jgi.p|Nanoce1779_2|625238, gene_3139 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625238
Unique Namegene_3139
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:748801..750312 -

Link to JBrowse

Properties
Property NameValue
TranscriptId625324
ProteinId625238
Product nameputative DNA repair protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:748801..750312 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003697single-stranded DNA binding
GO:0004519endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625238mRNA_3139-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625238mRNA_3139Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|625238

>mRNA_3139-protein ID=mRNA_3139-protein|Name=jgi.p|Nanoce1779_2|625238|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MGVHNLWQLLLPVGRRVNVESLERKTLAIDVSIWLTQFIKAMRDDEGKVV
KNAHIIGTFRRIVKLLFYRIRPIFVFDGGTPEIKRRTVISRKRRREDQEV
SVRKTAQRLLLAQLKKQHMLTRKGPVAHHQRQKGPAAVNAAERTAAGMVA
LDGNEDEDEEREERYDEDVMEEGRGDENVDVGVLASLPPELQKDVVESAK
RRQRMLSRQAFMPVAGNPALYSQAQIANFLKSSRLNQKVMSLRGLNGEGE
EGEGGRVGRKGGDSGDARGEELGSRKSVLMKDAFEEGEGGGGGEREGQQQ
EHGPTSCRATAPTAARWDGWRWVSP*
back to top
Synonyms
Publications