jgi.p|Nanoce1779_2|584816, mRNA_3171 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584816
Unique Name	mRNA_3171
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1335
Alignment location	scaffold_7:845665..847292 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584902
Track	FilteredModels2
ProteinId	584816

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:845665..847292 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584816	gene_3171	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584816	mRNA_3171-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3171	CDS_3171	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:845665..847292+
coding sequence from alignment at scaffold_7:845665..847292+

mRNA sequence

>mRNA_3171 ID=mRNA_3171|Name=jgi.p|Nanoce1779_2|584816|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
ACAGGGAGACGTCGATGTCTGCCAGTCTAGGTTTGCACGCCGCCCGCCGT
TTGGCGCTGGGCGGGGCGACCAGGATTGCGCTGCGTGGTATGGCCTCAGA
GAAGGAGATTGCCGCTCGCATCAAGTCCACGACGGGCATCAACAAGATCA
CCAAGACGATGAAGATGGTGGCTGCCTCCAAAATGCGCGGTGACGAGGAC
CGTCTCAAGGCAGGGCGTCCCTTCCAGAGGTGGGTGGATGGCTTCACGCC
CAAGCCCGTTCTCCTGGAGGATTTCGCCAAGGATATTGAGAGCTTGCCGC
AATCCAACTTGTTGGTCGTCGTGACCACCGACCGTGGCCTGTGTGGTGGA
GTCAACTCATCTCTGGCCCGTGTGTTGAAGAACATGGTTCCGGCTTTGGA
CAAGGCGAAAAAGGACGTGCAGATGTTCATCATTGGTGACAAGGGGCGTG
CTACGATGGGCCGGCCCCTGGGGGAGTTCATCACGCAGATTAACTCGGAT
TCGGCTACTCCCTACAACTTTTCTCTCGCTGCGGCCTTGGCGCAGGATGT
GAGCCAGATCAAGGCGGATGCTGTGCATGTGGTGTTTAATCGTTTCCGGT
CCGCCATCGCCTATGAAGCGACGGTCAAGACGATGTACCCGCCTGCGGCG
TTGACAGGAGAGCCCTATGTGGAGTACGAGTTTGAGCCTGACACCAAGAC
GGAGGTACTTGACGACATGTACGAGATGGCGATAGCGACGACTCTTTTCA
CCAGCATGTTGGAAAGTGCCGCGGCCGAGCAGAGCTCCCGGATGAATGCC
ATGGAGAACGCTTCGAAGAACGGGGAGGATTTGATCAAGGAGCTGTCGAT
TCAGTATAACAGGGCGCGGCAGTCGAGGATTACCACGGAGCTTGTGGAGA
TCATTTCGGGAGCGTCGGCGCTGGAGGCGGCGCGTTAAGTTGGGGGGGAA
GAAAGGAAAGGGAAAGAAAGGAAAATGGAGGGAGGAGAGGTTTTGTCTAG
TAGAGTTGGAAGAAAAAAGTGGGGGACATGGGATGGGGGTAGTGCTTCGA
AGCACTTTTATTTTTTTATAGACGGGAGGGAAGGAGGAACGGAGGAAGGG
AGGGAGATTCGTTGTCGCGAAGCATCCAGCCTATAGTGCACAGGAGGAGA
GAAAAGGGGACGGACGCGCGTACATGTCTTTAAGGCGACGGATTTAGTAG
GTAGTGGTATCGAAATCGAAAAACAAGGGAGAAGCAAAGACCAGAGAAGA
AGAAAAAGAAATTGAAGTGGTGACGGAGTAGAGATCGAGATGGTGGAGAG
CACTTTGTGAGGTAGCGGTTGCGAGGGAAGGGCAT

protein sequence of jgi.p|Nanoce1779_2|584816

>mRNA_3171-protein ID=mRNA_3171-protein|Name=jgi.p|Nanoce1779_2|584816|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MSASLGLHAARRLALGGATRIALRGMASEKEIAARIKSTTGINKITKTMK
MVAASKMRGDEDRLKAGRPFQRWVDGFTPKPVLLEDFAKDIESLPQSNLL
VVVTTDRGLCGGVNSSLARVLKNMVPALDKAKKDVQMFIIGDKGRATMGR
PLGEFITQINSDSATPYNFSLAAALAQDVSQIKADAVHVVFNRFRSAIAY
EATVKTMYPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTLFTSMLE
SAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGA
SALEAAR*

mRNA from alignment at scaffold_7:845665..847292+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3171 ID=mRNA_3171|Name=jgi.p|Nanoce1779_2|584816|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp|location=Sequence derived from alignment at scaffold_7:845665..847292+ (Nannochloropsis oceanica)
ACAGGGAGACGTCGATGTCTGCCAGTCTAGGTTTGCACGCCGCCCGCCGT
TTGGCGCTGGGCGGGGCGACCAGGTATGTGATCAAAGCAAGAGGAGGGAG
AGGGGAGTGCTCTCGGCCCGTCTGCATTGGTGTGTGAAAGAGATGGTAGC
GTCTTGCGTGTATAGCGTACAATGTATACAAGTAGAGAGAGAAGAGGGAG
AATGTCCTCCTCCTGGTTTTCTGAAGCCTCGGCGTACGCATTTCGCATCC
TCCCTTCCTCCCTCCCTCCTGTCATGTCTTAACCCGCTTTTCTATCTCTA
CCTTCCTCACTCTTCCCGCACAACTCACCTCCATAACCGTCCCTCACTAT
CCTCTTTCAATATAAGGATTGCGCTGCGTGGTATGGCCTCAGAGAAGGAG
ATTGCCGCTCGCATCAAGTCCACGACGGGCATCAACAAGATCACCAAGAC
GATGAAGATGGTGGCTGCCTCCAAAATGCGCGGTGACGAGGACCGTCTCA
AGGCAGGGCGTCCCTTCCAGAGGTGGGTGGATGGCTTCACGCCCAAGCCC
GTTCTCCTGGAGGATTTCGCCAAGGATATTGAGAGCTTGCCGCAATCCAA
CTTGTTGGTCGTCGTGACCACCGACCGTGGCCTGTGTGGTGGAGTCAACT
CATCTCTGGCCCGTGTGTTGAAGAACATGGTTCCGGCTTTGGACAAGGCG
AAAAAGGACGTGCAGATGTTCATCATTGGTGACAAGGGGCGTGCTACGAT
GGGCCGGCCCCTGGGGGAGTTCATCACGCAGATTAACTCGGATTCGGCTA
CTCCCTACAACTTTTCTCTCGCTGCGGCCTTGGCGCAGGATGTGAGCCAG
ATCAAGGCGGATGCTGTGCATGTGGTGTTTAATCGTTTCCGGTCCGCCAT
CGCCTATGAAGCGACGGTCAAGACGATGTACCCGCCTGCGGCGTTGACAG
GAGAGCCCTATGTGGAGTACGAGTTTGAGCCTGACACCAAGACGGAGGTA
CTTGACGACATGTACGAGATGGCGATAGCGACGACTCTTTTCACCAGCAT
GTTGGAAAGTGCCGCGGCCGAGCAGAGCTCCCGGATGAATGCCATGGAGA
ACGCTTCGAAGAACGGGGAGGATTTGATCAAGGAGCTGTCGATTCAGTAT
AACAGGGCGCGGCAGTCGAGGATTACCACGGAGCTTGTGGAGATCATTTC
GGGAGCGTCGGCGCTGGAGGCGGCGCGTTAAGTTGGGGGGGAAGAAAGGA
AAGGGAAAGAAAGGAAAATGGAGGGAGGAGAGGTTTTGTCTAGTAGAGTT
GGAAGAAAAAAGTGGGGGACATGGGATGGGGGTAGTGCTTCGAAGCACTT
TTATTTTTTTATAGACGGGAGGGAAGGAGGAACGGAGGAAGGGAGGGAGA
TTCGTTGTCGCGAAGCATCCAGCCTATAGTGCACAGGAGGAGAGAAAAGG
GGACGGACGCGCGTACATGTCTTTAAGGCGACGGATTTAGTAGGTAGTGG
TATCGAAATCGAAAAACAAGGGAGAAGCAAAGACCAGAGAAGAAGAAAAA
GAAATTGAAGTGGTGACGGAGTAGAGATCGAGATGGTGGAGAGCACTTTG
TGAGGTAGCGGTTGCGAGGGAAGGGCAT

Coding sequence (CDS) from alignment at scaffold_7:845665..847292+

>mRNA_3171 ID=mRNA_3171|Name=jgi.p|Nanoce1779_2|584816|organism=Nannochloropsis oceanica|type=CDS|length=1848bp|location=Sequence derived from alignment at scaffold_7:845665..847292+ (Nannochloropsis oceanica)
ATGTCTGCCAGTCTAGGTTTGCACGCCGCCCGCCGTTTGGCGCTGGGCGG
GGCGACCAGGATTGCGCTGCGTGGTATGGCCTCAGAGAAGGAGATTGCCG
CTCGCATCAAGTCCACGACGGGCATCAACAAGATCACCAAGACGATGAAG
ATGGTGGCTGCCTCCAAAATGCGCGGTGACGAGGACCGTCTCAAGGCAGG
GCGTCCCTTCCAGAGGTGGGTGGATGGCTTCACGCCCAAGCCCGTTCTCC
TGGAGGATTTCGCCAAGGATATTGAGAGCTTGCCGCAATCCAACTTGTTG
GTCGTCGTGACCACCGACCGTGGCCTGTGTGGTGGAGTCAACTCATCTCT
GGCCCGTGTGTTGAAGAACATGGTTCCGGCTTTGGACAAGGCGAAAAAGG
ACGTGCAGATGTTCATCATTGGTGACAAGGGGCGTGCTACGATGGGCCGG
CCCCTGGGGGAGTTCATCACGCAGATTAACTCGGATTCGGCTACTCCCTA
CAACTTTTCTCTCGCTGCGGCCTTGGCGCAGGATGTGAGCCAGATCAAGG
CGGATGCTGTGCATGTGGTGTTTAATCGTTTCCGGTCCGCCATCGCCTAT
GAAGCGACGGTCAAGACGATGTACCCGCCTGCGGCGTTGACAGGAGAGCC
CTATGTGGAGTACGAGTTTGAGCCTGACACCAAGACGGAGGTACTTGACG
ACATGTACGAGATGGCGATAGCGACGACTCTTTTCACCAGCATGTTGGAA
AGTGCCGCGGCCGAGCAGAGCTCCCGGATGAATGCCATGGAGAACGCTTC
GAAGAACGGGGAGGATTTGATCAAGGAGCTGTCGATTCAGTATAACAGGG
CGCGGCAGTCGAGGATTACCACGGAGCTTGTGGAGATCATTTCGGGAGCG
TCGGCGCTGGAGGCGGCGCGTTAAATGTCTGCCAGTCTAGGTTTGCACGC
CGCCCGCCGTTTGGCGCTGGGCGGGGCGACCAGGATTGCGCTGCGTGGTA
TGGCCTCAGAGAAGGAGATTGCCGCTCGCATCAAGTCCACGACGGGCATC
AACAAGATCACCAAGACGATGAAGATGGTGGCTGCCTCCAAAATGCGCGG
TGACGAGGACCGTCTCAAGGCAGGGCGTCCCTTCCAGAGGTGGGTGGATG
GCTTCACGCCCAAGCCCGTTCTCCTGGAGGATTTCGCCAAGGATATTGAG
AGCTTGCCGCAATCCAACTTGTTGGTCGTCGTGACCACCGACCGTGGCCT
GTGTGGTGGAGTCAACTCATCTCTGGCCCGTGTGTTGAAGAACATGGTTC
CGGCTTTGGACAAGGCGAAAAAGGACGTGCAGATGTTCATCATTGGTGAC
AAGGGGCGTGCTACGATGGGCCGGCCCCTGGGGGAGTTCATCACGCAGAT
TAACTCGGATTCGGCTACTCCCTACAACTTTTCTCTCGCTGCGGCCTTGG
CGCAGGATGTGAGCCAGATCAAGGCGGATGCTGTGCATGTGGTGTTTAAT
CGTTTCCGGTCCGCCATCGCCTATGAAGCGACGGTCAAGACGATGTACCC
GCCTGCGGCGTTGACAGGAGAGCCCTATGTGGAGTACGAGTTTGAGCCTG
ACACCAAGACGGAGGTACTTGACGACATGTACGAGATGGCGATAGCGACG
ACTCTTTTCACCAGCATGTTGGAAAGTGCCGCGGCCGAGCAGAGCTCCCG
GATGAATGCCATGGAGAACGCTTCGAAGAACGGGGAGGATTTGATCAAGG
AGCTGTCGATTCAGTATAACAGGGCGCGGCAGTCGAGGATTACCACGGAG
CTTGTGGAGATCATTTCGGGAGCGTCGGCGCTGGAGGCGGCGCGTTAA

Synonyms

Publications