jgi.p|Nanoce1779_2|581824, gene_3344 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581824
Unique Namegene_3344
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:69413..71378 +

Link to JBrowse

Properties
Property NameValue
TranscriptId581910
ProteinId581824
Product nameProtein phosphatase 2C (PP2C)-like domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:69413..71378 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004721phosphoprotein phosphatase activity
GO:0004723calcium-dependent protein serine/threonine phosphatase activity
GO:0004724magnesium-dependent protein serine/threonine phosphatase activity
GO:0008420RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0008597calcium-dependent protein serine/threonine phosphatase regulator activity
GO:0017018myosin phosphatase activity
GO:0017020myosin phosphatase regulator activity
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005963magnesium-dependent protein serine/threonine phosphatase complex
GO:0017023myosin phosphatase complex
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581824mRNA_3344-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581824mRNA_3344Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|581824

>mRNA_3344-protein ID=mRNA_3344-protein|Name=jgi.p|Nanoce1779_2|581824|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MKEEHTMGVGSMAHKVLSSKLVSADSSGSTAVICLVTPSLVACANLGDSR
AVLLARKGGSDDDIDDPSAPLSLHALPLSFDHKPELESEKQRVEAAGGLV
KGMNVAPDKDSAPVLIWRVYPREGTADSLAMTRALGDFAYKRKLGLGVEE
QMIIPLPDVHLHPRGPADEFLVLACDGVWDVFSNDEIAVYVENHVNATRD
GGRKVGGGRGGRE*
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Synonyms
Publications