jgi.p|Nanoce1779_2|584840, mRNA_3177 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584840
Unique Name	mRNA_3177
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2135
Alignment location	scaffold_7:856567..858920 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584926
Track	FilteredModels2
ProteinId	584840

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:856567..858920 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584840	gene_3177	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584840	mRNA_3177-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3177	CDS_3177	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:856567..858920+
coding sequence from alignment at scaffold_7:856567..858920+

mRNA sequence

>mRNA_3177 ID=mRNA_3177|Name=jgi.p|Nanoce1779_2|584840|organism=Nannochloropsis oceanica|type=mRNA|length=2135bp
GAGACTGGCAGAACGTGCGTCTTGGGCATTGCCAAGCTCTAGTGCCAGCA
CCAGCACCAGCACCAGCACCAGCACCAGCAGCACCAGCACGATAAAGAAG
GAAGGCACCCCATTCTCACTCTCCGAAGCGTCGGGGCCCTCTCTTACTAG
CTGGGAGTCTGTTATTTATGCGGAAGGACAAGAGCAATGGAATGAGATCC
GTCGTATTGTCAGTTGTCTGAAGCGACTCTTTTTGAAGGACACGCAGGTG
GTGGTACAAGACTCCTACTCCTCAATTTTACCTGCTCCTGCGCCTGCCGT
GGCACCACCCTCGCCGGCAGCAGCAGCAGCGAAAGGAACAGCAATAGCGA
ATCCAGTCATGAGGCCACAGATGGCATGGGCTACATCATTCGGAACCAAG
CTATGTTGTTTTGATACCCGCGACGCTTACCTTTCGGAGGGGCAGGAGAA
GGGTGCTGGGATAGCCCGCGTGGCCGAGGCCGTGTTACGATAAATGGGAT
AGATTTTGCAATCATATCGTTGTTTTTGCGTTGGCTTTTGTTACCTTAAA
TGTGGTCATTCGGGCAGGCATGTGAAAATTGTAATACTTGATGCAAACGT
GTGAGTCATATGACAAATAAGAAATGTACAAAACACAAGAATAAAGCAAA
ATATTATGTTGTATCGGGAAACCCCGATTCTTTTTGCTCGTGTACTCACT
CTTCTTTGACATTCTCCTCTTCCTTTTCCTCCAACCTTCACCAGGAATAC
AATCTTTCTAGCCTCGTACATGCGCTTTGCCAGTCTTGCATCTGCCGCCG
CCGCAACCGCTGCCAGCAGCAGCCGCCTGCCCATGAACCCTCTCGTCGCA
GTGGGGCAACTCACCTCCACGGAAGACCGAGACCAGAACATCCGACGCTG
TAGAGACCTAGCTGTTCGCGCAAAAAAAGCGGGGGCCGCCTTGCTCTGCT
TGCCGGAATGCTTCTCACTTGTAGGCTCCTCCTGGCGAGAAACTGTCGCG
GCGGGACAGCCCATTGAAGGACCCATGGTGAGTGAAATGCGTACTTTGGC
CAAGGAGCAAGGTCTGTGGCTTTCTCTCGGAGGGTTTCCTGAGAAGATGC
CATCACCTCAGAATTCGAAAATAGAAGACAGCGGGGATGAGAACGAGAGA
GTGTATAACACCCACATTGTCCTCGACGACAAAGGAGATATCAAAGCACT
CTACCGTAAAATCCACCTGTTTGACGTCAACTTTCCAAATGGCCCAGTGT
TGCAAGAAAGCAAATATACTGCTCCCGGCGCCGAGGTGGTAGTCATTGAT
TCCCCCATCGGCCGACTGGGTCTCTCCACCTGCTACGACCTCCGTTTTCC
CGAATTGTACCAGGCATTGGTCAAAAGAGGCGCAGAGGTCCTTCTTGTCC
CATCAGCATTTACAGTCTTGACAGGACAAGCCCATTGGGAGATCTTACTT
CGGGCCAGAGCTATTGAAACGCAATGCTACGTCTTGGCGTCCGCACAAGC
AGGACAGCACAACGAAAAACGGGCGTCGTACGGGCACTCTTTAATAGTAG
ACCCGTGGGGGAAAGTGATGGAAGATGCGGGGGGTGACGCATCACCGGCA
CTGGTGATGGCGGAGATTGATTTAAAGAGACTACATGAGATAAGGGCAAA
GATTCCCGTACAGTTGCATCGACGGCGGGATGTGTTTTTCGGGGTAAGCG
GTGTTGGTCATAGTAAAGGAGGAGGAGGAGAAGGAGGAGGAGGAATTGGG
ACTGCGCCATCGGTGTGATTATAGGAAGATCCTTCAACCCCCATTATGTA
TCCATTTATCTCGATGGCGGCGTGCTGGCAACCTTCCCGGCAGCCGCAGC
CGTCGTCGCTGCCGCTCCGGCCGTCGTGCCCGATGTGTGGATGACCCTCC
CAGACTTATCCTTTCGCTCCAAAACAGTGATTGCCTGCGTGTAGACCTGA
TACGCTGGCACGAGAATCATCGCGTCCTCGTCCGTGAGTAAACGGACATA
GCGCGAGTCGACCGACAGGACAGTGCCTTGGTAGGAACCGACCTTGATTT
TCCACCCTGTGCGAAAGGGCCGTTGGAAGACAAGCAGGATCCCAGAAAGG
ACATTGGTGGCAATCTCTTTGAGAGCAAAACCGAC

protein sequence of jgi.p|Nanoce1779_2|584840

>mRNA_3177-protein ID=mRNA_3177-protein|Name=jgi.p|Nanoce1779_2|584840|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MRFASLASAAAATAASSSRLPMNPLVAVGQLTSTEDRDQNIRRCRDLAVR
AKKAGAALLCLPECFSLVGSSWRETVAAGQPIEGPMVSEMRTLAKEQGLW
LSLGGFPEKMPSPQNSKIEDSGDENERVYNTHIVLDDKGDIKALYRKIHL
FDVNFPNGPVLQESKYTAPGAEVVVIDSPIGRLGLSTCYDLRFPELYQAL
VKRGAEVLLVPSAFTVLTGQAHWEILLRARAIETQCYVLASAQAGQHNEK
RASYGHSLIVDPWGKVMEDAGGDASPALVMAEIDLKRLHEIRAKIPVQLH
RRRDVFFGVSGVGHSKGGGGEGGGGIGTAPSV*

mRNA from alignment at scaffold_7:856567..858920+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3177 ID=mRNA_3177|Name=jgi.p|Nanoce1779_2|584840|organism=Nannochloropsis oceanica|type=mRNA|length=2354bp|location=Sequence derived from alignment at scaffold_7:856567..858920+ (Nannochloropsis oceanica)
GAGACTGGCAGAACGTGCGTCTTGGGCATTGCCAAGCTCTAGTGCCAGCA
CCAGCACCAGCACCAGCACCAGCACCAGCAGCACCAGCACGATAAAGAAG
GAAGGCACCCCATTCTCACTCTCCGAAGCGTCGGGGCCCTCTCTTACTAG
CTGGGAGTCTGTTATTTATGCGGAAGGACAAGAGCAATGGAATGAGATCC
GTCGTATTGTCAGTTGTCTGAAGCGACTCTTTTTGAAGGACACGCAGGTG
GTGGTACAAGACTCCTACTCCTCAATTTTACCTGCTCCTGCGCCTGCCGT
GGCACCACCCTCGCCGGCAGCAGCAGCAGCGAAAGGAACAGCAATAGCGA
ATCCAGTCATGAGGCCACAGATGGCATGGGCTACATCATTCGGAACCAAG
CTATGTTGTTTTGATACCCGCGACGCTTACCTTTCGGAGGGGCAGGAGAA
GGGTGCTGGGATAGCCCGCGTGGCCGAGGCCGTGTTACGATAAATGGGAT
AGATTTTGCAATCATATCGTTGTTTTTGCGTTGGCTTTTGTTACCTTAAA
TGTGGTCATTCGGGCAGGCATGTGAAAATTGTAATACTTGATGCAAACGT
GTGAGTCATATGACAAATAAGAAATGTACAAAACACAAGAATAAAGCAAA
ATATTATGTTGTATCGGGAAACCCCGATTCTTTTTGCTCGTGTACTCACT
CTTCTTTGACATTCTCCTCTTCCTTTTCCTCCAACCTTCACCAGGAATAC
AATCTTTCTAGCCTCGTACATGCGCTTTGCCAGTCTTGCATCTGCCGCCG
CCGCAACCGCTGCCAGCAGCAGCCGCCTGCCCATGAACCCTCTCGTCGCA
GTGGGGCAACTCACCTCCACGGAAGACCGAGACCAGAACATCCGACGCTG
TAGAGACCTAGCTGTTCGCGCAAAAAAAGCGGGGGCCGCCTTGCTCTGCT
TGCCGGAATGCTTCTCACTTGTAGGCTCCTCCTGGCGAGAAACTGTCGCG
GCGGGACAGCCCATTGAAGGACCCATGGTGAGTGAAATGCGTACTTTGGC
CAAGGAGCAAGGTCTGTGGCTTTCTCTCGGAGGGTTTCCTGAGAAGATGC
CATCACCTCAGAATTCGAAAATAGAAGACAGCGGGGATGAGAACGAGAGA
GTGTATAACACCCACATTGTCCTCGACGACAAAGGAGATATCAAAGCACT
CTACCGTAAAATCCACCTGTTTGACGTCAACTTTCCAAATGGCCCAGTGT
TGCAAGAAAGCAAATATACTGCTCCCGGCGCCGAGGTGGTAGTCATTGAT
TCCCCCATCGGCCGACTGGGTCTCTCCACCTGCTACGACCTCCGTTTTCC
CGAATTGTACCAGGCATTGGTCAAAAGAGGCGCAGAGGTCCTTCTTGTCC
CATCAGCATTTACAGTCTTGACAGGACAAGCCCATTGGGAGATCTTACTT
CGGGCCAGAGCTATTGAAACGCAATGCTACGTCTTGGCGTCCGCACAAGC
AGGACAGCACAACGAAAAACGGGCGTCGTACGGGCACTCTTTAATAGTAG
ACCCGTGGGGGAAAGTGATGGAAGATGCGGGGGGTGACGCATCACCGGCA
CTGGTGATGGCGGAGATTGATTTAAAGAGACTACATGAGATAAGGGCAAA
GATTCCCGTACAGTTGCATCGACGGCGGGATGTGTTTTTCGGGGTAAGCG
GTGTTGGTCATAGTAAAGGAGGAGGAGGAGAAGGAGGAGGAGGAATTGGG
ACTGCGCCATCGGTGTGATTATAGGAAGATCTGTATAGAAACGACGCGAC
GATGTTCGTTGTGAGTAAGAATAAATGATGTGTAATTATCTTTCAGTTCA
TTTGTTGTTTTTAGTTCCCTGTAAAAATGCTGACCTTTTACTTATCTACA
CTCGTCAAAACATGTCTCTTCCTCTTTCTCATTATCAAAACTCTGCCCTT
ACGCATTCACTAAACCACGATCAATCCTCTTCCGCTTTGCTTCACGTACC
CTTCAACCCCCATTATGTATCCATTTATCTCGATGGCGGCGTGCTGGCAA
CCTTCCCGGCAGCCGCAGCCGTCGTCGCTGCCGCTCCGGCCGTCGTGCCC
GATGTGTGGATGACCCTCCCAGACTTATCCTTTCGCTCCAAAACAGTGAT
TGCCTGCGTGTAGACCTGATACGCTGGCACGAGAATCATCGCGTCCTCGT
CCGTGAGTAAACGGACATAGCGCGAGTCGACCGACAGGACAGTGCCTTGG
TAGGAACCGACCTTGATTTTCCACCCTGTGCGAAAGGGCCGTTGGAAGAC
AAGCAGGATCCCAGAAAGGACATTGGTGGCAATCTCTTTGAGAGCAAAAC
CGAC

Coding sequence (CDS) from alignment at scaffold_7:856567..858920+

>mRNA_3177 ID=mRNA_3177|Name=jgi.p|Nanoce1779_2|584840|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_7:856567..858920+ (Nannochloropsis oceanica)
ATGCGCTTTGCCAGTCTTGCATCTGCCGCCGCCGCAACCGCTGCCAGCAG
CAGCCGCCTGCCCATGAACCCTCTCGTCGCAGTGGGGCAACTCACCTCCA
CGGAAGACCGAGACCAGAACATCCGACGCTGTAGAGACCTAGCTGTTCGC
GCAAAAAAAGCGGGGGCCGCCTTGCTCTGCTTGCCGGAATGCTTCTCACT
TGTAGGCTCCTCCTGGCGAGAAACTGTCGCGGCGGGACAGCCCATTGAAG
GACCCATGGTGAGTGAAATGCGTACTTTGGCCAAGGAGCAAGGTCTGTGG
CTTTCTCTCGGAGGGTTTCCTGAGAAGATGCCATCACCTCAGAATTCGAA
AATAGAAGACAGCGGGGATGAGAACGAGAGAGTGTATAACACCCACATTG
TCCTCGACGACAAAGGAGATATCAAAGCACTCTACCGTAAAATCCACCTG
TTTGACGTCAACTTTCCAAATGGCCCAGTGTTGCAAGAAAGCAAATATAC
TGCTCCCGGCGCCGAGGTGGTAGTCATTGATTCCCCCATCGGCCGACTGG
GTCTCTCCACCTGCTACGACCTCCGTTTTCCCGAATTGTACCAGGCATTG
GTCAAAAGAGGCGCAGAGGTCCTTCTTGTCCCATCAGCATTTACAGTCTT
GACAGGACAAGCCCATTGGGAGATCTTACTTCGGGCCAGAGCTATTGAAA
CGCAATGCTACGTCTTGGCGTCCGCACAAGCAGGACAGCACAACGAAAAA
CGGGCGTCGTACGGGCACTCTTTAATAGTAGACCCGTGGGGGAAAGTGAT
GGAAGATGCGGGGGGTGACGCATCACCGGCACTGGTGATGGCGGAGATTG
ATTTAAAGAGACTACATGAGATAAGGGCAAAGATTCCCGTACAGTTGCAT
CGACGGCGGGATGTGTTTTTCGGGGTAAGCGGTGTTGGTCATAGTAAAGG
AGGAGGAGGAGAAGGAGGAGGAGGAATTGGGACTGCGCCATCGGTGTGA

Synonyms

Publications