jgi.p|Nanoce1779_2|625238, mRNA_3139 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625238
Unique NamemRNA_3139
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1242
Alignment locationscaffold_7:748801..750312 -

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Properties
Property NameValue
TranscriptId625324
TrackFilteredModels2
ProteinId625238
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:748801..750312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625238gene_3139Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625238mRNA_3139-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3139CDS_3139Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3139 ID=mRNA_3139|Name=jgi.p|Nanoce1779_2|625238|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
GTTGCTTTGGGGCACGTACTTCAGTAAAACCTCCCGTCCCCCCGTCCTTC
ATTGACCACCAGTATTACACCGGCATCAGCCGTCACCAAGACTACCCACA
CGCTGACCACAAGGCCATGGATGTATCCCTCTGTAGTGCGCGCCTGTTGT
GACTGGAGATTAATGAAGCAGCAGGATGGCAAGCTTTAACCGCCGTCACC
CCCTGCTCCACATCGTCTCATATTCTCCCCTTCCCCCCCTCACGTACTAG
CCCATAGAGTTAAGATGGGGGTACACAATCTGTGGCAGCTGCTGTTGCCG
GTGGGGCGTCGAGTTAATGTGGAGTCGTTGGAGCGCAAAACTCTAGCCAT
CGATGTGAGCATTTGGCTGACGCAATTTATCAAGGCCATGAGAGACGACG
AAGGCAAGGTGGTCAAGAACGCTCACATTATTGGTACCTTTCGACGAATT
GTCAAGCTGCTCTTTTATCGCATCCGTCCCATTTTTGTATTTGATGGTGG
GACGCCTGAGATCAAGCGACGCACAGTCATTTCCCGTAAGCGGCGTCGGG
AGGATCAAGAGGTGAGCGTGCGCAAGACAGCCCAGCGCCTCCTCCTCGCC
CAGCTCAAGAAGCAGCACATGCTCACGCGCAAGGGCCCCGTGGCGCACCA
TCAACGGCAGAAAGGGCCAGCAGCTGTAAACGCAGCCGAGAGGACTGCGG
CCGGGATGGTAGCTTTAGATGGGAACGAGGATGAGGATGAAGAGAGAGAA
GAGAGGTACGACGAGGACGTTATGGAGGAGGGAAGAGGTGATGAGAATGT
AGACGTAGGGGTGCTTGCATCCCTGCCTCCGGAACTTCAAAAAGATGTGG
TTGAAAGCGCGAAGCGGCGTCAGCGTATGTTATCCCGGCAGGCCTTTATG
CCCGTTGCCGGTAATCCTGCTTTGTATTCTCAGGCACAGATTGCAAATTT
TCTGAAGAGCTCAAGGTTGAATCAGAAGGTGATGAGTTTGAGGGGTCTGA
ATGGGGAGGGGGAGGAAGGGGAGGGAGGGAGGGTGGGTAGGAAGGGGGGA
GATAGTGGTGATGCACGGGGGGAAGAGCTTGGGTCAAGAAAATCTGTGTT
AATGAAGGATGCGTTCGAAGAAGGAGAAGGAGGGGGGGGGGGGGAGAGGG
AAGGGCAGCAGCAGGAGCATGGCCCAACCTCGTGCCGGGCCACCGCCCCG
ACAGCGGCAAGATGGGATGGGTGGCGGTGGGTTTCTCCCTGA
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protein sequence of jgi.p|Nanoce1779_2|625238

>mRNA_3139-protein ID=mRNA_3139-protein|Name=jgi.p|Nanoce1779_2|625238|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MGVHNLWQLLLPVGRRVNVESLERKTLAIDVSIWLTQFIKAMRDDEGKVV
KNAHIIGTFRRIVKLLFYRIRPIFVFDGGTPEIKRRTVISRKRRREDQEV
SVRKTAQRLLLAQLKKQHMLTRKGPVAHHQRQKGPAAVNAAERTAAGMVA
LDGNEDEDEEREERYDEDVMEEGRGDENVDVGVLASLPPELQKDVVESAK
RRQRMLSRQAFMPVAGNPALYSQAQIANFLKSSRLNQKVMSLRGLNGEGE
EGEGGRVGRKGGDSGDARGEELGSRKSVLMKDAFEEGEGGGGGEREGQQQ
EHGPTSCRATAPTAARWDGWRWVSP*
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mRNA from alignment at scaffold_7:748801..750312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3139 ID=mRNA_3139|Name=jgi.p|Nanoce1779_2|625238|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at scaffold_7:748801..750312- (Nannochloropsis oceanica)
GTTGCTTTGGGGCACGTACTTCAGTAAAACCTCCCGTCCCCCCGTCCTTC
ATTGACCACCAGTATTACACCGGCATCAGCCGTCACCAAGACTACCCACA
CGCTGACCACAAGGCCATGGATGTATCCCTCTGTAGTGCGCGCCTGTTGT
GACTGGAGATTAATGAAGCAGCAGGATGGCAAGCTTTAACCGCCGTCACC
CCCTGCTCCACATCGTCTCATATTCTCCCCTTCCCCCCCTCACGTACTAG
CCCATAGAGTTAAGATGGGGGTACACAATCTGTGGCAGCTGCTGTTGCCG
GTGGGGCGTCGAGTTAATGTGGAGTCGTTGGAGCGCAAAACTCTAGCCAT
CGATGTGAGCATTTGGCTGACGCAATTTATCAAGGCCATGAGAGACGACG
AAGGCAAGGTGGTCAAGAACGCTCACATTATTGGTACCTTTCGACGAATT
GTCAAGCTGCTCTTTTATCGCATCCGTCCCATTTTTGTATTTGATGGTGG
GACGCCTGAGATCAAGCGACGCACAGTCATTTCCCGTAAGCGGCGTCGGG
AGGATCAAGAGGTGAGCGTGCGCAAGACAGCCCAGCGCCTCCTCCTCGCC
CAGCTCAAGAAGCAGCACATGCTCACGCGCAAGGGCCCCGTGGCGCACCA
TCGTGATGATGATAACAATAAGAAAGGCAAAAAAGCAAGGAAGGAGGCGG
CTGCGGGAGCACCGGAAGTGGCGAGGTTTGTCGCGGGTTTTGACCCTGGG
GAACAAGAACGGCAGAAAGGGCCAGCAGCTGTAAACGCAGCCGAGAGGAC
TGCGGCCGGGATGGTAGCTTTAGATGGGAACGAGGATGAGGATGAAGAGA
GAGAAGAGAGGTACGACGAGGACGTTATGGAGGAGGGAAGAGGTGGTGAG
GGAGGAGGGAGGGAAACAGGAGGCAACATCCGCCAAAGGAGCGCCGCTGC
GGCATTCGCTCAAGCTTTGCCCGCTCGGGGAAGCGACGATGAAGAGGATG
ATGACAACGATGACGTGGAATGGGAGGAGGAGGATGAGGCAGGGGATATT
TTACTGGAAGATGAGAATGTAGACGTAGGGGTGCTTGCATCCCTGCCTCC
GGAACTTCAAAAAGATGTGGTTGAAAGCGCGAAGCGGCGTCAGCGTATGT
TATCCCGGCAGGCCTTTATGCCCGTTGCCGGTAATCCTGCTTTGTATTCT
CAGGCACAGATTGCAAATTTTCTGAAGAGCTCAAGGTTGAATCAGAAGGT
GATGAGTTTGAGGGGTCTGAATGGGGAGGGGGAGGAAGGGGAGGGAGGGA
GGGTGGGTAGGAAGGGGGGAGATAGTGGTGATGCACGGGGGGAAGAGCTT
GGGTCAAGAAAATCTGTGTTAATGAAGGATGCGTTCGAAGAAGGAGAAGG
AGGGGGGGGGGGGGAGAGGGAAGGGCAGCAGCAGGAGCATGGCCCAACCT
CGTGCCGGGCCACCGCCCCGACAGCGGCAAGATGGGATGGGTGGCGGTGG
GTTTCTCCCTGA
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Coding sequence (CDS) from alignment at scaffold_7:748801..750312-

>mRNA_3139 ID=mRNA_3139|Name=jgi.p|Nanoce1779_2|625238|organism=Nannochloropsis oceanica|type=CDS|length=2934bp|location=Sequence derived from alignment at scaffold_7:748801..750312- (Nannochloropsis oceanica)
ATGAGAATGTAGACGTAGGGGTGCTTGCATCCCTGCCTCCGGAACTTCAA
AAAGATGTGGTTGAAAGCGCGAAGCGGCGTCAGCGTATGTTATCCCGGCA
GGCCTTTATGCCCGTTGCCGGTAATCCTGCTTTGTATTCTCAGGCACAGA
TTGCAAATTTTCTGAAGAGCTCAAGGTTGAATCAGAAGGTGATGAGTTTG
AGGGGTCTGAATGGGGAGGGGGAGGAAGGGGAGGGAGGGAGGGTGGGTAG
GAAGGGGGGAGATAGTGGTGATGCACGGGGGGAAGAGCTTGGGTCAAGAA
AATCTGTGTTAATGAAGGATGCGTTCGAAGAAGGAGAAGGAGGGGGGGGG
GGGGAGAGGGAAGGGCAGCAGCAGGAGCATGGCCCAACCTCGTGCCGGGC
CACCGCCCCGACAGCGGCAAGATGGGATGGGTGGCGGTGGGTTTCTCCCT
GAAACGGCAGAAAGGGCCAGCAGCTGTAAACGCAGCCGAGAGGACTGCGG
CCGGGATGGTAGCTTTAGATGGGAACGAGGATGAGGATGAAGAGAGAGAA
GAGAGGTACGACGAGGACGTTATGGAGGAGGGAAGAGGTGATGGGGGTAC
ACAATCTGTGGCAGCTGCTGTTGCCGGTGGGGCGTCGAGTTAATGTGGAG
TCGTTGGAGCGCAAAACTCTAGCCATCGATGTGAGCATTTGGCTGACGCA
ATTTATCAAGGCCATGAGAGACGACGAAGGCAAGGTGGTCAAGAACGCTC
ACATTATTGGTACCTTTCGACGAATTGTCAAGCTGCTCTTTTATCGCATC
CGTCCCATTTTTGTATTTGATGGTGGGACGCCTGAGATCAAGCGACGCAC
AGTCATTTCCCGTAAGCGGCGTCGGGAGGATCAAGAGGTGAGCGTGCGCA
AGACAGCCCAGCGCCTCCTCCTCGCCCAGCTCAAGAAGCAGCACATGCTC
ACGCGCAAGGGCCCCGTGGCGCACCATCATGAGAATGTAGACGTAGGGGT
GCTTGCATCCCTGCCTCCGGAACTTCAAAAAGATGTGGTTGAAAGCGCGA
AGCGGCGTCAGCGTATGTTATCCCGGCAGGCCTTTATGCCCGTTGCCGGT
AATCCTGCTTTGTATTCTCAGGCACAGATTGCAAATTTTCTGAAGAGCTC
AAGGTTGAATCAGAAGGTGATGAGTTTGAGGGGTCTGAATGGGGAGGGGG
AGGAAGGGGAGGGAGGGAGGGTGGGTAGGAAGGGGGGAGATAGTGGTGAT
GCACGGGGGGAAGAGCTTGGGTCAAGAAAATCTGTGTTAATGAAGGATGC
GTTCGAAGAAGGAGAAGGAGGGGGGGGGGGGGAGAGGGAAGGGCAGCAGC
AGGAGCATGGCCCAACCTCGTGCCGGGCCACCGCCCCGACAGCGGCAAGA
TGGGATGGGTGGCGGTGGGTTTCTCCCTGAAACGGCAGAAAGGGCCAGCA
GCTGTAAACGCAGCCGAGAGGACTGCGGCCGGGATGGTAGCTTTAGATGG
GAACGAGGATGAGGATGAAGAGAGAGAAGAGAGGTACGACGAGGACGTTA
TGGAGGAGGGAAGAGGTGATGGGGGTACACAATCTGTGGCAGCTGCTGTT
GCCGGTGGGGCGTCGAGTTAATGTGGAGTCGTTGGAGCGCAAAACTCTAG
CCATCGATGTGAGCATTTGGCTGACGCAATTTATCAAGGCCATGAGAGAC
GACGAAGGCAAGGTGGTCAAGAACGCTCACATTATTGGTACCTTTCGACG
AATTGTCAAGCTGCTCTTTTATCGCATCCGTCCCATTTTTGTATTTGATG
GTGGGACGCCTGAGATCAAGCGACGCACAGTCATTTCCCGTAAGCGGCGT
CGGGAGGATCAAGAGGTGAGCGTGCGCAAGACAGCCCAGCGCCTCCTCCT
CGCCCAGCTCAAGAAGCAGCACATGCTCACGCGCAAGGGCCCCGTGGCGC
ACCATCATGAGAATGTAGACGTAGGGGTGCTTGCATCCCTGCCTCCGGAA
CTTCAAAAAGATGTGGTTGAAAGCGCGAAGCGGCGTCAGCGTATGTTATC
CCGGCAGGCCTTTATGCCCGTTGCCGGTAATCCTGCTTTGTATTCTCAGG
CACAGATTGCAAATTTTCTGAAGAGCTCAAGGTTGAATCAGAAGGTGATG
AGTTTGAGGGGTCTGAATGGGGAGGGGGAGGAAGGGGAGGGAGGGAGGGT
GGGTAGGAAGGGGGGAGATAGTGGTGATGCACGGGGGGAAGAGCTTGGGT
CAAGAAAATCTGTGTTAATGAAGGATGCGTTCGAAGAAGGAGAAGGAGGG
GGGGGGGGGGAGAGGGAAGGGCAGCAGCAGGAGCATGGCCCAACCTCGTG
CCGGGCCACCGCCCCGACAGCGGCAAGATGGGATGGGTGGCGGTGGGTTT
CTCCCTGAAACGGCAGAAAGGGCCAGCAGCTGTAAACGCAGCCGAGAGGA
CTGCGGCCGGGATGGTAGCTTTAGATGGGAACGAGGATGAGGATGAAGAG
AGAGAAGAGAGGTACGACGAGGACGTTATGGAGGAGGGAAGAGGTGATGG
GGGTACACAATCTGTGGCAGCTGCTGTTGCCGGTGGGGCGTCGAGTTAAT
GTGGAGTCGTTGGAGCGCAAAACTCTAGCCATCGATGTGAGCATTTGGCT
GACGCAATTTATCAAGGCCATGAGAGACGACGAAGGCAAGGTGGTCAAGA
ACGCTCACATTATTGGTACCTTTCGACGAATTGTCAAGCTGCTCTTTTAT
CGCATCCGTCCCATTTTTGTATTTGATGGTGGGACGCCTGAGATCAAGCG
ACGCACAGTCATTTCCCGTAAGCGGCGTCGGGAGGATCAAGAGGTGAGCG
TGCGCAAGACAGCCCAGCGCCTCCTCCTCGCCCAGCTCAAGAAGCAGCAC
ATGCTCACGCGCAAGGGCCCCGTGGCGCACCATC
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Synonyms
Publications