Properties
| Property Name | Value |
|---|
| TranscriptId | 554047 |
| Track | FilteredModels2 |
| ProteinId | 553961 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:1194028..1196165 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3317 ID=mRNA_3317|Name=jgi.p|Nanoce1779_2|553961|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp
AGAACGACAATACGTAGCGTCCTGTCTGAAACTCCGGCTTCCTTCTTTTG
TGTCTTCCACGGCCGTGCCCACCACATAACTCCCTGGAAGCTTCCAAAGC
TGCCTGTAGATATGCACCCGACCGCAGCGCCACCGCCACGTGCCCTGTCA
CCGTCTACCGTCCCATCTTCCTCAGCATGCCGGGCCAGAACTGGAGGCAT
CGCCTCCACTGGTATGGCATTTGCCTTTCCCAATCCGAGTCGGGTGCCCT
TAATCTCTACCAGCTTGAGGTCCTCGTCCCCCTCCTCCGCTGCCTCCCCG
TGCTCCCCACACGACACTACAAGTTTCACTTATCGCCTGCCTGATCTTGT
GCCTCTTGGTGGAGAGGATGCGAGGACATCTCAGCACATCATGGTGCATA
TAAAACCTGGACAGAGCGCCCAGCATCGACGCTTTTCAATGGCACCACTG
GCGTTTAGCCGAAGTCACAGCAGCAGCAGCGACAGCAGCAGTCCTGCTCG
TGTCAAGCCATTACACTCCGAACCCCAGGATGAAGGCAGTTGTGTGGGCA
CCGGCAGTGGCAGCAACAGCAGAGAGGCCTCCAGCACGCTCGTGCCTGCG
TCATCTTCCCCCTCCTCTTTCCCTCCTCCACCATCGTTCTCTCCCTCCAT
CTCCTCTGCGGAACGTGGCGCGACCTGTGTGACAGAGACTCTATCCACAA
CCGAGACTGACAACGGAAACCCATCCGCAGCAGACGACGCCGATACGACC
ACCCTCCTCTCCTCCTCCCCATCCTCCTCGCTCCCTTCCTTCACCATCAC
TACCTCCCTGGCCTTCCTCCTCCTCAACATCGTCACCATCCTATGGGGTA
GCCAACACGCCATCATCAAAATCGCTCTTCTCTCGTCCCCCGACTCACCA
GGAGCCTTCAATTTCCTAAGGTTCGGTCTGGCCTCCCTCTGCTTCCTCCC
TTGGACCCCTTCCCTCTTCCCTTCCTCCTCCCCTGCCTCCCTGTCGGGAG
TCGTGCCAGGCATAGAAGAGGAAGAGAGGCAGGGTCTTTGGAAAGCAGGT
GCCGAGCTGGGGGTGTGGATGTTCTTGGGATTCGCACTGCAGGCGTTGGG
GCTGCAGTGCACAAGCGCATCAAGGAGCGGGTTCTTGCTTTACTTGAACG
TAAAACTCGTGCCCTTGTTTGCCTGGCTGTTGCTTGGGAGACGGCCGACA
TTGGATGTCTTGGGCTCGGCGCTGGTGGCTTTTGTGGGTACTGCATTGCT
AAGCTTCGACGGGGGATCGATGCCGAATGTAGGAGACGCGTGGTCGCTCG
CGGCGGCGGCGGCTTCGGCGATGTTTATATTGCGGTTGGAGGGGGCGGCC
AAGGCGTATTCGTTGACGAGAGCGAAGGAGTTGAATTCTGCCACACTGTG
GGTGACAACGTTGTTGTGCTTGGGCTGGATGGGGGGAGGAGGGATGGAGG
GAGGAGGGGGCATGCTGGAGTTGGTGCAGGGGCTATGGAAGGAGGATTGG
AAGCAGATCGTGTATTTGGGGGTGGTAACGAGTGCGGTTTGCAATTGGAT
TCAAACGCTAGGCCAGCGGGAGGTGCCGGCAGAGAAGGCAGCGTTGATTT
ATGCGCTTGACCCAGTGTACGGCGCAGCTTTTGCGAGAGTGTTGCTGGGA
GAGAGCGAGGCCCTGGGCGTGAGGGGTTATATAGGGGCAGGGCTTGTAAC
GGCCGCGGCCGTTTTTGCGTCGCTCTGGGCGCGGTCAGGGGCTACAGGTG
GGGGGAGGGAGCAGCCGGAAGGGGTGGAGATGGTGAAGGGCGGCGAGGAG
GGGAGAGACGGCGGGGAAAGGGACGCAGTGAGGCAGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|553961 >mRNA_3317-protein ID=mRNA_3317-protein|Name=jgi.p|Nanoce1779_2|553961|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MHPTAAPPPRALSPSTVPSSSACRARTGGIASTGMAFAFPNPSRVPLIST
SLRSSSPSSAASPCSPHDTTSFTYRLPDLVPLGGEDARTSQHIMVHIKPG
QSAQHRRFSMAPLAFSRSHSSSSDSSSPARVKPLHSEPQDEGSCVGTGSG
SNSREASSTLVPASSSPSSFPPPPSFSPSISSAERGATCVTETLSTTETD
NGNPSAADDADTTTLLSSSPSSSLPSFTITTSLAFLLLNIVTILWGSQHA
IIKIALLSSPDSPGAFNFLRFGLASLCFLPWTPSLFPSSSPASLSGVVPG
IEEEERQGLWKAGAELGVWMFLGFALQALGLQCTSASRSGFLLYLNVKLV
PLFAWLLLGRRPTLDVLGSALVAFVGTALLSFDGGSMPNVGDAWSLAAAA
ASAMFILRLEGAAKAYSLTRAKELNSATLWVTTLLCLGWMGGGGMEGGGG
MLELVQGLWKEDWKQIVYLGVVTSAVCNWIQTLGQREVPAEKAALIYALD
PVYGAAFARVLLGESEALGVRGYIGAGLVTAAAVFASLWARSGATGGGRE
QPEGVEMVKGGEEGRDGGERDAVRQ* back to topmRNA from alignment at scaffold_7:1194028..1196165- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3317 ID=mRNA_3317|Name=jgi.p|Nanoce1779_2|553961|organism=Nannochloropsis oceanica|type=mRNA|length=2138bp|location=Sequence derived from alignment at scaffold_7:1194028..1196165- (Nannochloropsis oceanica)
AGAACGACAATACGTAGCGTCCTGTCTGAAACTCCGGCTTCCTTCTTTTG
TGTCTTCCACGGCCGTGCCCACCACATAACTCCCTGGAAGCTTCCAAAGC
TGCCTGTAGATATGCACCCGACCGCAGCGCCACCGCCACGTGCCCTGTCA
CCGTCTACCGTCCCATCTTCCTCAGCATGCCGGGCCAGAACTGGAGGCAT
CGCCTCCACTGGTATGGCATTTGCCTTTCCCAATCCGAGTCGGGTGCCCT
TAATCTCTACCAGCTTGAGGTCCTCGTCCCCCTCCTCCGCTGCCTCCCCG
TGCTCCCCACACGACACTACAAGTTTCACTTATCGCCTGCCTGATCTTGT
GCCTCTTGGTGGAGAGGATGCGAGGACATCTCAGCACATCATGGTGCATA
TAAAACCTGGACAGAGCGCCCAGCATCGACGCTTTTCAATGGCACCACTG
GCGTTTAGCCGAAGTCACAGCAGCAGCAGCGACAGCAGCAGGTACCGATG
TTGGGTCTTTGGGTGGGTGGGATATTGCATAAGCAGGCTGACGAAAATCG
CTAGATGGATAAGAGTGAGCGATCCATGTCTAACCACTGCCCTTTTTTGG
TGGGATCGGGATTTTGGAGGACAGACGTATGACATGTTGCGTCGGCACCC
GTGTCTGACCCCCTCAATTGACCTACACTCACACTATCCTCTCTCCCTCC
CCACTCTTACAACTCCGACAGTCCTGCTCGTGTCAAGCCATTACACTCCG
AACCCCAGGATGAAGGCAGTTGTGTGGGCACCGGCAGTGGCAGCAACAGC
AGAGAGGCCTCCAGCACGCTCGTGCCTGCGTCATCTTCCCCCTCCTCTTT
CCCTCCTCCACCATCGTTCTCTCCCTCCATCTCCTCTGCGGAACGTGGCG
CGACCTGTGTGACAGAGACTCTATCCACAACCGAGACTGACAACGGAAAC
CCATCCGCAGCAGACGACGCCGATACGACCACCCTCCTCTCCTCCTCCCC
ATCCTCCTCGCTCCCTTCCTTCACCATCACTACCTCCCTGGCCTTCCTCC
TCCTCAACATCGTCACCATCCTATGGGGTAGCCAACACGCCATCATCAAA
ATCGCTCTTCTCTCGTCCCCCGACTCACCAGGAGCCTTCAATTTCCTAAG
GTTCGGTCTGGCCTCCCTCTGCTTCCTCCCTTGGACCCCTTCCCTCTTCC
CTTCCTCCTCCCCTGCCTCCCTGTCGGGAGTCGTGCCAGGCATAGAAGAG
GAAGAGAGGCAGGGTCTTTGGAAAGCAGGTGCCGAGCTGGGGGTGTGGAT
GTTCTTGGGATTCGCACTGCAGGCGTTGGGGCTGCAGTGCACAAGCGCAT
CAAGGAGCGGGTTCTTGCTTTACTTGAACGTAAAACTCGTGCCCTTGTTT
GCCTGGCTGTTGCTTGGGAGACGGCCGACATTGGATGTCTTGGGCTCGGC
GCTGGTGGCTTTTGTGGGTACTGCATTGCTAAGCTTCGACGGGGGATCGA
TGCCGAATGTAGGAGACGCGTGGTCGCTCGCGGCGGCGGCGGCTTCGGCG
ATGTTTATATTGCGGTTGGAGGGGGCGGCCAAGGCGTATTCGTTGACGAG
AGCGAAGGAGTTGAATTCTGCCACACTGTGGGTGACAACGTTGTTGTGCT
TGGGCTGGATGGGGGTCGAGTATGCGTTTATGTTGCAGCATGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGATGGAGGGAGGAGGGATGGAGGG
AGGAGGGGGCATGCTGGAGTTGGTGCAGGGGCTATGGAAGGAGGATTGGA
AGCAGATCGTGTATTTGGGGGTGGTAACGAGTGCGGTTTGCAATTGGATT
CAAACGCTAGGCCAGCGGGAGGTGCCGGCAGAGAAGGCAGCGTTGATTTA
TGCGCTTGACCCAGTGTACGGCGCAGCTTTTGCGAGAGTGTTGCTGGGAG
AGAGCGAGGCCCTGGGCGTGAGGGGTTATATAGGGGCAGGGCTTGTAACG
GCCGCGGCCGTTTTTGCGTCGCTCTGGGCGCGGTCAGGGGCTACAGGTGG
GGGGAGGGAGCAGCCGGAAGGGGTGGAGATGGTGAAGGGCGGCGAGGAGG
GGAGAGACGGCGGGGAAAGGGACGCAGTGAGGCAGTGA back to topCoding sequence (CDS) from alignment at scaffold_7:1194028..1196165- >mRNA_3317 ID=mRNA_3317|Name=jgi.p|Nanoce1779_2|553961|organism=Nannochloropsis oceanica|type=CDS|length=5184bp|location=Sequence derived from alignment at scaffold_7:1194028..1196165- (Nannochloropsis oceanica)
GGAGGAGGGATGGAGGGAGGAGGGGGCATGCTGGAGTTGGTGCAGGGGCT
ATGGAAGGAGGATTGGAAGCAGATCGTGTATTTGGGGGTGGTAACGAGTG
CGGTTTGCAATTGGATTCAAACGCTAGGCCAGCGGGAGGTGCCGGCAGAG
AAGGCAGCGTTGATTTATGCGCTTGACCCAGTGTACGGCGCAGCTTTTGC
GAGAGTGTTGCTGGGAGAGAGCGAGGCCCTGGGCGTGAGGGGTTATATAG
GGGCAGGGCTTGTAACGGCCGCGGCCGTTTTTGCGTCGCTCTGGGCGCGG
TCAGGGGCTACAGGTGGGGGGAGGGAGCAGCCGGAAGGGGTGGAGATGGT
GAAGGGCGGCGAGGAGGGGAGAGACGGCGGGGAAAGGGACGCAGTGAGGC
AGTGATCCTGCTCGTGTCAAGCCATTACACTCCGAACCCCAGGATGAAGG
CAGTTGTGTGGGCACCGGCAGTGGCAGCAACAGCAGAGAGGCCTCCAGCA
CGCTCGTGCCTGCGTCATCTTCCCCCTCCTCTTTCCCTCCTCCACCATCG
TTCTCTCCCTCCATCTCCTCTGCGGAACGTGGCGCGACCTGTGTGACAGA
GACTCTATCCACAACCGAGACTGACAACGGAAACCCATCCGCAGCAGACG
ACGCCGATACGACCACCCTCCTCTCCTCCTCCCCATCCTCCTCGCTCCCT
TCCTTCACCATCACTACCTCCCTGGCCTTCCTCCTCCTCAACATCGTCAC
CATCCTATGGGGTAGCCAACACGCCATCATCAAAATCGCTCTTCTCTCGT
CCCCCGACTCACCAGGAGCCTTCAATTTCCTAAGGTTCGGTCTGGCCTCC
CTCTGCTTCCTCCCTTGGACCCCTTCCCTCTTCCCTTCCTCCTCCCCTGC
CTCCCTGTCGGGAGTCGTGCCAGGCATAGAAGAGGAAGAGAGGCAGGGTC
TTTGGAAAGCAGGTGCCGAGCTGGGGGTGTGGATGTTCTTGGGATTCGCA
CTGCAGGCGTTGGGGCTGCAGTGCACAAGCGCATCAAGGAGCGGGTTCTT
GCTTTACTTGAACGTAAAACTCGTGCCCTTGTTTGCCTGGCTGTTGCTTG
GGAGACGGCCGACATTGGATGTCTTGGGCTCGGCGCTGGTGGCTTTTGTG
GGTACTGCATTGCTAAGCTTCGACGGGGGATCGATGCCGAATGTAGGAGA
CGCGTGGTCGCTCGCGGCGGCGGCGGCTTCGGCGATGTTTATATTGCGGT
TGGAGGGGGCGGCCAAGGCGTATTCGTTGACGAGAGCGAAGGAGTTGAAT
TCTGCCACACTGTGGGTGACAACGTTGTTGTGCTTGGGCTGGATGGGGAT
GCACCCGACCGCAGCGCCACCGCCACGTGCCCTGTCACCGTCTACCGTCC
CATCTTCCTCAGCATGCCGGGCCAGAACTGGAGGCATCGCCTCCACTGGT
ATGGCATTTGCCTTTCCCAATCCGAGTCGGGTGCCCTTAATCTCTACCAG
CTTGAGGTCCTCGTCCCCCTCCTCCGCTGCCTCCCCGTGCTCCCCACACG
ACACTACAAGTTTCACTTATCGCCTGCCTGATCTTGTGCCTCTTGGTGGA
GAGGATGCGAGGACATCTCAGCACATCATGGTGCATATAAAACCTGGACA
GAGCGCCCAGCATCGACGCTTTTCAATGGCACCACTGGCGTTTAGCCGAA
GTCACAGCAGCAGCAGCGACAGCAGCAGGGAGGAGGGATGGAGGGAGGAG
GGGGCATGCTGGAGTTGGTGCAGGGGCTATGGAAGGAGGATTGGAAGCAG
ATCGTGTATTTGGGGGTGGTAACGAGTGCGGTTTGCAATTGGATTCAAAC
GCTAGGCCAGCGGGAGGTGCCGGCAGAGAAGGCAGCGTTGATTTATGCGC
TTGACCCAGTGTACGGCGCAGCTTTTGCGAGAGTGTTGCTGGGAGAGAGC
GAGGCCCTGGGCGTGAGGGGTTATATAGGGGCAGGGCTTGTAACGGCCGC
GGCCGTTTTTGCGTCGCTCTGGGCGCGGTCAGGGGCTACAGGTGGGGGGA
GGGAGCAGCCGGAAGGGGTGGAGATGGTGAAGGGCGGCGAGGAGGGGAGA
GACGGCGGGGAAAGGGACGCAGTGAGGCAGTGATCCTGCTCGTGTCAAGC
CATTACACTCCGAACCCCAGGATGAAGGCAGTTGTGTGGGCACCGGCAGT
GGCAGCAACAGCAGAGAGGCCTCCAGCACGCTCGTGCCTGCGTCATCTTC
CCCCTCCTCTTTCCCTCCTCCACCATCGTTCTCTCCCTCCATCTCCTCTG
CGGAACGTGGCGCGACCTGTGTGACAGAGACTCTATCCACAACCGAGACT
GACAACGGAAACCCATCCGCAGCAGACGACGCCGATACGACCACCCTCCT
CTCCTCCTCCCCATCCTCCTCGCTCCCTTCCTTCACCATCACTACCTCCC
TGGCCTTCCTCCTCCTCAACATCGTCACCATCCTATGGGGTAGCCAACAC
GCCATCATCAAAATCGCTCTTCTCTCGTCCCCCGACTCACCAGGAGCCTT
CAATTTCCTAAGGTTCGGTCTGGCCTCCCTCTGCTTCCTCCCTTGGACCC
CTTCCCTCTTCCCTTCCTCCTCCCCTGCCTCCCTGTCGGGAGTCGTGCCA
GGCATAGAAGAGGAAGAGAGGCAGGGTCTTTGGAAAGCAGGTGCCGAGCT
GGGGGTGTGGATGTTCTTGGGATTCGCACTGCAGGCGTTGGGGCTGCAGT
GCACAAGCGCATCAAGGAGCGGGTTCTTGCTTTACTTGAACGTAAAACTC
GTGCCCTTGTTTGCCTGGCTGTTGCTTGGGAGACGGCCGACATTGGATGT
CTTGGGCTCGGCGCTGGTGGCTTTTGTGGGTACTGCATTGCTAAGCTTCG
ACGGGGGATCGATGCCGAATGTAGGAGACGCGTGGTCGCTCGCGGCGGCG
GCGGCTTCGGCGATGTTTATATTGCGGTTGGAGGGGGCGGCCAAGGCGTA
TTCGTTGACGAGAGCGAAGGAGTTGAATTCTGCCACACTGTGGGTGACAA
CGTTGTTGTGCTTGGGCTGGATGGGGATGCACCCGACCGCAGCGCCACCG
CCACGTGCCCTGTCACCGTCTACCGTCCCATCTTCCTCAGCATGCCGGGC
CAGAACTGGAGGCATCGCCTCCACTGGTATGGCATTTGCCTTTCCCAATC
CGAGTCGGGTGCCCTTAATCTCTACCAGCTTGAGGTCCTCGTCCCCCTCC
TCCGCTGCCTCCCCGTGCTCCCCACACGACACTACAAGTTTCACTTATCG
CCTGCCTGATCTTGTGCCTCTTGGTGGAGAGGATGCGAGGACATCTCAGC
ACATCATGGTGCATATAAAACCTGGACAGAGCGCCCAGCATCGACGCTTT
TCAATGGCACCACTGGCGTTTAGCCGAAGTCACAGCAGCAGCAGCGACAG
CAGCAGGGAGGAGGGATGGAGGGAGGAGGGGGCATGCTGGAGTTGGTGCA
GGGGCTATGGAAGGAGGATTGGAAGCAGATCGTGTATTTGGGGGTGGTAA
CGAGTGCGGTTTGCAATTGGATTCAAACGCTAGGCCAGCGGGAGGTGCCG
GCAGAGAAGGCAGCGTTGATTTATGCGCTTGACCCAGTGTACGGCGCAGC
TTTTGCGAGAGTGTTGCTGGGAGAGAGCGAGGCCCTGGGCGTGAGGGGTT
ATATAGGGGCAGGGCTTGTAACGGCCGCGGCCGTTTTTGCGTCGCTCTGG
GCGCGGTCAGGGGCTACAGGTGGGGGGAGGGAGCAGCCGGAAGGGGTGGA
GATGGTGAAGGGCGGCGAGGAGGGGAGAGACGGCGGGGAAAGGGACGCAG
TGAGGCAGTGATCCTGCTCGTGTCAAGCCATTACACTCCGAACCCCAGGA
TGAAGGCAGTTGTGTGGGCACCGGCAGTGGCAGCAACAGCAGAGAGGCCT
CCAGCACGCTCGTGCCTGCGTCATCTTCCCCCTCCTCTTTCCCTCCTCCA
CCATCGTTCTCTCCCTCCATCTCCTCTGCGGAACGTGGCGCGACCTGTGT
GACAGAGACTCTATCCACAACCGAGACTGACAACGGAAACCCATCCGCAG
CAGACGACGCCGATACGACCACCCTCCTCTCCTCCTCCCCATCCTCCTCG
CTCCCTTCCTTCACCATCACTACCTCCCTGGCCTTCCTCCTCCTCAACAT
CGTCACCATCCTATGGGGTAGCCAACACGCCATCATCAAAATCGCTCTTC
TCTCGTCCCCCGACTCACCAGGAGCCTTCAATTTCCTAAGGTTCGGTCTG
GCCTCCCTCTGCTTCCTCCCTTGGACCCCTTCCCTCTTCCCTTCCTCCTC
CCCTGCCTCCCTGTCGGGAGTCGTGCCAGGCATAGAAGAGGAAGAGAGGC
AGGGTCTTTGGAAAGCAGGTGCCGAGCTGGGGGTGTGGATGTTCTTGGGA
TTCGCACTGCAGGCGTTGGGGCTGCAGTGCACAAGCGCATCAAGGAGCGG
GTTCTTGCTTTACTTGAACGTAAAACTCGTGCCCTTGTTTGCCTGGCTGT
TGCTTGGGAGACGGCCGACATTGGATGTCTTGGGCTCGGCGCTGGTGGCT
TTTGTGGGTACTGCATTGCTAAGCTTCGACGGGGGATCGATGCCGAATGT
AGGAGACGCGTGGTCGCTCGCGGCGGCGGCGGCTTCGGCGATGTTTATAT
TGCGGTTGGAGGGGGCGGCCAAGGCGTATTCGTTGACGAGAGCGAAGGAG
TTGAATTCTGCCACACTGTGGGTGACAACGTTGTTGTGCTTGGGCTGGAT
GGGGATGCACCCGACCGCAGCGCCACCGCCACGTGCCCTGTCACCGTCTA
CCGTCCCATCTTCCTCAGCATGCCGGGCCAGAACTGGAGGCATCGCCTCC
ACTGGTATGGCATTTGCCTTTCCCAATCCGAGTCGGGTGCCCTTAATCTC
TACCAGCTTGAGGTCCTCGTCCCCCTCCTCCGCTGCCTCCCCGTGCTCCC
CACACGACACTACAAGTTTCACTTATCGCCTGCCTGATCTTGTGCCTCTT
GGTGGAGAGGATGCGAGGACATCTCAGCACATCATGGTGCATATAAAACC
TGGACAGAGCGCCCAGCATCGACGCTTTTCAATGGCACCACTGGCGTTTA
GCCGAAGTCACAGCAGCAGCAGCGACAGCAGCAG back to top
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