jgi.p|Nanoce1779_2|564316, mRNA_3367 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|564316
Unique Name	mRNA_3367
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1857
Alignment location	scaffold_6:140000..142019 +

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Properties


Property Name	Value
TranscriptId	564402
Track	FilteredModels2
ProteinId	564316

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:140000..142019 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564316	gene_3367	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564316	mRNA_3367-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3367	CDS_3367	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:140000..142019+
coding sequence from alignment at scaffold_6:140000..142019+

mRNA sequence

>mRNA_3367 ID=mRNA_3367|Name=jgi.p|Nanoce1779_2|564316|organism=Nannochloropsis oceanica|type=mRNA|length=1857bp
ATGAAGAATTCAACTATGGGAGGGTCCGCCAAGGCCGATCATACCTTTTA
CGACTATATTGTGGTTGGCTCGGGTCCCGGCGGCGCCACGGTCGCCCGGC
TGCTGAGCGACGACCCGAAGAATAAGGTGCTTCTGATCGAAGCGGGCGAA
AATCGGGACAATGATCCTCCTATCACGGATTCAGCAGATGCTTGGATTGT
GCCTGTGGACTATGTTCCCGAGTATTTTTGGCAAATAGCTATGTTACATA
ACAATTTCGAATACGGGACGCATGAGTGGCCCGCTTACCCGTCGCGCCGT
GTGGTTGAGGAATTTTACGCAGAAGAGGTTGAGGAAGGCAAGCGTCGGCA
AGAACTTGAGGATGCCATCCTTAATCGGCGCTTTGGCGGAGGCAAGACGA
AGGGCGCATCGCGGCAACGTCGCGCGCTTGCTGAAAAGGTACACCGTCGT
CTACACGGCTACGAAGGAGAGATGTCGATGGAGCAGTACATGGGAGGACG
GCTGATGGGTGGGAGTAGCTCCATAAATGGTCAACAATATGTGTGGCCTA
CAAAACAGTTGCTTGAATCGATCCAGGCGGAAGTGGGTGGCGACGAAGAC
TGGTCGCCCGAAAACGTCTACGCTTTGCTGCGAGAACTTGAAAACTACGA
AGGCAGTTCTCCCCAAGCTAGGGGGACGGAAGGCCCCTTGAACGTAAAGC
AAGCGCCTGCAAATGCCACCGCATCCAAGGCCGGAAATGACTTTGTGGCT
TCCATCATAAACGCCACGGGAGTGTCTTTGTTGGATGACTATAACGATCC
AGAGACACCAATCGGTGCTTTCCTGCAATGGCAACTGACACAGAACCCTG
ACGGCAGTCGCGCGAGCTCTTCGACATCAATGCTGAACGCGGAGACCAGG
GCCCGAAAAAATTTGGTCATAAAGACACGGGCCACGGCAATGTATGTCAA
GTTCAAGAAGAATGTGGCTCAAGGCATCTACTACACACACGCTGGTATCG
GCCAAACTGCGTATGCCCGCAAGGAAGTCATCATTGCAGCGGGCCATCGC
TCGAGCCTGCTCCTGGAGAACTCTGGCGTTGGAGATGCTCGTGTAATTGA
GCCATTGCTTCACCGTGTGGGTTTCGAGATGGTGGCTGACGTGCCTGGCG
TAGGGGCTTACTTGGGCAATGATGGCGTCCTCATGTTAAAGTTGAATCGC
TCGGATTCGACGGAGCACCGAGATGCAACTCCCAATGACTTGTACTCCGG
TGGTGCTTTTCTACCATGGCCTAACGCCACTACGGCTAACCACTTTCCTC
AAACGACGCAGCGATTTTCCCAGCTATTAGGCACGGACCAGCTCGGTGGA
GAGGAAGGCCTAGACTTCTTCCACATTGGGGTCATTTTGCTCAACACATC
CTCGAATGGCTTTGCCCACATCCAAAGCGCGGATCCTTTGTACGCGCCGT
TGGTGACAGCTCGCACCTTTAACGACAAGATGGACAGAGCTAATTGGTGG
TACCTGCTTCGTTTCCAGGTCAAACCCATCATCGACCAGATGATGGAAAG
GGGATACACTCTGATCAGCCCTGAATACAGCATCTTCACTGACCCGACGA
AGAATGTAAACATGAAAAACTTGTTTGAGTATCTGTTTCAGAATTACATT
CCCGCCCATCACTGGTTCGGTACTTGTAAGATGGGCACGGACCCCAAACA
GGGGGCGGTCACTGACAGCGGAGGCCGAGTATATGGAGTGAAACGTCTAC
GCGTGGCGGATGCTTCCATTTTCCCAATCAAACTCGACGGCAACACAGGC
GTTCCTGCATACATTGCAGGTGGGGTGATTGCTAAGAAAATTCTCGCGGG
AAAGTAA

protein sequence of jgi.p|Nanoce1779_2|564316

>mRNA_3367-protein ID=mRNA_3367-protein|Name=jgi.p|Nanoce1779_2|564316|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MKNSTMGGSAKADHTFYDYIVVGSGPGGATVARLLSDDPKNKVLLIEAGE
NRDNDPPITDSADAWIVPVDYVPEYFWQIAMLHNNFEYGTHEWPAYPSRR
VVEEFYAEEVEEGKRRQELEDAILNRRFGGGKTKGASRQRRALAEKVHRR
LHGYEGEMSMEQYMGGRLMGGSSSINGQQYVWPTKQLLESIQAEVGGDED
WSPENVYALLRELENYEGSSPQARGTEGPLNVKQAPANATASKAGNDFVA
SIINATGVSLLDDYNDPETPIGAFLQWQLTQNPDGSRASSSTSMLNAETR
ARKNLVIKTRATAMYVKFKKNVAQGIYYTHAGIGQTAYARKEVIIAAGHR
SSLLLENSGVGDARVIEPLLHRVGFEMVADVPGVGAYLGNDGVLMLKLNR
SDSTEHRDATPNDLYSGGAFLPWPNATTANHFPQTTQRFSQLLGTDQLGG
EEGLDFFHIGVILLNTSSNGFAHIQSADPLYAPLVTARTFNDKMDRANWW
YLLRFQVKPIIDQMMERGYTLISPEYSIFTDPTKNVNMKNLFEYLFQNYI
PAHHWFGTCKMGTDPKQGAVTDSGGRVYGVKRLRVADASIFPIKLDGNTG
VPAYIAGGVIAKKILAGK*

mRNA from alignment at scaffold_6:140000..142019+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3367 ID=mRNA_3367|Name=jgi.p|Nanoce1779_2|564316|organism=Nannochloropsis oceanica|type=mRNA|length=2020bp|location=Sequence derived from alignment at scaffold_6:140000..142019+ (Nannochloropsis oceanica)
ATGAAGAATTCAACTATGGGAGGGTCCGCCAAGGCCGATCATACCTTTTA
CGACTATATTGTGGTTGGCTCGGGTCCCGGCGGCGCCACGGTCGCCCGGC
TGCTGAGCGACGACCCGAAGAATAAGGTGCTTCTGATCGAAGCGGGCGAA
AATCGGGACAATGATCCTCCTATCACGGATTCAGCAGATGCTTGGATTGT
GCCTGTGGACTATGTTCCCGAGTATTTTTGGCAAATAGCTATGTTACATA
ACAATTTCGAATACGGGACGCATGAGTGGCCCGCTTACCCGTCGCGCCGT
GTGGTTGAGGAATTTTACGCAGAAGAGGTTGAGGAAGGCAAGCGTCGGCA
AGAACTTGAGGATGCCATCCTTAATCGGCGCTTTGGCGGAGGCAAGACGA
AGGGCGCATCGCGGCAACGTCGCGCGCTTGCTGAAAAGGTACACCGTCGT
CTACACGGCTACGAAGGAGAGATGTCGATGGAGCAGTACATGGGAGGACG
GCTGATGGGTGGGAGTAGCTCCATAAATGGTCAACAATATGTGTGGCCTA
CAAAACAGTTGCTTGAATCGATCCAGGCGGAAGTGGGTGGCGACGAAGAC
TGGTCGCCCGAAAACGTCTACGCTTTGCTGCGAGAACTTGAAAACTACGA
AGGCAGTTCTCCCCAAGCTAGGGGGACGGAAGGCCCCTTGAACGTAAAGC
AAGCGCCTGCAAATGCCACCGCATCCAAGGCCGGAAATGACTTTGTGGCT
TCCATCATAAACGCCACGGGAGTGTCTTTGTTGGATGACTATAACGATCC
AGAGACACCAATCGGTGCTTTCCTGCAATGGCAACTGACACAGAACCCTG
ACGGCAGTCGCGCGAGCTCTTCGACATCAATGCTGAACGCGGAGACCAGG
GCCCGAAAAAATTTGGTCATAAAGACACGGGCCACGGCAATGTATGTCAA
GTTCAAGAAGAATGTGGCTCAAGGCATCTACTACACACACGCTGGTATCG
GCCAAACTGCGTATGCCCGCAAGGAAGTCATCATTGCAGCGGGCCATCGC
TCGAGCCTGCTCCTGGAGAACTCTGGCGTTGGAGATGCTCGTGTAATTGA
GCCATTGCTTCACCGTGTGGGTTTCGAGATGGTGGCTGACGTGCCTGGCG
TAGGGGCTTACTTGGGCAATGATGGCGTCCTCATGTTAAAGTTGAATCGC
TCGGATTCGACGGAGCACCGAGATGCAACTCCCAATGACTTGTACTCCGG
TGGTGCTTTTCTACCATGGCCTAACGCCACTACGGCTAACCACTTTCCTC
AAACGACGCAGCGATTTTCCCAGCTATTAGGCACGGACCAGCTCGGTGGA
GAGGAAGGCCTAGACTTCTTCCACATTGGGGTCATTTTGCTCAACACATC
CTCGAATGGCTTTGCCCACATCCAAAGCGCGGATCCTTTGTACGCGCCGT
TGGTGACAGCTCGCACCTTTAACGACAAGATGGACAGAGCTAATTGGTGG
TACCTGCTTCGTTTCCAGGTCAAACCCATCATCGACCAGATGATGGAAAG
GGGATACACTCTGATCAGCCCTGAATACAGCATCTTCACTGACCCGACGA
AGAATGTAAACATGAAAAACTTGTTTGAGTATCTGTTTCAGAATTACATT
CCCGCCCATCACTGGTTCGGTACTTGTAAGATGGGCACGGACCCCAAACA
GGGGGCGGTCACTGACAGCGGAGGCCGAGTATATGGAGTGAAACGTCTAC
GCGTGGCGGATGCTTCCATTTTCCCAATCAAACTCGACGGCAACACAGGT
GCGTTTTAAAAAGTGGAACAGAGAAGAAGGCAGGGAGGGAGGGGAAACAG
GTAGGCATATATCTTCCGTCGTCTATCCTTTAGGATACACGCAACTTTTA
AAAAAAGGATCAGTCGCACACTGATTTTCCGTCCTTATCTATCCATTTTA
TCTCAACACAGGCGTTCCTGCATACATTGCAGGTGGGGTGATTGCTAAGA
AAATTCTCGCGGGAAAGTAA

Coding sequence (CDS) from alignment at scaffold_6:140000..142019+

>mRNA_3367 ID=mRNA_3367|Name=jgi.p|Nanoce1779_2|564316|organism=Nannochloropsis oceanica|type=CDS|length=3714bp|location=Sequence derived from alignment at scaffold_6:140000..142019+ (Nannochloropsis oceanica)
ATGAAGAATTCAACTATGGGAGGGTCCGCCAAGGCCGATCATACCTTTTA
CGACTATATTGTGGTTGGCTCGGGTCCCGGCGGCGCCACGGTCGCCCGGC
TGCTGAGCGACGACCCGAAGAATAAGGTGCTTCTGATCGAAGCGGGCGAA
AATCGGGACAATGATCCTCCTATCACGGATTCAGCAGATGCTTGGATTGT
GCCTGTGGACTATGTTCCCGAGTATTTTTGGCAAATAGCTATGTTACATA
ACAATTTCGAATACGGGACGCATGAGTGGCCCGCTTACCCGTCGCGCCGT
GTGGTTGAGGAATTTTACGCAGAAGAGGTTGAGGAAGGCAAGCGTCGGCA
AGAACTTGAGGATGCCATCCTTAATCGGCGCTTTGGCGGAGGCAAGACGA
AGGGCGCATCGCGGCAACGTCGCGCGCTTGCTGAAAAGGTACACCGTCGT
CTACACGGCTACGAAGGAGAGATGTCGATGGAGCAGTACATGGGAGGACG
GCTGATGGGTGGGAGTAGCTCCATAAATGGTCAACAATATGTGTGGCCTA
CAAAACAGTTGCTTGAATCGATCCAGGCGGAAGTGGGTGGCGACGAAGAC
TGGTCGCCCGAAAACGTCTACGCTTTGCTGCGAGAACTTGAAAACTACGA
AGGCAGTTCTCCCCAAGCTAGGGGGACGGAAGGCCCCTTGAACGTAAAGC
AAGCGCCTGCAAATGCCACCGCATCCAAGGCCGGAAATGACTTTGTGGCT
TCCATCATAAACGCCACGGGAGTGTCTTTGTTGGATGACTATAACGATCC
AGAGACACCAATCGGTGCTTTCCTGCAATGGCAACTGACACAGAACCCTG
ACGGCAGTCGCGCGAGCTCTTCGACATCAATGCTGAACGCGGAGACCAGG
GCCCGAAAAAATTTGGTCATAAAGACACGGGCCACGGCAATGTATGTCAA
GTTCAAGAAGAATGTGGCTCAAGGCATCTACTACACACACGCTGGTATCG
GCCAAACTGCGTATGCCCGCAAGGAAGTCATCATTGCAGCGGGCCATCGC
TCGAGCCTGCTCCTGGAGAACTCTGGCGTTGGAGATGCTCGTGTAATTGA
GCCATTGCTTCACCGTGTGGGTTTCGAGATGGTGGCTGACGTGCCTGGCG
TAGGGGCTTACTTGGGCAATGATGGCGTCCTCATGTTAAAGTTGAATCGC
TCGGATTCGACGGAGCACCGAGATGCAACTCCCAATGACTTGTACTCCGG
TGGTGCTTTTCTACCATGGCCTAACGCCACTACGGCTAACCACTTTCCTC
AAACGACGCAGCGATTTTCCCAGCTATTAGGCACGGACCAGCTCGGTGGA
GAGGAAGGCCTAGACTTCTTCCACATTGGGGTCATTTTGCTCAACACATC
CTCGAATGGCTTTGCCCACATCCAAAGCGCGGATCCTTTGTACGCGCCGT
TGGTGACAGCTCGCACCTTTAACGACAAGATGGACAGAGCTAATTGGTGG
TACCTGCTTCGTTTCCAGGTCAAACCCATCATCGACCAGATGATGGAAAG
GGGATACACTCTGATCAGCCCTGAATACAGCATCTTCACTGACCCGACGA
AGAATGTAAACATGAAAAACTTGTTTGAGTATCTGTTTCAGAATTACATT
CCCGCCCATCACTGGTTCGGTACTTGTAAGATGGGCACGGACCCCAAACA
GGGGGCGGTCACTGACAGCGGAGGCCGAGTATATGGAGTGAAACGTCTAC
GCGTGGCGGATGCTTCCATTTTCCCAATCAAACTCGACGGCAACACAGGC
GTTCCTGCATACATTGCAGGTGGGGTGATTGCTAAGAAAATTCTCGCGGG
AAAGTAAATGAAGAATTCAACTATGGGAGGGTCCGCCAAGGCCGATCATA
CCTTTTACGACTATATTGTGGTTGGCTCGGGTCCCGGCGGCGCCACGGTC
GCCCGGCTGCTGAGCGACGACCCGAAGAATAAGGTGCTTCTGATCGAAGC
GGGCGAAAATCGGGACAATGATCCTCCTATCACGGATTCAGCAGATGCTT
GGATTGTGCCTGTGGACTATGTTCCCGAGTATTTTTGGCAAATAGCTATG
TTACATAACAATTTCGAATACGGGACGCATGAGTGGCCCGCTTACCCGTC
GCGCCGTGTGGTTGAGGAATTTTACGCAGAAGAGGTTGAGGAAGGCAAGC
GTCGGCAAGAACTTGAGGATGCCATCCTTAATCGGCGCTTTGGCGGAGGC
AAGACGAAGGGCGCATCGCGGCAACGTCGCGCGCTTGCTGAAAAGGTACA
CCGTCGTCTACACGGCTACGAAGGAGAGATGTCGATGGAGCAGTACATGG
GAGGACGGCTGATGGGTGGGAGTAGCTCCATAAATGGTCAACAATATGTG
TGGCCTACAAAACAGTTGCTTGAATCGATCCAGGCGGAAGTGGGTGGCGA
CGAAGACTGGTCGCCCGAAAACGTCTACGCTTTGCTGCGAGAACTTGAAA
ACTACGAAGGCAGTTCTCCCCAAGCTAGGGGGACGGAAGGCCCCTTGAAC
GTAAAGCAAGCGCCTGCAAATGCCACCGCATCCAAGGCCGGAAATGACTT
TGTGGCTTCCATCATAAACGCCACGGGAGTGTCTTTGTTGGATGACTATA
ACGATCCAGAGACACCAATCGGTGCTTTCCTGCAATGGCAACTGACACAG
AACCCTGACGGCAGTCGCGCGAGCTCTTCGACATCAATGCTGAACGCGGA
GACCAGGGCCCGAAAAAATTTGGTCATAAAGACACGGGCCACGGCAATGT
ATGTCAAGTTCAAGAAGAATGTGGCTCAAGGCATCTACTACACACACGCT
GGTATCGGCCAAACTGCGTATGCCCGCAAGGAAGTCATCATTGCAGCGGG
CCATCGCTCGAGCCTGCTCCTGGAGAACTCTGGCGTTGGAGATGCTCGTG
TAATTGAGCCATTGCTTCACCGTGTGGGTTTCGAGATGGTGGCTGACGTG
CCTGGCGTAGGGGCTTACTTGGGCAATGATGGCGTCCTCATGTTAAAGTT
GAATCGCTCGGATTCGACGGAGCACCGAGATGCAACTCCCAATGACTTGT
ACTCCGGTGGTGCTTTTCTACCATGGCCTAACGCCACTACGGCTAACCAC
TTTCCTCAAACGACGCAGCGATTTTCCCAGCTATTAGGCACGGACCAGCT
CGGTGGAGAGGAAGGCCTAGACTTCTTCCACATTGGGGTCATTTTGCTCA
ACACATCCTCGAATGGCTTTGCCCACATCCAAAGCGCGGATCCTTTGTAC
GCGCCGTTGGTGACAGCTCGCACCTTTAACGACAAGATGGACAGAGCTAA
TTGGTGGTACCTGCTTCGTTTCCAGGTCAAACCCATCATCGACCAGATGA
TGGAAAGGGGATACACTCTGATCAGCCCTGAATACAGCATCTTCACTGAC
CCGACGAAGAATGTAAACATGAAAAACTTGTTTGAGTATCTGTTTCAGAA
TTACATTCCCGCCCATCACTGGTTCGGTACTTGTAAGATGGGCACGGACC
CCAAACAGGGGGCGGTCACTGACAGCGGAGGCCGAGTATATGGAGTGAAA
CGTCTACGCGTGGCGGATGCTTCCATTTTCCCAATCAAACTCGACGGCAA
CACAGGCGTTCCTGCATACATTGCAGGTGGGGTGATTGCTAAGAAAATTC
TCGCGGGAAAGTAA

Synonyms

Publications