jgi.p|Nanoce1779_2|629435, mRNA_3187 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629435
Unique Name	mRNA_3187
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3004
Alignment location	scaffold_7:877131..880134 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629521
Track	FilteredModels2
ProteinId	629435

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:877131..880134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629435	gene_3187	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629435	mRNA_3187-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3187	CDS_3187	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:877131..880134+
coding sequence from alignment at scaffold_7:877131..880134+

mRNA sequence

>mRNA_3187 ID=mRNA_3187|Name=jgi.p|Nanoce1779_2|629435|organism=Nannochloropsis oceanica|type=mRNA|length=3004bp
CTCGACTTTAATTTGAAAAAAGCGGATCATCGCCCGCTCCGAGGAAGAGG
CCGACGTAGGAGGACCGTTCTGCTTGCCCGCAGACGCCGCGTGCATGCGA
AGCGAAGTCAATCAGGCACCTCATTTCCCAGACAGGGGCGATCACACTCT
CCTTGGTAGTATCAGAGAGTAAACCACTCTCACCAAACCACTATTATTTC
CCCCCCGCTACCAACGCACCAGCAGGAGAGAAAACCGAGCCAAGAAAAAA
GACGTATACGTACGAAGGTACGCAACATACACACAATGATCGGACACGAG
GAGCATAACTCGGCCCCCACGGCGACCAAGCGCGTCTTGATTACAGGGGG
GGCAGGCCAGATTGCCTATGCGTTGCTCCCCCATCTCATTAGCGGGCGCG
TTTTCGGTTGCCAAACCCGCTTGATCGTGCACTTGCTCGACATCCCTGGG
ACGGAGAACGCCCTGCGCGGCGTGCAAATGGAGATTGAGGACGCAGCCTC
ACCCGTCGTCGTGGGCTTGGTGACGACAACAGATTTACGCACGGCCTTTA
CCGGGGTGGACTACGCGATTTTGTTGGGTGGGTTCCCTCGCTTGCCAGGA
ATGGAACGCAAAGAACTCCTCGCCAAGAACGTGGAGATCATAACCACGCA
CGCCGCCGCCCTGGACGATCACGCTAGCCGGGATGTCAAGGTTGTGGTGG
TGGCCAATCCAGCCAACACTCTAGCACTAGTAGCGAAGAAGCGGGCCTCA
AGCTTGCCTGCGGAGAACTTCTCGTGTTTGACTCGCCTTGATCACGATCG
CCTCCGTGGCATGGTGGCCAAGAAACTCACCTCCCTCCGCATCTCTTCTT
CTATCCCGGAGTGCAGCGCCGCCATCACAGCCACCCAGGTTCGCAATGTT
GCTATTTGGGGCAATCACTCCAGCACGCAAGTCCCGTCTGCCGGCCAAGC
CCAGGTGGAGCTTGGGGGAAAATGGGTTTCTATCCACGAAGTGTTGCAAG
AAAAAGACGCGGCGTGGCTACATGGTCAGTTGGTCACGAGCGTACAGCAG
CGGGGGGCGGAGATTTTGGCTGCCCGGAAACTGAGCTCGGCCTTGAGTGC
TGCCAGCGCGATTTCGAAACACGTTAGGGACTGGGTGCATGGGACGCCTG
AGGGGGAGTTTGTGAGTATGGGTGTGTTTGTGAGTAAGGACTGTACATAT
GACATCCCAGAGGACATATTCTTTTCGTTTCCTGTGAAATGCAAGGGTGG
GCAGTGGAAGGTGGTGGAGGGGTTGAGCTTGTCGGAGGAGACGAGGCGCA
GGGTTTTGTCGACCGTTACCGAGTTGGTGGAAGAGAGGGATTTGGCGCTG
TCCCTTGTAGGGGGGGCATCGCACTTGTAGAGAGGAGGAAAGTGCAATAT
GAGGAAAGGGAGGTCTAGGGTCTTGTAGCTGATGAGGAAGACGAGGGGCA
TGCAAGCGAGGGAAGGAGGGGAAGAAGAAAGACACATGCACATACATACA
CGGTATGTCAGTTTTGTGGAAGATTAAAGGGAAACAAGGAGAGGGAAGGC
GAGAGGGACAACGCGAGCAGTGGAGGGAAAATACGAAATACGTCATTAAA
AATTACAATGTCTTTCTCCCTTCTCTCTCTCCATCTCTCTCTGGTTGTGT
TTATAGTATAGCTAGAATGAGTGAAAATGTGGATTATAGAGGAAAGGAAG
GAATGCTGAGATAGGTGACAATTGACAGCGGCAGCAGCAGCAGGAACGCT
CATGGGTCGTCTTGGGGATACACAGAAAGCGAGCGACAAAGCATGACGAT
GGGGTCGGTAGGCCGAGGGGGTATTGAGGCCTTAATAGAGTGAAAAGAAC
AACAGAACACCGAATGGACGTGAGAAAAGAAGTGGATGTACGCGTCGCCA
GTCAAGCATTTCCTATTCCAGTATTCTACCTCTTGTTAAGACACCCACCC
CTCTCAGTGCCCCTCTCCTCCCTCCCTCCCTCTCTCCCTCCCTCCTTCCT
CCCCACTACTCCTCAATTTCCAAAACCCTCAAAATGGTCACCTCCCTTCT
AAACCCCTGCTTCCGCCTATAGTTTTTCCTCCGCTTTTTCTTAAAAACGA
TGATTTTGGCATCCTTCGCTTGCTCCTCCACCTGTAGTCTTACACGCGCA
TTCTGCACATACGGCCGACCAACAATTGTGTACTCTGGCGTCCCCACCAA
ATGCACTTCCGCACACTCAAAAATATAACCCGGCTCCAACCCCTCGATCT
TATCGGAGACAATTACGTCATCTTTTGTCACCTTGTACTGCTTGCCTTTC
AGGTCAATCACCACAAACCTAGCTTCTAGCCCCTCCGCTGCCAGCGCTTC
AACGTCGACAGGGAGACGACCATATGCCTCGCCTTCCCCTTTGCCCGTCG
GATGAAGAACGCGGGTGTGAACAGGCTGTGAAAAGAGATCGATGGAGAGA
GTGTTTTGTGATAAATATCTGAGAGGGAGGATGGAGAGAACATAAAAAGG
CAGTTTCAGTACATAATGCACTCATTTGCCCTTCATCACACATACCCCTG
CCGGCGGTGCCTGGTCCATGGACGCGGGAGGAGAGGTTCTTGGCATGCTG
GTTGCAGCGGTGGCAGTGGAGTCGGCGACAGAGAAGGAAAAGGAACGGCG
GGGCACGGATCGTGATTGTTGTGGTTGTGGTGGCGGGGATGATGCCGTGG
TGATGCTTCGCCAGCCGCAAGAAGATAGCGCGAGGGCTGAAGTCGACATA
GCGGCCCTTGTGCTAGACGAGGACGACGAGACAGCACTCGTCCCTCGTTG
AACAAGCCGTCTCAAGAGCATGACGACCTACGGCCTGTGTTGGTCATGGA
TGGGTTCGGTCAAACAAAGAGCAAAAGACGACAGAATCGGGCATCAGCAA
GCCTCCTCCCCTGGGCGATGACCGAAGGAGGATGCAACGGCGGACGAGCT
TCCATGCCTTGGCATGCGTATCGTGCGCGCGTTCCTTGACCCATGGGGTA
CAAT

protein sequence of jgi.p|Nanoce1779_2|629435

>mRNA_3187-protein ID=mRNA_3187-protein|Name=jgi.p|Nanoce1779_2|629435|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MIGHEEHNSAPTATKRVLITGGAGQIAYALLPHLISGRVFGCQTRLIVHL
LDIPGTENALRGVQMEIEDAASPVVVGLVTTTDLRTAFTGVDYAILLGGF
PRLPGMERKELLAKNVEIITTHAAALDDHASRDVKVVVVANPANTLALVA
KKRASSLPAENFSCLTRLDHDRLRGMVAKKLTSLRISSSIPECSAAITAT
QVRNVAIWGNHSSTQVPSAGQAQVELGGKWVSIHEVLQEKDAAWLHGQLV
TSVQQRGAEILAARKLSSALSAASAISKHVRDWVHGTPEGEFVSMGVFVS
KDCTYDIPEDIFFSFPVKCKGGQWKVVEGLSLSEETRRRVLSTVTELVEE
RDLALSLVGGASHL*

mRNA from alignment at scaffold_7:877131..880134+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3187 ID=mRNA_3187|Name=jgi.p|Nanoce1779_2|629435|organism=Nannochloropsis oceanica|type=mRNA|length=3004bp|location=Sequence derived from alignment at scaffold_7:877131..880134+ (Nannochloropsis oceanica)
CTCGACTTTAATTTGAAAAAAGCGGATCATCGCCCGCTCCGAGGAAGAGG
CCGACGTAGGAGGACCGTTCTGCTTGCCCGCAGACGCCGCGTGCATGCGA
AGCGAAGTCAATCAGGCACCTCATTTCCCAGACAGGGGCGATCACACTCT
CCTTGGTAGTATCAGAGAGTAAACCACTCTCACCAAACCACTATTATTTC
CCCCCCGCTACCAACGCACCAGCAGGAGAGAAAACCGAGCCAAGAAAAAA
GACGTATACGTACGAAGGTACGCAACATACACACAATGATCGGACACGAG
GAGCATAACTCGGCCCCCACGGCGACCAAGCGCGTCTTGATTACAGGGGG
GGCAGGCCAGATTGCCTATGCGTTGCTCCCCCATCTCATTAGCGGGCGCG
TTTTCGGTTGCCAAACCCGCTTGATCGTGCACTTGCTCGACATCCCTGGG
ACGGAGAACGCCCTGCGCGGCGTGCAAATGGAGATTGAGGACGCAGCCTC
ACCCGTCGTCGTGGGCTTGGTGACGACAACAGATTTACGCACGGCCTTTA
CCGGGGTGGACTACGCGATTTTGTTGGGTGGGTTCCCTCGCTTGCCAGGA
ATGGAACGCAAAGAACTCCTCGCCAAGAACGTGGAGATCATAACCACGCA
CGCCGCCGCCCTGGACGATCACGCTAGCCGGGATGTCAAGGTTGTGGTGG
TGGCCAATCCAGCCAACACTCTAGCACTAGTAGCGAAGAAGCGGGCCTCA
AGCTTGCCTGCGGAGAACTTCTCGTGTTTGACTCGCCTTGATCACGATCG
CCTCCGTGGCATGGTGGCCAAGAAACTCACCTCCCTCCGCATCTCTTCTT
CTATCCCGGAGTGCAGCGCCGCCATCACAGCCACCCAGGTTCGCAATGTT
GCTATTTGGGGCAATCACTCCAGCACGCAAGTCCCGTCTGCCGGCCAAGC
CCAGGTGGAGCTTGGGGGAAAATGGGTTTCTATCCACGAAGTGTTGCAAG
AAAAAGACGCGGCGTGGCTACATGGTCAGTTGGTCACGAGCGTACAGCAG
CGGGGGGCGGAGATTTTGGCTGCCCGGAAACTGAGCTCGGCCTTGAGTGC
TGCCAGCGCGATTTCGAAACACGTTAGGGACTGGGTGCATGGGACGCCTG
AGGGGGAGTTTGTGAGTATGGGTGTGTTTGTGAGTAAGGACTGTACATAT
GACATCCCAGAGGACATATTCTTTTCGTTTCCTGTGAAATGCAAGGGTGG
GCAGTGGAAGGTGGTGGAGGGGTTGAGCTTGTCGGAGGAGACGAGGCGCA
GGGTTTTGTCGACCGTTACCGAGTTGGTGGAAGAGAGGGATTTGGCGCTG
TCCCTTGTAGGGGGGGCATCGCACTTGTAGAGAGGAGGAAAGTGCAATAT
GAGGAAAGGGAGGTCTAGGGTCTTGTAGCTGATGAGGAAGACGAGGGGCA
TGCAAGCGAGGGAAGGAGGGGAAGAAGAAAGACACATGCACATACATACA
CGGTATGTCAGTTTTGTGGAAGATTAAAGGGAAACAAGGAGAGGGAAGGC
GAGAGGGACAACGCGAGCAGTGGAGGGAAAATACGAAATACGTCATTAAA
AATTACAATGTCTTTCTCCCTTCTCTCTCTCCATCTCTCTCTGGTTGTGT
TTATAGTATAGCTAGAATGAGTGAAAATGTGGATTATAGAGGAAAGGAAG
GAATGCTGAGATAGGTGACAATTGACAGCGGCAGCAGCAGCAGGAACGCT
CATGGGTCGTCTTGGGGATACACAGAAAGCGAGCGACAAAGCATGACGAT
GGGGTCGGTAGGCCGAGGGGGTATTGAGGCCTTAATAGAGTGAAAAGAAC
AACAGAACACCGAATGGACGTGAGAAAAGAAGTGGATGTACGCGTCGCCA
GTCAAGCATTTCCTATTCCAGTATTCTACCTCTTGTTAAGACACCCACCC
CTCTCAGTGCCCCTCTCCTCCCTCCCTCCCTCTCTCCCTCCCTCCTTCCT
CCCCACTACTCCTCAATTTCCAAAACCCTCAAAATGGTCACCTCCCTTCT
AAACCCCTGCTTCCGCCTATAGTTTTTCCTCCGCTTTTTCTTAAAAACGA
TGATTTTGGCATCCTTCGCTTGCTCCTCCACCTGTAGTCTTACACGCGCA
TTCTGCACATACGGCCGACCAACAATTGTGTACTCTGGCGTCCCCACCAA
ATGCACTTCCGCACACTCAAAAATATAACCCGGCTCCAACCCCTCGATCT
TATCGGAGACAATTACGTCATCTTTTGTCACCTTGTACTGCTTGCCTTTC
AGGTCAATCACCACAAACCTAGCTTCTAGCCCCTCCGCTGCCAGCGCTTC
AACGTCGACAGGGAGACGACCATATGCCTCGCCTTCCCCTTTGCCCGTCG
GATGAAGAACGCGGGTGTGAACAGGCTGTGAAAAGAGATCGATGGAGAGA
GTGTTTTGTGATAAATATCTGAGAGGGAGGATGGAGAGAACATAAAAAGG
CAGTTTCAGTACATAATGCACTCATTTGCCCTTCATCACACATACCCCTG
CCGGCGGTGCCTGGTCCATGGACGCGGGAGGAGAGGTTCTTGGCATGCTG
GTTGCAGCGGTGGCAGTGGAGTCGGCGACAGAGAAGGAAAAGGAACGGCG
GGGCACGGATCGTGATTGTTGTGGTTGTGGTGGCGGGGATGATGCCGTGG
TGATGCTTCGCCAGCCGCAAGAAGATAGCGCGAGGGCTGAAGTCGACATA
GCGGCCCTTGTGCTAGACGAGGACGACGAGACAGCACTCGTCCCTCGTTG
AACAAGCCGTCTCAAGAGCATGACGACCTACGGCCTGTGTTGGTCATGGA
TGGGTTCGGTCAAACAAAGAGCAAAAGACGACAGAATCGGGCATCAGCAA
GCCTCCTCCCCTGGGCGATGACCGAAGGAGGATGCAACGGCGGACGAGCT
TCCATGCCTTGGCATGCGTATCGTGCGCGCGTTCCTTGACCCATGGGGTA
CAAT

Coding sequence (CDS) from alignment at scaffold_7:877131..880134+

>mRNA_3187 ID=mRNA_3187|Name=jgi.p|Nanoce1779_2|629435|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_7:877131..880134+ (Nannochloropsis oceanica)
ATGATCGGACACGAGGAGCATAACTCGGCCCCCACGGCGACCAAGCGCGT
CTTGATTACAGGGGGGGCAGGCCAGATTGCCTATGCGTTGCTCCCCCATC
TCATTAGCGGGCGCGTTTTCGGTTGCCAAACCCGCTTGATCGTGCACTTG
CTCGACATCCCTGGGACGGAGAACGCCCTGCGCGGCGTGCAAATGGAGAT
TGAGGACGCAGCCTCACCCGTCGTCGTGGGCTTGGTGACGACAACAGATT
TACGCACGGCCTTTACCGGGGTGGACTACGCGATTTTGTTGGGTGGGTTC
CCTCGCTTGCCAGGAATGGAACGCAAAGAACTCCTCGCCAAGAACGTGGA
GATCATAACCACGCACGCCGCCGCCCTGGACGATCACGCTAGCCGGGATG
TCAAGGTTGTGGTGGTGGCCAATCCAGCCAACACTCTAGCACTAGTAGCG
AAGAAGCGGGCCTCAAGCTTGCCTGCGGAGAACTTCTCGTGTTTGACTCG
CCTTGATCACGATCGCCTCCGTGGCATGGTGGCCAAGAAACTCACCTCCC
TCCGCATCTCTTCTTCTATCCCGGAGTGCAGCGCCGCCATCACAGCCACC
CAGGTTCGCAATGTTGCTATTTGGGGCAATCACTCCAGCACGCAAGTCCC
GTCTGCCGGCCAAGCCCAGGTGGAGCTTGGGGGAAAATGGGTTTCTATCC
ACGAAGTGTTGCAAGAAAAAGACGCGGCGTGGCTACATGGTCAGTTGGTC
ACGAGCGTACAGCAGCGGGGGGCGGAGATTTTGGCTGCCCGGAAACTGAG
CTCGGCCTTGAGTGCTGCCAGCGCGATTTCGAAACACGTTAGGGACTGGG
TGCATGGGACGCCTGAGGGGGAGTTTGTGAGTATGGGTGTGTTTGTGAGT
AAGGACTGTACATATGACATCCCAGAGGACATATTCTTTTCGTTTCCTGT
GAAATGCAAGGGTGGGCAGTGGAAGGTGGTGGAGGGGTTGAGCTTGTCGG
AGGAGACGAGGCGCAGGGTTTTGTCGACCGTTACCGAGTTGGTGGAAGAG
AGGGATTTGGCGCTGTCCCTTGTAGGGGGGGCATCGCACTTGTAG

Synonyms

Publications