTGTGCGTGGTG
GAGATGGGGAAGCTCTTCAAGAAGTTTGACACACAAGACAAGGGATACAT
CACCCGGCAAGAGTTCCTGGAAGGCTATGACAGGTACTTCTTGCCCTCCT
CCTCCCCCTCTTCCTCTTCTGGTGCTGCTGCTCCTGTGGCCGGTGATGGA
AAAGACGGCGACCTGGCCGCCCAGCTCCTCGCGCGGTTGGATCCAAACGG
AACTGATCGGATCGACATTATTCATTGGCGCATTGCCTTGGCGCTGACGG
ACCTCTCGGCCCTTACACGGCTGTGTCGGGGAGCAGGGCCGTTGAAAGCA
GCTGTTTTATCTGAGGAGGAAACGGAATTAATGCAAGGGTTACAGCTCAG
GCTCGAGACCTTGGCAAGGAGAGCGTCGTCGCTAGGGGTGCGCTTGATGA
TCGACGCAGAACAGAGTTACTTCCAACCGGCCATAGATCACCTGGTCTTG
GACTTAATGCAACGCCACAACAAAGGAAAGTTCGTCGTCTATACAACGGT
CCAGTGCTATCTGAAGGGGGCGCAAAGGAGAATTGTCAGAGAGATGCAGC
GGGCGCAGAGGCAGGACTATTTTTTCGCGGCCAAGCTAGTCAGAGGCGCG
TATATGATCACGGAGAGAAAGCGGGCGGAGGAGCTGACGTGCCCTACGGC
CTGGTAGGCCAAGTCTTGCCATACCTCATTCGGCGCGCTCAAGAAAACTC
CGATATGCTTGGAGGAGTCGGACTAGAGATTGAACTTGTGGGAAAGGAGC
TGCGTCGCAGGTTGTTGGGGTAGGCATGGCTGACCATTTGACACTCACTC
TGGGTGGCGCAGGCTACAAGGCTTATAAATGCAAGCATCGAGAAGGCTCT
TGTTGAAATGGAAAGGCTCAACCTGAAAGGGAACACGGCCGGTGTCTATT
TCGGACAGCTCTTAGGGGTATCCGTCGCCTATTCAGGAAACGATTGAGGA
CACTCATGCCACATACGACGGCTGTGTTCAGCTGTGCTTGGAAGCGATGG
CACGGGGGGAGAATGTGGAGCTGTTGATTGCGTGTCACAACCAGATGTCA
GTGTGCGTGGTGGAGATGGGGAAGCTCTTCAAGAAGTTTGACACACAAGA
CAAGGGATACATCACCCGGCAAGAGTTCCTGGAAGGCTATGACAGGTACT
TCTTGCCCTCCTCCTCCCCCTCTTCCTCTTCTGGTGCTGCTGCTCCTGTG
GCCGGTGATGGAAAAGACGGCGACCTGGCCGCCCAGCTCCTCGCGCGGTT
GGATCCAAACGGAACTGATCGGATCGACATTATTCATTGGCGCATTGCCT
TGGCGCTGACGGACCTCTCGGCCCTTACACGGCTGTGTCGGGGAGCAGGG
CCGTTGAAAGCAGCTGTTTTATCTGAGGAGGAAACGGAATTAATGCAAGG
GTTACAGCTCAGGCTCGAGACCTTGGCAAGGAGAGCGTCGTCGCTAGGGG
TGCGCTTGATGATCGACGCAGAACAGAGTTACTTCCAACCGGCCATAGAT
CACCTGGTCTTGGACTTAATGCAACGCCACAACAAAGGAAAGTTCGTCGT
CTATACAACGGTCCAGTGCTATCTGAAGGGGGCGCAAAGGAGAATTGTCA
GAGAGATGCAGCGGGCGCAGAGGCAGGACTATTTTTTCGCGGCCAAGCTA
GTCAGAGGCGCGTATATGATCACGGAGAGAAAGCGGGCGGAGGAGCTGAC
GTGCCCTACGGCCTGGTAGGCCAAGTCTTGCCATACCTCATTCGGCGCGC
TCAAGAAAACTCCGATATGCTTGGAGGAGTCGGACTAGAGATTGAACTTG
TGGGAAAGGAGCTGCGTCGCAGGTTGTTGGGGTAGGCATGGCTGACCATT
TGACACTCACTCTGGGTGGCGCAGGCTACAAGGCTTATAAATGCAAGCAT
CGAGAAGGCTCTTGTTGAAATGGAAAGGCTCAACCTGAAAGGGAACACGG
CCGGTGTCTATTTCGGACAGCTCTTAGGGGTATCCGTCGCCTATTCAGGA
AACGATTGAGGACACTCATGCCACATACGACGGCTGTGTTCAGCTGTGCT
TGGAAGCGATGGCACGGGGGGAGAATGTGGAGCTGTTGATTGCGTGTCAC
AACCAGATGTCAGTGTGCGTGGTGGAGATGGGGAAGCTCTTCAAGAAGTT
TGACACACAAGACAAGGGATACATCACCCGGCAAGAGTTCCTGGAAGGCT
ATGACAGGTACTTCTTGCCCTCCTCCTCCCCCTCTTCCTCTTCTGGTGCT
GCTGCTCCTGTGGCCGGTGATGGAAAAGACGGCGACCTGGCCGCCCAGCT
CCTCGCGCGGTTGGATCCAAACGGAACTGATCGGATCGACATTATTCATT
GGCGCATTGCCTTGGCGCTGACGGACCTCTCGGCCCTTACACGGCTGTGT
CGGGGAGCAGGGCCGTTGAAAGCAGCTGTTTTATCTGAGGAGGAAACGGA
ATTAATGCAAGGGTTACAGCTCAGGCTCGAGACCTTGGCAAGGAGAGCGT
CGTCGCTAGGGGTGCGCTTGATGATCGACGCAGAACAGAGTTACTTCCAA
CCGGCCATAGATCACCTGGTCTTGGACTTAATGCAACGCCACAACAAAGG
AAAGTTCGTCGTCTATACAACGGTCCAGTGCTATCTGAAGGGGGCGCAAA
GGAGAATTGTCAGAGAGATGCAGCGGGCGCAGAGGCAGGACTATTTTTTC
GCGGCCAAGCTAGTCAGAGGCGCGTATATGATCACGGAGAGAAAGCGGGC
GGAGGAGCTG back to top
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