jgi.p|Nanoce1779_2|583929, mRNA_2949 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583929
Unique Name	mRNA_2949
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1677
Alignment location	scaffold_7:325590..327266 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584015
Track	FilteredModels2
ProteinId	583929

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:325590..327266 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583929	gene_2949	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583929	mRNA_2949-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2949	CDS_2949	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:325590..327266+
coding sequence from alignment at scaffold_7:325590..327266+

mRNA sequence

>mRNA_2949 ID=mRNA_2949|Name=jgi.p|Nanoce1779_2|583929|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp
ATGAAACCAAGGCAACAAACTGACCAAGGACAAGGTTGTCTTGGTTTCAT
CATCATCATCATCATCATTATCATCGTAATCATCTGCTGTTATTGACTTT
CATCCTGCCGAGAGCGTAGCCCTTTTCTCTTTACGTCTGTGATCCTCAAA
GGATGAAAGCTACGACATATTCATGTCCCGCTCTATCTCCACCTGTGCCG
ACCCTTCACTCATTCCTCTTTATCTTTCCCACGTACCTACTACCTGACCC
CACATCCCAGCGCTCTGTTCCATCGCTTACACTATGACAAGGCCAAGACC
ACCATCGTCACCTCCACTTTTTCTCCCTCTCGCGTTCCTCCTACTTCTTC
CTTCTGAAACTTCCAGCTTCCTCCTTCACTCCCGAATTCCATCGCTGTCG
TCGCGTGCCTGCCGCCTATCCTCCCCATACTCGACCGCCTCACCCGTTCA
CTGCCTGCACGCCAGCACCCTCAACGAACAACGACACGAAGAAGACGAAG
AAGAAGAAGTTTCCACCACCGGCTCCGGTAATCCTTCCACTACCTATATC
GTCTCCCGCCCCGACAACTCACAAGACCTCCGTACTTTCCTTGTCCCCCC
CTCCGTGCTCGTCTCTCTCCCCCTCCCCAACGCCGTGTACATCTACGGCA
ACTTTAGCAGCATGTCCAAAGCCCGCAAACTTATCCGCAAAGGTCAAGTC
CTCATCAATGATAGTAACGGAAATACTTGCGAGGGCACTGTCCGCGGCGG
TGACGTCATCACAATAGTACCCCCTGAGGCGCCCAAGGAAAAGAAAGGAA
AAGGAGGGAAAGATGGAGGTCAGGGAAGGGGTATCAAGAAAGTGACAGTT
CTCTACGAAGATAATGACCTTGCAGTCATTGTCAAGCCTGCTGGTGTGGC
TGTGCATGGCACGGGCTCTTATTCACTAGTAGAGGAATATGCGAATTTTT
TGACTCCCACAACAAGAGGGGAGGAGGAGGCGCTAGACAAGCCGATGCAT
GCACACCGGCTCGACGCTCCTGTGGGAGGGCTGTTGGTAATCGCAAAAAC
AAAGACAGCACTACAAGGTCTACTATCAGCATTTTTGGAACGAAAAGTGA
AGAAGACATATCAAACGATAGTCATTGGTCGGCCTAGTCCTGAGTCGGGA
GATATTACAACAGAAGTAGAGGAAAAGGAGGCATTCACGCATTTCAAGGT
CCTCGAGACCGTCCCCTCCCTCACCTTCGGCTGTCTTTCTCTACTGGAAC
TATCGCCCGAGACAGGACGCAAGCATCAATTGAGACGGCATTGCCTCGAT
CTAAATACACCTATATTGGGTGATATCCGCTACGGCCCCCAAAACACCTT
GAGGACAAGAGGACTCTTCCTCTGGAGCGTCGGTGTAAGTTTTACCCACC
CTGTGACGGGGAAGAATGAGGCGTTCGAGGTGGGCTTGCCTGAGATCTTC
GGGAATACTATGAACATGGAGAGGAGGAAGGCGGAGACACAGCTGGTTCA
GGAGAAAGGGAAGGGGGACAAAGTGGAGGTGGATGATAAGGGCAAGGATT
AAAGTAGACCAAGTAAATAGAACAAATACAACAAATAGGCATGGCGGCAG
TCCAAATTGGCGCGAAAGCACCCGCGCACATGTGAAATAACAAGAGCAAG
AAAGAAACGAGAAAACCTTCGTCAATG

protein sequence of jgi.p|Nanoce1779_2|583929

>mRNA_2949-protein ID=mRNA_2949-protein|Name=jgi.p|Nanoce1779_2|583929|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MTRPRPPSSPPLFLPLAFLLLLPSETSSFLLHSRIPSLSSRACRLSSPYS
TASPVHCLHASTLNEQRHEEDEEEEVSTTGSGNPSTTYIVSRPDNSQDLR
TFLVPPSVLVSLPLPNAVYIYGNFSSMSKARKLIRKGQVLINDSNGNTCE
GTVRGGDVITIVPPEAPKEKKGKGGKDGGQGRGIKKVTVLYEDNDLAVIV
KPAGVAVHGTGSYSLVEEYANFLTPTTRGEEEALDKPMHAHRLDAPVGGL
LVIAKTKTALQGLLSAFLERKVKKTYQTIVIGRPSPESGDITTEVEEKEA
FTHFKVLETVPSLTFGCLSLLELSPETGRKHQLRRHCLDLNTPILGDIRY
GPQNTLRTRGLFLWSVGVSFTHPVTGKNEAFEVGLPEIFGNTMNMERRKA
ETQLVQEKGKGDKVEVDDKGKD*

mRNA from alignment at scaffold_7:325590..327266+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2949 ID=mRNA_2949|Name=jgi.p|Nanoce1779_2|583929|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp|location=Sequence derived from alignment at scaffold_7:325590..327266+ (Nannochloropsis oceanica)
ATGAAACCAAGGCAACAAACTGACCAAGGACAAGGTTGTCTTGGTTTCAT
CATCATCATCATCATCATTATCATCGTAATCATCTGCTGTTATTGACTTT
CATCCTGCCGAGAGCGTAGCCCTTTTCTCTTTACGTCTGTGATCCTCAAA
GGATGAAAGCTACGACATATTCATGTCCCGCTCTATCTCCACCTGTGCCG
ACCCTTCACTCATTCCTCTTTATCTTTCCCACGTACCTACTACCTGACCC
CACATCCCAGCGCTCTGTTCCATCGCTTACACTATGACAAGGCCAAGACC
ACCATCGTCACCTCCACTTTTTCTCCCTCTCGCGTTCCTCCTACTTCTTC
CTTCTGAAACTTCCAGCTTCCTCCTTCACTCCCGAATTCCATCGCTGTCG
TCGCGTGCCTGCCGCCTATCCTCCCCATACTCGACCGCCTCACCCGTTCA
CTGCCTGCACGCCAGCACCCTCAACGAACAACGACACGAAGAAGACGAAG
AAGAAGAAGTTTCCACCACCGGCTCCGGTAATCCTTCCACTACCTATATC
GTCTCCCGCCCCGACAACTCACAAGACCTCCGTACTTTCCTTGTCCCCCC
CTCCGTGCTCGTCTCTCTCCCCCTCCCCAACGCCGTGTACATCTACGGCA
ACTTTAGCAGCATGTCCAAAGCCCGCAAACTTATCCGCAAAGGTCAAGTC
CTCATCAATGATAGTAACGGAAATACTTGCGAGGGCACTGTCCGCGGCGG
TGACGTCATCACAATAGTACCCCCTGAGGCGCCCAAGGAAAAGAAAGGAA
AAGGAGGGAAAGATGGAGGTCAGGGAAGGGGTATCAAGAAAGTGACAGTT
CTCTACGAAGATAATGACCTTGCAGTCATTGTCAAGCCTGCTGGTGTGGC
TGTGCATGGCACGGGCTCTTATTCACTAGTAGAGGAATATGCGAATTTTT
TGACTCCCACAACAAGAGGGGAGGAGGAGGCGCTAGACAAGCCGATGCAT
GCACACCGGCTCGACGCTCCTGTGGGAGGGCTGTTGGTAATCGCAAAAAC
AAAGACAGCACTACAAGGTCTACTATCAGCATTTTTGGAACGAAAAGTGA
AGAAGACATATCAAACGATAGTCATTGGTCGGCCTAGTCCTGAGTCGGGA
GATATTACAACAGAAGTAGAGGAAAAGGAGGCATTCACGCATTTCAAGGT
CCTCGAGACCGTCCCCTCCCTCACCTTCGGCTGTCTTTCTCTACTGGAAC
TATCGCCCGAGACAGGACGCAAGCATCAATTGAGACGGCATTGCCTCGAT
CTAAATACACCTATATTGGGTGATATCCGCTACGGCCCCCAAAACACCTT
GAGGACAAGAGGACTCTTCCTCTGGAGCGTCGGTGTAAGTTTTACCCACC
CTGTGACGGGGAAGAATGAGGCGTTCGAGGTGGGCTTGCCTGAGATCTTC
GGGAATACTATGAACATGGAGAGGAGGAAGGCGGAGACACAGCTGGTTCA
GGAGAAAGGGAAGGGGGACAAAGTGGAGGTGGATGATAAGGGCAAGGATT
AAAGTAGACCAAGTAAATAGAACAAATACAACAAATAGGCATGGCGGCAG
TCCAAATTGGCGCGAAAGCACCCGCGCACATGTGAAATAACAAGAGCAAG
AAAGAAACGAGAAAACCTTCGTCAATG

Coding sequence (CDS) from alignment at scaffold_7:325590..327266+

>mRNA_2949 ID=mRNA_2949|Name=jgi.p|Nanoce1779_2|583929|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_7:325590..327266+ (Nannochloropsis oceanica)
ATGACAAGGCCAAGACCACCATCGTCACCTCCACTTTTTCTCCCTCTCGC
GTTCCTCCTACTTCTTCCTTCTGAAACTTCCAGCTTCCTCCTTCACTCCC
GAATTCCATCGCTGTCGTCGCGTGCCTGCCGCCTATCCTCCCCATACTCG
ACCGCCTCACCCGTTCACTGCCTGCACGCCAGCACCCTCAACGAACAACG
ACACGAAGAAGACGAAGAAGAAGAAGTTTCCACCACCGGCTCCGGTAATC
CTTCCACTACCTATATCGTCTCCCGCCCCGACAACTCACAAGACCTCCGT
ACTTTCCTTGTCCCCCCCTCCGTGCTCGTCTCTCTCCCCCTCCCCAACGC
CGTGTACATCTACGGCAACTTTAGCAGCATGTCCAAAGCCCGCAAACTTA
TCCGCAAAGGTCAAGTCCTCATCAATGATAGTAACGGAAATACTTGCGAG
GGCACTGTCCGCGGCGGTGACGTCATCACAATAGTACCCCCTGAGGCGCC
CAAGGAAAAGAAAGGAAAAGGAGGGAAAGATGGAGGTCAGGGAAGGGGTA
TCAAGAAAGTGACAGTTCTCTACGAAGATAATGACCTTGCAGTCATTGTC
AAGCCTGCTGGTGTGGCTGTGCATGGCACGGGCTCTTATTCACTAGTAGA
GGAATATGCGAATTTTTTGACTCCCACAACAAGAGGGGAGGAGGAGGCGC
TAGACAAGCCGATGCATGCACACCGGCTCGACGCTCCTGTGGGAGGGCTG
TTGGTAATCGCAAAAACAAAGACAGCACTACAAGGTCTACTATCAGCATT
TTTGGAACGAAAAGTGAAGAAGACATATCAAACGATAGTCATTGGTCGGC
CTAGTCCTGAGTCGGGAGATATTACAACAGAAGTAGAGGAAAAGGAGGCA
TTCACGCATTTCAAGGTCCTCGAGACCGTCCCCTCCCTCACCTTCGGCTG
TCTTTCTCTACTGGAACTATCGCCCGAGACAGGACGCAAGCATCAATTGA
GACGGCATTGCCTCGATCTAAATACACCTATATTGGGTGATATCCGCTAC
GGCCCCCAAAACACCTTGAGGACAAGAGGACTCTTCCTCTGGAGCGTCGG
TGTAAGTTTTACCCACCCTGTGACGGGGAAGAATGAGGCGTTCGAGGTGG
GCTTGCCTGAGATCTTCGGGAATACTATGAACATGGAGAGGAGGAAGGCG
GAGACACAGCTGGTTCAGGAGAAAGGGAAGGGGGACAAAGTGGAGGTGGA
TGATAAGGGCAAGGATTAA

Synonyms

Publications