jgi.p|Nanoce1779_2|581824, mRNA_3344 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581824
Unique Name	mRNA_3344
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1087
Alignment location	scaffold_6:69413..71378 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581910
Track	FilteredModels2
ProteinId	581824

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:69413..71378 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581824	gene_3344	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581824	mRNA_3344-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3344	CDS_3344	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:69413..71378+
coding sequence from alignment at scaffold_6:69413..71378+

mRNA sequence

>mRNA_3344 ID=mRNA_3344|Name=jgi.p|Nanoce1779_2|581824|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp
GGGAGGGCGGGGGGGCGGGAGGAGGAGGAGGAGGAGAAGGGGGAGGAGGG
GGGATGGGTGCGGGAGGCACTGATTGAGACTTGCCTCTCCCTCGATCGGA
AACTGGCAGAGCTGCCGGACTTTCAGATGAAGGAGGAGCATACGATGGGG
GTGGGTAGCATGGCCCATAAGGTGCTTTCCTCGAAGCTGGTCTCGGCAGA
CTCGAGTGGGAGCACGGCGGTCATCTGCCTAGTGACTCCCTCTCTAGTCG
CCTGCGCAAATCTGGGAGACAGCCGGGCGGTGCTGCTGGCCAGGAAGGGA
GGGAGCGACGACGACATTGACGATCCTTCCGCCCCTCTCTCCCTGCATGC
CCTGCCCCTCTCCTTCGACCACAAACCCGAGTTGGAGAGCGAGAAACAGC
GGGTGGAGGCCGCGGGAGGGTTAGTGAAGGGAATGAATGTGGCCCCGGAC
AAGGACAGTGCGCCCGTGTTGATTTGGCGCGTCTATCCCCGTGAAGGTAC
GGCGGACTCTCTGGCTATGACCCGAGCCCTCGGCGATTTCGCCTACAAGC
GCAAGCTCGGCTTGGGGGTGGAGGAGCAGATGATCATCCCCTTGCCTGAC
GTCCATCTGCACCCGCGCGGGCCTGCGGACGAATTCCTGGTGTTGGCCTG
CGATGGTGTCTGGGACGTGTTTTCCAACGATGAGATCGCTGTCTATGTGG
AGAATCACGTGAATGCGACCAGAGACGGAGGACGGAAGGTAGGGGGAGGA
AGGGGGGGAAGGGAATGACGGGTGTGACTTCCCCATCACTCTCCTGGGTG
TTCAATCAGTCCTCCCTCTCTCCCTCCCTCCCTTTCAGTCCACCTACCTG
GCCGAGCTCGCGGACGACATCGTGAAGGAAAGCATGCGCCGAGGCTCCCG
AGACAACATTACGGCACTGGTGGTGCGTCTCCGCGCACCGGATGATGGGG
AACGCCGAACTTTGTTTATGTGACGAGAGAAGGGTGGTTGGGCAGGAGGG
AGGGAGGGAGGGAGGGAGGACTGGGTGATGATATGACGGTATGAGGATGA
TAGCCCTAGGAGGATGGTAATATAGTTTTAGGTAGAG

protein sequence of jgi.p|Nanoce1779_2|581824

>mRNA_3344-protein ID=mRNA_3344-protein|Name=jgi.p|Nanoce1779_2|581824|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MKEEHTMGVGSMAHKVLSSKLVSADSSGSTAVICLVTPSLVACANLGDSR
AVLLARKGGSDDDIDDPSAPLSLHALPLSFDHKPELESEKQRVEAAGGLV
KGMNVAPDKDSAPVLIWRVYPREGTADSLAMTRALGDFAYKRKLGLGVEE
QMIIPLPDVHLHPRGPADEFLVLACDGVWDVFSNDEIAVYVENHVNATRD
GGRKVGGGRGGRE*

mRNA from alignment at scaffold_6:69413..71378+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3344 ID=mRNA_3344|Name=jgi.p|Nanoce1779_2|581824|organism=Nannochloropsis oceanica|type=mRNA|length=1966bp|location=Sequence derived from alignment at scaffold_6:69413..71378+ (Nannochloropsis oceanica)
GGGAGGGCGGGGGGGCGGGAGGAGGAGGAGGAGGAGAAGGGGGAGGAGGG
GGGATGGGTGCGGGAGGCACTGATTGAGACTTGCCTCTCCCTCGATCGGA
AACTGGCAGAGCTGCCGGACTTTCAGGTGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGAGGTGGTCGGACCAATAATTAAATACCCTTTTTATTCAT
CCTTCCCCCTCTCCCTTCCCTCCTCCCTTCATCCCTCCCTCCCTCCCTCA
CCGCGCAGATGAAGGAGGAGCATACGATGGGGGTGGGTAGCATGGCCCAT
AAGGTGCTTTCCTCGAAGCTGGTCTCGGCAGGTAGGAAGGGAGGGTGGAA
GGGAGGGAGGGAGAGAGGGCGGGAAGAGCGGAAAGAGGCGAGTGTCTTGT
CTACTTGCCGCTGTCCTGGATCCTGTCATTTGGAGCGCTCGTCCAGGCCC
ACTTCCATTGTTATCCCTTCCTCCCTCCCTCCTCTAGACTCGAGTGGGAG
CACGGCGGTCATCTGCCTAGTGACTCCCTCTCTAGTCGCCTGCGCAAATC
TGGGAGACAGCCGGGCGGTGCTGCTGGCCAGGAAGGGAGGGAGGTACAGA
GGGAGGGAGGGAGGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAG
TCAGCATACGTGTTGGAAGAGCACCGACACCTACAGGGGAGACGCGCCTT
CCTTCGCGTCCTCATCTCCCTCCCTCCCTCCCTCTCTCCACCCCCCCCTC
CCTCCCTCCCCCCCTTCCCCTCACGTTTTCATTTACCCAGCGACGACGAC
ATTGACGATCCTTCCGCCCCTCTCTCCCTGCATGCCCTGCCCCTCTCCTT
CGACCACAAACCCGAGTTGGAGAGCGAGAAACAGCGGGTGGAGGCCGCGG
GAGGGTTAGTGAAGGGAATGAATGTGGCCCCGGACAAGGACAGTGCGCCC
GTGTTGATTTGGCGGTAGGCAAGGAGGGAGAGAGGGAGGGGAGGACGGAG
GAAAGGAAGTTAGTGGAGGCAGCTTGTGCCGCACTCGTTTGCCTCCAGCG
CTCATGTTTGTCACTTTCTCTCAACACCCCTCCCTCCGTCCCTCCCTCCC
TCCCTCCCTCAGCGTCTATCCCCGTGAAGGTACGGCGGACTCTCTGGCTA
TGACCCGAGCCCTCGGCGATTTCGCCTACAAGCGCAAGCTCGGCTTGGGG
GTGGAGGAGCAGATGGTACGGAAAAGGAGGGGGGGAAGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGGGCATGGGATCGAGGTGAGGGTACGACACAGATT
GACTTGTGTTGAATAAAATGTCAAGTCACAGAGCCACGGCCTGCTTGCAC
CGGCTATTCTTCCGCTTTGACTCCCTTTCTTCCTTTCTCTCTCCCTCCCT
CCCTCCCTCAGATCATCCCCTTGCCTGACGTCCATCTGCACCCGCGCGGG
CCTGCGGACGAATTCCTGGTGTTGGCCTGCGATGGTGTCTGGGACGTGTT
TTCCAACGATGAGATCGCTGTCTATGTGGAGAATCACGTGAATGCGACCA
GAGACGGAGGACGGAAGGTAGGGGGAGGAAGGGGGGGAAGGGAATGACGG
GTGTGACTTCCCCATCACTCTCCTGGGTGTTCAATCAGTCCTCCCTCTCT
CCCTCCCTCCCTTTCAGTCCACCTACCTGGCCGAGCTCGCGGACGACATC
GTGAAGGAAAGCATGCGCCGAGGCTCCCGAGACAACATTACGGCACTGGT
GGTGCGTCTCCGCGCACCGGATGATGGGGAACGCCGAACTTTGTTTATGT
GACGAGAGAAGGGTGGTTGGGCAGGAGGGAGGGAGGGAGGGAGGGAGGAC
TGGGTGATGATATGACGGTATGAGGATGATAGCCCTAGGAGGATGGTAAT
ATAGTTTTAGGTAGAG

Coding sequence (CDS) from alignment at scaffold_6:69413..71378+

>mRNA_3344 ID=mRNA_3344|Name=jgi.p|Nanoce1779_2|581824|organism=Nannochloropsis oceanica|type=CDS|length=3210bp|location=Sequence derived from alignment at scaffold_6:69413..71378+ (Nannochloropsis oceanica)
ATGAAGGAGGAGCATACGATGGGGGTGGGTAGCATGGCCCATAAGGTGCT
TTCCTCGAAGCTGGTCTCGGCAGACTCGAGTGGGAGCACGGCGGTCATCT
GCCTAGTGACTCCCTCTCTAGTCGCCTGCGCAAATCTGGGAGACAGCCGG
GCGGTGCTGCTGGCCAGGAAGGGAGGGAGCGACGACGACATTGACGATCC
TTCCGCCCCTCTCTCCCTGCATGCCCTGCCCCTCTCCTTCGACCACAAAC
CCGAGTTGGAGAGCGAGAAACAGCGGGTGGAGGCCGCGGGAGGGTTAGTG
AAGGGAATGAATGTGGCCCCGGACAAGGACAGTGCGCCCGTGTTGATTTG
GCGCGTCTATCCCCGTGAAGGTACGGCGGACTCTCTGGCTATGACCCGAG
CCCTCGGCGATTTCGCCTACAAGCGCAAGCTCGGCTTGGGGGTGGAGGAG
CAGATGATCATCCCCTTGCCTGACGTCCATCTGCACCCGCGCGGGCCTGC
GGACGAATTCCTGGTGTTGGCCTGCGATGGTGTCTGGGACGTGTTTTCCA
ACGATGAGATCGCTGTCTATGTGGAGAATCACGTGAATGCGACCAGAGAC
GGAGGACGGAAGGTAGGGGGAGGAAGGGGGGGAAGGGAATGAATGAAGGA
GGAGCATACGATGGGGGTGGGTAGCATGGCCCATAAGGTGCTTTCCTCGA
AGCTGGTCTCGGCAGACTCGAGTGGGAGCACGGCGGTCATCTGCCTAGTG
ACTCCCTCTCTAGTCGCCTGCGCAAATCTGGGAGACAGCCGGGCGGTGCT
GCTGGCCAGGAAGGGAGGGAGCGACGACGACATTGACGATCCTTCCGCCC
CTCTCTCCCTGCATGCCCTGCCCCTCTCCTTCGACCACAAACCCGAGTTG
GAGAGCGAGAAACAGCGGGTGGAGGCCGCGGGAGGGTTAGTGAAGGGAAT
GAATGTGGCCCCGGACAAGGACAGTGCGCCCGTGTTGATTTGGCGCGTCT
ATCCCCGTGAAGGTACGGCGGACTCTCTGGCTATGACCCGAGCCCTCGGC
GATTTCGCCTACAAGCGCAAGCTCGGCTTGGGGGTGGAGGAGCAGATGAT
CATCCCCTTGCCTGACGTCCATCTGCACCCGCGCGGGCCTGCGGACGAAT
TCCTGGTGTTGGCCTGCGATGGTGTCTGGGACGTGTTTTCCAACGATGAG
ATCGCTGTCTATGTGGAGAATCACGTGAATGCGACCAGAGACGGAGGACG
GAAGGTAGGGGGAGGAAGGGGGGGAAGGGAATGAATGAAGGAGGAGCATA
CGATGGGGGTGGGTAGCATGGCCCATAAGGTGCTTTCCTCGAAGCTGGTC
TCGGCAGACTCGAGTGGGAGCACGGCGGTCATCTGCCTAGTGACTCCCTC
TCTAGTCGCCTGCGCAAATCTGGGAGACAGCCGGGCGGTGCTGCTGGCCA
GGAAGGGAGGGAGCGACGACGACATTGACGATCCTTCCGCCCCTCTCTCC
CTGCATGCCCTGCCCCTCTCCTTCGACCACAAACCCGAGTTGGAGAGCGA
GAAACAGCGGGTGGAGGCCGCGGGAGGGTTAGTGAAGGGAATGAATGTGG
CCCCGGACAAGGACAGTGCGCCCGTGTTGATTTGGCGCGTCTATCCCCGT
GAAGGTACGGCGGACTCTCTGGCTATGACCCGAGCCCTCGGCGATTTCGC
CTACAAGCGCAAGCTCGGCTTGGGGGTGGAGGAGCAGATGATCATCCCCT
TGCCTGACGTCCATCTGCACCCGCGCGGGCCTGCGGACGAATTCCTGGTG
TTGGCCTGCGATGGTGTCTGGGACGTGTTTTCCAACGATGAGATCGCTGT
CTATGTGGAGAATCACGTGAATGCGACCAGAGACGGAGGACGGAAGGTAG
GGGGAGGAAGGGGGGGAAGGGAATGAATGAAGGAGGAGCATACGATGGGG
GTGGGTAGCATGGCCCATAAGGTGCTTTCCTCGAAGCTGGTCTCGGCAGA
CTCGAGTGGGAGCACGGCGGTCATCTGCCTAGTGACTCCCTCTCTAGTCG
CCTGCGCAAATCTGGGAGACAGCCGGGCGGTGCTGCTGGCCAGGAAGGGA
GGGAGCGACGACGACATTGACGATCCTTCCGCCCCTCTCTCCCTGCATGC
CCTGCCCCTCTCCTTCGACCACAAACCCGAGTTGGAGAGCGAGAAACAGC
GGGTGGAGGCCGCGGGAGGGTTAGTGAAGGGAATGAATGTGGCCCCGGAC
AAGGACAGTGCGCCCGTGTTGATTTGGCGCGTCTATCCCCGTGAAGGTAC
GGCGGACTCTCTGGCTATGACCCGAGCCCTCGGCGATTTCGCCTACAAGC
GCAAGCTCGGCTTGGGGGTGGAGGAGCAGATGATCATCCCCTTGCCTGAC
GTCCATCTGCACCCGCGCGGGCCTGCGGACGAATTCCTGGTGTTGGCCTG
CGATGGTGTCTGGGACGTGTTTTCCAACGATGAGATCGCTGTCTATGTGG
AGAATCACGTGAATGCGACCAGAGACGGAGGACGGAAGGTAGGGGGAGGA
AGGGGGGGAAGGGAATGAATGAAGGAGGAGCATACGATGGGGGTGGGTAG
CATGGCCCATAAGGTGCTTTCCTCGAAGCTGGTCTCGGCAGACTCGAGTG
GGAGCACGGCGGTCATCTGCCTAGTGACTCCCTCTCTAGTCGCCTGCGCA
AATCTGGGAGACAGCCGGGCGGTGCTGCTGGCCAGGAAGGGAGGGAGCGA
CGACGACATTGACGATCCTTCCGCCCCTCTCTCCCTGCATGCCCTGCCCC
TCTCCTTCGACCACAAACCCGAGTTGGAGAGCGAGAAACAGCGGGTGGAG
GCCGCGGGAGGGTTAGTGAAGGGAATGAATGTGGCCCCGGACAAGGACAG
TGCGCCCGTGTTGATTTGGCGCGTCTATCCCCGTGAAGGTACGGCGGACT
CTCTGGCTATGACCCGAGCCCTCGGCGATTTCGCCTACAAGCGCAAGCTC
GGCTTGGGGGTGGAGGAGCAGATGATCATCCCCTTGCCTGACGTCCATCT
GCACCCGCGCGGGCCTGCGGACGAATTCCTGGTGTTGGCCTGCGATGGTG
TCTGGGACGTGTTTTCCAACGATGAGATCGCTGTCTATGTGGAGAATCAC
GTGAATGCGACCAGAGACGGAGGACGGAAGGTAGGGGGAGGAAGGGGGGG
AAGGGAATGA

Synonyms

Publications