jgi.p|Nanoce1779_2|583929, gene_2949 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583929
Unique Namegene_2949
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:325590..327266 +

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Properties
Property NameValue
TranscriptId584015
ProteinId583929
Product namePseudouridine synthase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:325590..327266 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0042299lupeol synthase activity
GO:0042300beta-amyrin synthase activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01610NO05G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583929mRNA_2949-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583929mRNA_2949Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|583929

>mRNA_2949-protein ID=mRNA_2949-protein|Name=jgi.p|Nanoce1779_2|583929|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MTRPRPPSSPPLFLPLAFLLLLPSETSSFLLHSRIPSLSSRACRLSSPYS
TASPVHCLHASTLNEQRHEEDEEEEVSTTGSGNPSTTYIVSRPDNSQDLR
TFLVPPSVLVSLPLPNAVYIYGNFSSMSKARKLIRKGQVLINDSNGNTCE
GTVRGGDVITIVPPEAPKEKKGKGGKDGGQGRGIKKVTVLYEDNDLAVIV
KPAGVAVHGTGSYSLVEEYANFLTPTTRGEEEALDKPMHAHRLDAPVGGL
LVIAKTKTALQGLLSAFLERKVKKTYQTIVIGRPSPESGDITTEVEEKEA
FTHFKVLETVPSLTFGCLSLLELSPETGRKHQLRRHCLDLNTPILGDIRY
GPQNTLRTRGLFLWSVGVSFTHPVTGKNEAFEVGLPEIFGNTMNMERRKA
ETQLVQEKGKGDKVEVDDKGKD*
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Synonyms
Publications