jgi.p|Nanoce1779_2|553396, mRNA_2942 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553396
Unique Name	mRNA_2942
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	4880
Alignment location	scaffold_7:308793..313855 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	553482
Track	FilteredModels2
ProteinId	553396

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:308793..313855 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553396	gene_2942	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553396	mRNA_2942-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2942	CDS_2942	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:308793..313855-
coding sequence from alignment at scaffold_7:308793..313855-

mRNA sequence

>mRNA_2942 ID=mRNA_2942|Name=jgi.p|Nanoce1779_2|553396|organism=Nannochloropsis oceanica|type=mRNA|length=4880bp
GTCATATCCAGCCCGCTTACAGCCGCAGACCACGACACGAGCGGGTTTCG
ACCTCTACTCTTCCCAAAATCTAAGCCTTCCCCATGCCATGACTTTACAT
GCAAAGCGCACAGAGGGGTTCATATCTGGATACAATGGGGAATTGTCGTC
GTCCTATCTCCAGTTGTAGCTAGCCGGGGGACGCCTTTTGTATCCCGACC
GAGCATTATCATCGCCCAGGCCTGGCTACCTCCCCCTTGTGTCCATATTA
CCATCTAGCTACACAATGCTGCGTCGGCCGCGACAAGTTCTGCTGCTACT
GCCCCGGGAGCAATGGAAAACTGAGCAAAAAAAGAGCCTGTGTAGCCATG
TCGCCTGTCGCACCTCCACTTATACTCAACCAAGCCGCCCAAGGTTTCTC
GCCTCGGGCCTTGTACACACCAAAGCCCCCTCCTCCTCCTCACTAGCGAA
TGCACCACCACGACCGCCCCGAGGCCCCGATACAGACGCCTATAAATGGA
TGGAAGAGCCTGGCAGCACACAAATGCTGGCTCATTTGGACGCTGAGAAT
CGTTACTCGTACAAAGCCATGCAGTCCACGCATGGCCTCCAAGCAACCCT
CTTCAGGGAAATATATACCTATTTTCGCCCTACCTCCGAAGAAATAGAAG
CAGAAAGTGGAAAAGAAACTACCTCGCACTTGGCTGAGGCGGGAGGTGAT
GGGTACATGTATTATTCCCGGCGGCCGCGTGGGTGCAATTATCCCATCTA
CTATCGGCGTCCTCAACAATCTGCTGCTGTTGCTGCTGTTGACAGTGGCG
CAGAGGATGCTTCAGACACTTCTTCATCAACATCTGAATACAAAGAAGAG
GCTGAAACAATTCTGTTAAATCAAAATGCCATGCCTGACTTCTACCAACG
CCAACACCTTGTAGACCTTAAAGTGAGCCCTCCGAGCGACCGAGGGATGG
AGGGAAGGAGCAGTTTAGTGGCCTTCACACTGGCCGCCCCTGAGGCAATG
GAGCAAGGCACAACATTGTACATCCGAATTTTCGATAACAATTCATCATC
TTCATCCTCGTCCACTGCTTCGCCCTCGTCCTCGTGGTGGACCGCCGACA
GGGGGATATGGGAAGGAATTGGCAGCTTCGAATGGGGTCATTTATCCTCT
GCAGACAAGTTCAAGATTCGAGGCACCGGCACCAGCACCAGCACCAGTAC
CAACATCAGCACCAGTACCAGCAACACAAACTTCTCTAGTCTGCCCAAGC
GAAATGATGAAGACACAAACGAAATTAGCAAATCAACCCCAACGCGCGTG
CTTTACTATACCAAAGTAAACCATCATGGCCGTCCCCACCAATTGTGGAT
GGTCAGACTTGAACTCAATGGCAAGGGCCTACACGACGCTCCTCGGCTAC
TGTATTCCATACCAGAAGAAGACGAGGCTTCTTTCCTCTCCCTTGGTACG
ACTAAAGACAAGAAATTTGTCACGTGCTCGGCGAATTCTAAAACTACGTC
GGAGGTGCAATTGCTGCCTGGTCCGGGGTCGAAGGAGGAAAGGAGGAAGG
GAGGGAGGGAAAAGGAATGTGAGCCTCTTTTGTTTCGGAAGAAGAAGGCC
GGGATACAATATTTTGTGGATCATGGGGGGGGGCTCTTCTGGGTGGTGAC
GAATGAGAAAGAGAAACAAATCAGAGACAATATTAACAGTAGCACCGGTA
GCATTGATGACATGGACCTTTTCCACGACCACTGCGTTTTGTACGAACGC
CTGCATGGCACACCAAGCCTCCGCGTGATTGCACGCCGTCCCTCCTCCTC
TTCTTTCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTC
AACCCCCTACTACCTCTTCTCCATTTCACCGACCCATTCTTCCCCGTGAA
GTCGAAACCGGACGACTTCAACCAGGCCTCAATCAAGACTATTTTGCTGA
CGCTGTTCGTTTCTCGCTCACCTCTCCCATACTCCCGGATGTCACATATG
AATATAATATGAAGGAGCGTCAATTAATCGAGCTTCATCGAGAGACCTTA
CGGGCACGTCCACCGATTAAGCAGCACCAGCAGCGGGACTACGAATGCCA
GCGGCATTGGGTGCAAAGTAGACACGGTGAGGTCCAAATTCCGCTTACAC
TAGCCTACAAATGTGGTTTGCCATGCCCTGCTCCTGTACTCTTGATTGCC
TATGGGGCGTATGGTGTGTCGCTTGATCTGAGTTTTAGACCCGAAATCCT
TCCTTTATTGGACCGCTGCTGGGTGATTGCTTACGCTCACGTACGAGGTG
GAGGGGAGCTGGGTCGACGCTGGCATGCTCAGGGAAAAGGCGCGAAGAAA
ATAAATTCTATCCAGGACTATTTGTCGTGTGTTGAATGGTTACTCGAGAG
GGGCTGGACACGGCCCGGCTTGCTAGTAGGACAGGGGGCGAGCGCAGGAG
CGCTGGTGGTGGCGGGGGGGATTCATCGTTGTCCGGAGGTTTTTGGGGGA
ATGGTTTTAAAAGTGCCGTTTTTAGATCTAGCGCGGACGATGACTGACCC
GAGCTTGGCTCTGACTGTACATGAGTATGATGAATGGACGGAAGGGAGGG
ATCCGAGAAGGGATAGAGACATGGAAGCCCGATTGAGAGAGCTGTCTCCT
TATGATACTCTGGATTTGCTTCTGCCTTCCACAGCAGCAGGAGAAAGGGA
AGGAGGGAAAGGAGGAGGAGGGGGGAAGAAAGCGTTGCCACCTAGTTTAT
TGATTGCGTCCCTGGCGGATCGACGTGTTCATTATTGGGAGGCAGCTAAA
TATGCAGCGAAGGCCCGAGAGATCAGCGAGGGGGAAAGGACTGGTGAGGT
GCTCTTGCGCATGGAAGGAGATCGGGCACATGAATCCCCAATGGCACTGA
CGGACGTGTGCCAAGAGGCGGCATTTGAGGCTGCGTTCATGATCACCAGA
TTGGGGTTAGAGGAGAAGGGTAAGGAAGGGGACAGGGGGGGGGGGGTTGG
AGGAGGGGGAGGGGGAAGGACGACGGCGGGAGGGGTGGCGCCGGGCTGGG
AGGGCTGCGCCACGGCATCTGGGCAAAGTCCCGCCGCTGGTGTTTTGGTA
AAACAAAGTACGCTATAAGAACCTTGTATAGCACTTATTGATGATGCAAA
AAAGGAAGAATATGCACCAGTACAGGATCCCAACTATCAACCTGGCTTTA
TGTTATCTTCAATTCAATACAGATCCGGGCAAGCGTGTAAGCTATTTTTT
TTCCTGTGCCGTTTCGATCTCTCAAAACGGTGCTCGAGCCTCGAATCGAA
TCCGTTCCCCGGAAATGGGATGGTGAAAACTCAAAATCTCAGCGTGCAAA
TGCAGGCGTGCCCCCCTCGTCTCCAACGTACGCTCCTTCACCTCCAACAC
ACACCCTTCCTTCATGCCTTCCTCCTTCCGTCCCTCCACATCCTCTTCCT
CCAACCGATCATCCTCAGTCAAATAGGGTTTCACAAAAGCTCTCATGTCA
CTCTTCGTCCATTTATCACCCATCGAATAAATGCTGTCCCCCAAAATAGG
GTGCCCCAGCGCTGCCATATGCACCCTCAACTGATGCGTCCTTCCCGTCA
GAGGCGTCAGCTCCACACGAGTGATCCTTTCGACAGTACCATCACAACCA
GCAGCAGTACCAACACATACGGTTCGAAAGAGGGTTTTTGATTCTTTCCC
CCTTTCCGGGTCCATGACTTGCTTCGGGCGTGTTTCGCGATCGGAACGAA
TAGGCAAACACACCTCGCCTCTTGGCTGAGGCCAGAGCGGACATCCCTTC
ACCAAAGCCACGTATCGTTTGCCCACCTTTTTTTCACGGAATTGCGCGCT
TAGGCTTCGGGCGGCTTGCATTGTCCGGGCCAGGACTAAGGCTCCCGAGG
TTTCGCAGTCTAGGCGGTGCACTGTTTTGACTTGTTGAAAGACACGGAGT
AACCGGGTTTGTACCGAGTCTTGACGATTTCCCTCTTTGGCTTCGAATGC
CTTGAGTAGCCGCTCGTATATCGTTTCCATGACGTCTGAGGGGGCTTTGA
GAATACGCACGCCCCATTCGACAAAAATGTGACGTTTGCGAGGGACGGAG
GATTTGTGCGCGAGCAGGCTTGCAAGGGTGCGTGCGAGATATGGGTCGGC
GGACAGGTTGAGGGTATGTTGTAGAGTGACTGGGTCTTCGGTGAGCATGT
CCATCCAGAGCTCTTGATGAGTGCGTTTACGTTTGTTGTTTGGTCGTGGT
GGGGAGGGGGAGCTTGGTGAGGTGGCAGGGAATGGAGGTGCCGCTAGGGG
AGGCGATGACGATGTGGTGTCATTGCCTTGAGCGAGAGCTGGTTGCGCCG
ATACAGCGGAATATTGCTTTAGGTCTTCATCGAGAGCTAACAAAGATGGA
AGCATGACCGCGTCTGCAGTGCTACTTTCCAATGGTACTGGCGGTTTCAC
TTCTATCGAAGAAGCCTCGTCCGTGCCCTCTCCCTTGACCAACGTATTGC
CAGGAATGGTACTGAGCCCAACCTGCTTGTTGACAACAATTAGGTGGTCA
TCGACATACAGAAGCGACAGATCGACTTGAGCTCCCAGGGCATCGAGGTC
ATGGATGGTTTTCGGGGTAGAGGCGACATGCATTATTGATGATTGTGGTG
TAAAGGGAGATGGATGAGGGATGGCGGGAGGGGCAGAGTCAGGAGGCCCA
TGTTGGCGGCATCCGATGGATTTGATTTTACGACCTGTGTATGTGGGCTT
TCGTCATTATTGATGCGTGTAGCCCGCGCTCTTCCGACGACAAATGGTGC
GCTGAATGCTCGCAGGCAGCAGGCAGCGACGTCATAAATTGCGCGACATT
TCAAATGCGCGGCAACGCTTGAGCCTGAGC

protein sequence of jgi.p|Nanoce1779_2|553396

>mRNA_2942-protein ID=mRNA_2942-protein|Name=jgi.p|Nanoce1779_2|553396|organism=Nannochloropsis oceanica|type=polypeptide|length=951bp
MLRRPRQVLLLLPREQWKTEQKKSLCSHVACRTSTYTQPSRPRFLASGLV
HTKAPSSSSLANAPPRPPRGPDTDAYKWMEEPGSTQMLAHLDAENRYSYK
AMQSTHGLQATLFREIYTYFRPTSEEIEAESGKETTSHLAEAGGDGYMYY
SRRPRGCNYPIYYRRPQQSAAVAAVDSGAEDASDTSSSTSEYKEEAETIL
LNQNAMPDFYQRQHLVDLKVSPPSDRGMEGRSSLVAFTLAAPEAMEQGTT
LYIRIFDNNSSSSSSSTASPSSSWWTADRGIWEGIGSFEWGHLSSADKFK
IRGTGTSTSTSTNISTSTSNTNFSSLPKRNDEDTNEISKSTPTRVLYYTK
VNHHGRPHQLWMVRLELNGKGLHDAPRLLYSIPEEDEASFLSLGTTKDKK
FVTCSANSKTTSEVQLLPGPGSKEERRKGGREKECEPLLFRKKKAGIQYF
VDHGGGLFWVVTNEKEKQIRDNINSSTGSIDDMDLFHDHCVLYERLHGTP
SLRVIARRPSSSSFSSSSSSSSSSSSSSQPPTTSSPFHRPILPREVETGR
LQPGLNQDYFADAVRFSLTSPILPDVTYEYNMKERQLIELHRETLRARPP
IKQHQQRDYECQRHWVQSRHGEVQIPLTLAYKCGLPCPAPVLLIAYGAYG
VSLDLSFRPEILPLLDRCWVIAYAHVRGGGELGRRWHAQGKGAKKINSIQ
DYLSCVEWLLERGWTRPGLLVGQGASAGALVVAGGIHRCPEVFGGMVLKV
PFLDLARTMTDPSLALTVHEYDEWTEGRDPRRDRDMEARLRELSPYDTLD
LLLPSTAAGEREGGKGGGGGKKALPPSLLIASLADRRVHYWEAAKYAAKA
REISEGERTGEVLLRMEGDRAHESPMALTDVCQEAAFEAAFMITRLGLEE
KGKEGDRGGGVGGGGGGRTTAGGVAPGWEGCATASGQSPAAGVLVKQSTL
*

mRNA from alignment at scaffold_7:308793..313855-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2942 ID=mRNA_2942|Name=jgi.p|Nanoce1779_2|553396|organism=Nannochloropsis oceanica|type=mRNA|length=5063bp|location=Sequence derived from alignment at scaffold_7:308793..313855- (Nannochloropsis oceanica)
GTCATATCCAGCCCGCTTACAGCCGCAGACCACGACACGAGCGGGTTTCG
ACCTCTACTCTTCCCAAAATCTAAGCCTTCCCCATGCCATGACTTTACAT
GCAAAGCGCACAGAGGGGTTCATATCTGGATACAATGGGGAATTGTCGTC
GTCCTATCTCCAGTTGTAGCTAGCCGGGGGACGCCTTTTGTATCCCGACC
GAGCATTATCATCGCCCAGGCCTGGCTACCTCCCCCTTGTGTCCATATTA
CCATCTAGCTACACAATGCTGCGTCGGCCGCGACAAGTTCTGCTGCTACT
GCCCCGGGAGCAATGGAAAACTGAGCAAAAAAAGAGCCTGTGTAGCCATG
TCGCCTGTCGCACCTCCACTTATACTCAACCAAGCCGCCCAAGGTTTCTC
GCCTCGGGCCTTGTACACACCAAAGCCCCCTCCTCCTCCTCACTAGCGAA
TGCACCACCACGACCGCCCCGAGGCCCCGATACAGACGCCTATAAATGGA
TGGAAGAGCCTGGCAGCACACAAATGCTGGCTCATTTGGACGCTGAGAAT
CGTTACTCGTACAAAGCCATGCAGTCCACGCATGGCCTCCAAGCAACCCT
CTTCAGGGAAATATATACCTATTTTCGCCCTACCTCCGAAGAAATAGAAG
CAGAAAGTGGAAAAGAAACTACCTCGCACTTGGCTGAGGCGGGAGGTGAT
GGGTACATGTATTATTCCCGGCGGCCGCGTGGGTGCAATTATCCCATCTA
CTATCGGCGTCCTCAACAATCTGCTGCTGTTGCTGCTGTTGACAGTGGCG
CAGAGGATGCTTCAGACACTTCTTCATCAACATCTGAATACAAAGAAGAG
GCTGAAACAATTCTGTTAAATCAAAATGCCATGCCTGACTTCTACCAACG
CCAACACCTTGTAGACCTTAAAGTGAGCCCTCCGAGCGACCGAGGGATGG
AGGGAAGGAGCAGTTTAGTGGCCTTCACACTGGCCGCCCCTGAGGCAATG
GAGCAAGGCACAACATTGTACATCCGAATTTTCGATAACAATTCATCATC
TTCATCCTCGTCCACTGCTTCGCCCTCGTCCTCGTGGTGGACCGCCGACA
GGGGGATATGGGAAGGAATTGGCAGCTTCGAATGGGGTCATTTATCCTCT
GCAGACAAGTTCAAGATTCGAGGCACCGGCACCAGCACCAGCACCAGTAC
CAACATCAGCACCAGTACCAGCAACACAAACTTCTCTAGTCTGCCCAAGC
GAAATGATGAAGACACAAACGAAATTAGCAAATCAACCCCAACGCGCGTG
CTTTACTATACCAAAGTAAACCATCATGGCCGTCCCCACCAATTGTGGAT
GGTCAGACTTGAACTCAATGGCAAGGGCCTACACGACGCTCCTCGGCTAC
TGTATTCCATACCAGAAGAAGACGAGGCTTCTTTCCTCTCCCTTGGTACG
ACTAAAGACAAGAAATTTGTCACGTGCTCGGCGAATTCTAAAACTACGTC
GGAGGTGCAATTGCTGCCTGGTCCGGGGTCGAAGGAGGAAAGGAGGAAGG
GAGGGAGGGAAAAGGAATGTGAGCCTCTTTTGTTTCGGAAGAAGAAGGCC
GGGATACAATATTTTGTGGATCATGGGGGGGGGCTCTTCTGGGTGGTGAC
GAATGAGAAAGAGAAACAAAGTGAGGACGAGGAGAAGGAGGAGGGGGGAA
AGGAGGAGGATATAGAATATCGTCTCATGACATGCCCTACGGGCGACACG
AGTCGATGGGCGCCGTGTGTATTGGTGGAAGAAGAAGGCGGCAGCACAAG
TGGTAGTAGTATTGAAAGGAGCAGTTGTAGAACTGGTGATATTAGAAGCC
GAGTCAGAGACAATATTAACAGTAGCACCGGTAGCATTGATGACATGGAC
CTTTTCCACGACCACTGCGTTTTGTACGAACGCCTGCATGGCACACCAAG
CCTCCGCGTGATTGCACGCCGTCCCTCCTCCTCTTCTTTCTCCTCTTCTT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTCAACCCCCTACTACCTCT
TCTCCATTTCACCGACCCATTCTTCCCCGTGAAGTCGAAACCGGACGACT
TCAACCAGGCCTCAATCAAGACTATTTTGCTGACGCTGTTCGTTTCTCGC
TCACCTCTCCCATACTCCCGGATGTCACATATGAATATAATATGAAGGAG
CGTCAATTAATCGAGCTTCATCGAGAGACCTTACGGGCACGTCCACCGAT
TAAGCAGCACCAGCAGCGGGACTACGAATGCCAGCGGCATTGGGTGCAAA
GTAGACACGGTGAGGTCCAAATTCCGCTTACACTAGCCTACAAATGTGGT
TTGCCATGCCCTGCTCCTGTACTCTTGATTGCCTATGGGGCGTATGGTGT
GTCGCTTGATCTGAGTTTTAGACCCGAAATCCTTCCTTTATTGGACCGCT
GCTGGGTGATTGCTTACGCTCACGTACGAGGTGGAGGGGAGCTGGGTCGA
CGCTGGCATGCTCAGGGAAAAGGCGCGAAGAAAATAAATTCTATCCAGGA
CTATTTGTCGTGTGTTGAATGGTTACTCGAGAGGGGCTGGACACGGCCCG
GCTTGCTAGTAGGACAGGGGGCGAGCGCAGGAGCGCTGGTGGTGGCGGGG
GGGATTCATCGTTGTCCGGAGGTTTTTGGGGGAATGGTTTTAAAAGTGCC
GTTTTTAGATCTAGCGCGGACGATGACTGACCCGAGCTTGGCTCTGACTG
TACATGAGTATGATGAATGGACGGAAGGGAGGGATCCGAGAAGGGATAGA
GACATGGAAGCCCGATTGAGAGAGCTGTCTCCTTATGATACTCTGGATTT
GCTTCTGCCTTCCACAGCAGCAGGAGAAAGGGAAGGAGGGAAAGGAGGAG
GAGGGGGGAAGAAAGCGTTGCCACCTAGTTTATTGATTGCGTCCCTGGCG
GATCGACGTGTTCATTATTGGGAGGCAGCTAAATATGCAGCGAAGGCCCG
AGAGATCAGCGAGGGGGAAAGGACTGGTGAGGTGCTCTTGCGCATGGAAG
GAGATCGGGCACATGAATCCCCAATGGCACTGACGGACGTGTGCCAAGAG
GCGGCATTTGAGGCTGCGTTCATGATCACCAGATTGGGGTTAGAGGAGAA
GGGTAAGGAAGGGGACAGGGGGGGGGGGGTTGGAGGAGGGGGAGGGGGAA
GGACGACGGCGGGAGGGGTGGCGCCGGGCTGGGAGGGCTGCGCCACGGCA
TCTGGGCAAAGTCCCGCCGCTGGTGTTTTGGTAAAACAAAGTACGCTATA
AGAACCTTGTATAGCACTTATTGATGATGCAAAAAAGGAAGAATATGCAC
CAGTACAGGATCCCAACTATCAACCTGGCTTTATGTTATCTTCAATTCAA
TACAGATCCGGGCAAGCGTGTAAGCTATTTTTTTTCCTGTGCCGTTTCGA
TCTCTCAAAACGGTGCTCGAGCCTCGAATCGAATCCGTTCCCCGGAAATG
GGATGGTGAAAACTCAAAATCTCAGCGTGCAAATGCAGGCGTGCCCCCCT
CGTCTCCAACGTACGCTCCTTCACCTCCAACACACACCCTTCCTTCATGC
CTTCCTCCTTCCGTCCCTCCACATCCTCTTCCTCCAACCGATCATCCTCA
GTCAAATAGGGTTTCACAAAAGCTCTCATGTCACTCTTCGTCCATTTATC
ACCCATCGAATAAATGCTGTCCCCCAAAATAGGGTGCCCCAGCGCTGCCA
TATGCACCCTCAACTGATGCGTCCTTCCCGTCAGAGGCGTCAGCTCCACA
CGAGTGATCCTTTCGACAGTACCATCACAACCAGCAGCAGTACCAACACA
TACGGTTCGAAAGAGGGTTTTTGATTCTTTCCCCCTTTCCGGGTCCATGA
CTTGCTTCGGGCGTGTTTCGCGATCGGAACGAATAGGCAAACACACCTCG
CCTCTTGGCTGAGGCCAGAGCGGACATCCCTTCACCAAAGCCACGTATCG
TTTGCCCACCTTTTTTTCACGGAATTGCGCGCTTAGGCTTCGGGCGGCTT
GCATTGTCCGGGCCAGGACTAAGGCTCCCGAGGTTTCGCAGTCTAGGCGG
TGCACTGTTTTGACTTGTTGAAAGACACGGAGTAACCGGGTTTGTACCGA
GTCTTGACGATTTCCCTCTTTGGCTTCGAATGCCTTGAGTAGCCGCTCGT
ATATCGTTTCCATGACGTCTGAGGGGGCTTTGAGAATACGCACGCCCCAT
TCGACAAAAATGTGACGTTTGCGAGGGACGGAGGATTTGTGCGCGAGCAG
GCTTGCAAGGGTGCGTGCGAGATATGGGTCGGCGGACAGGTTGAGGGTAT
GTTGTAGAGTGACTGGGTCTTCGGTGAGCATGTCCATCCAGAGCTCTTGA
TGAGTGCGTTTACGTTTGTTGTTTGGTCGTGGTGGGGAGGGGGAGCTTGG
TGAGGTGGCAGGGAATGGAGGTGCCGCTAGGGGAGGCGATGACGATGTGG
TGTCATTGCCTTGAGCGAGAGCTGGTTGCGCCGATACAGCGGAATATTGC
TTTAGGTCTTCATCGAGAGCTAACAAAGATGGAAGCATGACCGCGTCTGC
AGTGCTACTTTCCAATGGTACTGGCGGTTTCACTTCTATCGAAGAAGCCT
CGTCCGTGCCCTCTCCCTTGACCAACGTATTGCCAGGAATGGTACTGAGC
CCAACCTGCTTGTTGACAACAATTAGGTGGTCATCGACATACAGAAGCGA
CAGATCGACTTGAGCTCCCAGGGCATCGAGGTCATGGATGGTTTTCGGGG
TAGAGGCGACATGCATTATTGATGATTGTGGTGTAAAGGGAGATGGATGA
GGGATGGCGGGAGGGGCAGAGTCAGGAGGCCCATGTTGGCGGCATCCGAT
GGATTTGATTTTACGACCTGTGTATGTGGGCTTTCGTCATTATTGATGCG
TGTAGCCCGCGCTCTTCCGACGACAAATGGTGCGCTGAATGCTCGCAGGC
AGCAGGCAGCGACGTCATAAATTGCGCGACATTTCAAATGCGCGGCAACG
CTTGAGCCTGAGC

Coding sequence (CDS) from alignment at scaffold_7:308793..313855-

>mRNA_2942 ID=mRNA_2942|Name=jgi.p|Nanoce1779_2|553396|organism=Nannochloropsis oceanica|type=CDS|length=5706bp|location=Sequence derived from alignment at scaffold_7:308793..313855- (Nannochloropsis oceanica)
TCAGAGACAATATTAACAGTAGCACCGGTAGCATTGATGACATGGACCTT
TTCCACGACCACTGCGTTTTGTACGAACGCCTGCATGGCACACCAAGCCT
CCGCGTGATTGCACGCCGTCCCTCCTCCTCTTCTTTCTCCTCTTCTTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCTTCTCAACCCCCTACTACCTCTTCT
CCATTTCACCGACCCATTCTTCCCCGTGAAGTCGAAACCGGACGACTTCA
ACCAGGCCTCAATCAAGACTATTTTGCTGACGCTGTTCGTTTCTCGCTCA
CCTCTCCCATACTCCCGGATGTCACATATGAATATAATATGAAGGAGCGT
CAATTAATCGAGCTTCATCGAGAGACCTTACGGGCACGTCCACCGATTAA
GCAGCACCAGCAGCGGGACTACGAATGCCAGCGGCATTGGGTGCAAAGTA
GACACGGTGAGGTCCAAATTCCGCTTACACTAGCCTACAAATGTGGTTTG
CCATGCCCTGCTCCTGTACTCTTGATTGCCTATGGGGCGTATGGTGTGTC
GCTTGATCTGAGTTTTAGACCCGAAATCCTTCCTTTATTGGACCGCTGCT
GGGTGATTGCTTACGCTCACGTACGAGGTGGAGGGGAGCTGGGTCGACGC
TGGCATGCTCAGGGAAAAGGCGCGAAGAAAATAAATTCTATCCAGGACTA
TTTGTCGTGTGTTGAATGGTTACTCGAGAGGGGCTGGACACGGCCCGGCT
TGCTAGTAGGACAGGGGGCGAGCGCAGGAGCGCTGGTGGTGGCGGGGGGG
ATTCATCGTTGTCCGGAGGTTTTTGGGGGAATGGTTTTAAAAGTGCCGTT
TTTAGATCTAGCGCGGACGATGACTGACCCGAGCTTGGCTCTGACTGTAC
ATGAGTATGATGAATGGACGGAAGGGAGGGATCCGAGAAGGGATAGAGAC
ATGGAAGCCCGATTGAGAGAGCTGTCTCCTTATGATACTCTGGATTTGCT
TCTGCCTTCCACAGCAGCAGGAGAAAGGGAAGGAGGGAAAGGAGGAGGAG
GGGGGAAGAAAGCGTTGCCACCTAGTTTATTGATTGCGTCCCTGGCGGAT
CGACGTGTTCATTATTGGGAGGCAGCTAAATATGCAGCGAAGGCCCGAGA
GATCAGCGAGGGGGAAAGGACTGGTGAGGTGCTCTTGCGCATGGAAGGAG
ATCGGGCACATGAATCCCCAATGGCACTGACGGACGTGTGCCAAGAGGCG
GCATTTGAGGCTGCGTTCATGATCACCAGATTGGGGTTAGAGGAGAAGGG
TAAGGAAGGGGACAGGGGGGGGGGGGTTGGAGGAGGGGGAGGGGGAAGGA
CGACGGCGGGAGGGGTGGCGCCGGGCTGGGAGGGCTGCGCCACGGCATCT
GGGCAAAGTCCCGCCGCTGGTGTTTTGGTAAAACAAAGTACGCTATAAAT
GCTGCGTCGGCCGCGACAAGTTCTGCTGCTACTGCCCCGGGAGCAATGGA
AAACTGAGCAAAAAAAGAGCCTGTGTAGCCATGTCGCCTGTCGCACCTCC
ACTTATACTCAACCAAGCCGCCCAAGGTTTCTCGCCTCGGGCCTTGTACA
CACCAAAGCCCCCTCCTCCTCCTCACTAGCGAATGCACCACCACGACCGC
CCCGAGGCCCCGATACAGACGCCTATAAATGGATGGAAGAGCCTGGCAGC
ACACAAATGCTGGCTCATTTGGACGCTGAGAATCGTTACTCGTACAAAGC
CATGCAGTCCACGCATGGCCTCCAAGCAACCCTCTTCAGGGAAATATATA
CCTATTTTCGCCCTACCTCCGAAGAAATAGAAGCAGAAAGTGGAAAAGAA
ACTACCTCGCACTTGGCTGAGGCGGGAGGTGATGGGTACATGTATTATTC
CCGGCGGCCGCGTGGGTGCAATTATCCCATCTACTATCGGCGTCCTCAAC
AATCTGCTGCTGTTGCTGCTGTTGACAGTGGCGCAGAGGATGCTTCAGAC
ACTTCTTCATCAACATCTGAATACAAAGAAGAGGCTGAAACAATTCTGTT
AAATCAAAATGCCATGCCTGACTTCTACCAACGCCAACACCTTGTAGACC
TTAAAGTGAGCCCTCCGAGCGACCGAGGGATGGAGGGAAGGAGCAGTTTA
GTGGCCTTCACACTGGCCGCCCCTGAGGCAATGGAGCAAGGCACAACATT
GTACATCCGAATTTTCGATAACAATTCATCATCTTCATCCTCGTCCACTG
CTTCGCCCTCGTCCTCGTGGTGGACCGCCGACAGGGGGATATGGGAAGGA
ATTGGCAGCTTCGAATGGGGTCATTTATCCTCTGCAGACAAGTTCAAGAT
TCGAGGCACCGGCACCAGCACCAGCACCAGTACCAACATCAGCACCAGTA
CCAGCAACACAAACTTCTCTAGTCTGCCCAAGCGAAATGATGAAGACACA
AACGAAATTAGCAAATCAACCCCAACGCGCGTGCTTTACTATACCAAAGT
AAACCATCATGGCCGTCCCCACCAATTGTGGATGGTCAGACTTGAACTCA
ATGGCAAGGGCCTACACGACGCTCCTCGGCTACTGTATTCCATACCAGAA
GAAGACGAGGCTTCTTTCCTCTCCCTTGGTACGACTAAAGACAAGAAATT
TGTCACGTGCTCGGCGAATTCTAAAACTACGTCGGAGGTGCAATTGCTGC
CTGGTCCGGGGTCGAAGGAGGAAAGGAGGAAGGGAGGGAGGGAAAAGGAA
TGTGAGCCTCTTTTGTTTCGGAAGAAGAAGGCCGGGATACAATATTTTGT
GGATCATGGGGGGGGGCTCTTCTGGGTGGTGACGAATGAGAAAGAGAAAC
AAATCAGAGACAATATTAACAGTAGCACCGGTAGCATTGATGACATGGAC
CTTTTCCACGACCACTGCGTTTTGTACGAACGCCTGCATGGCACACCAAG
CCTCCGCGTGATTGCACGCCGTCCCTCCTCCTCTTCTTTCTCCTCTTCTT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTCAACCCCCTACTACCTCT
TCTCCATTTCACCGACCCATTCTTCCCCGTGAAGTCGAAACCGGACGACT
TCAACCAGGCCTCAATCAAGACTATTTTGCTGACGCTGTTCGTTTCTCGC
TCACCTCTCCCATACTCCCGGATGTCACATATGAATATAATATGAAGGAG
CGTCAATTAATCGAGCTTCATCGAGAGACCTTACGGGCACGTCCACCGAT
TAAGCAGCACCAGCAGCGGGACTACGAATGCCAGCGGCATTGGGTGCAAA
GTAGACACGGTGAGGTCCAAATTCCGCTTACACTAGCCTACAAATGTGGT
TTGCCATGCCCTGCTCCTGTACTCTTGATTGCCTATGGGGCGTATGGTGT
GTCGCTTGATCTGAGTTTTAGACCCGAAATCCTTCCTTTATTGGACCGCT
GCTGGGTGATTGCTTACGCTCACGTACGAGGTGGAGGGGAGCTGGGTCGA
CGCTGGCATGCTCAGGGAAAAGGCGCGAAGAAAATAAATTCTATCCAGGA
CTATTTGTCGTGTGTTGAATGGTTACTCGAGAGGGGCTGGACACGGCCCG
GCTTGCTAGTAGGACAGGGGGCGAGCGCAGGAGCGCTGGTGGTGGCGGGG
GGGATTCATCGTTGTCCGGAGGTTTTTGGGGGAATGGTTTTAAAAGTGCC
GTTTTTAGATCTAGCGCGGACGATGACTGACCCGAGCTTGGCTCTGACTG
TACATGAGTATGATGAATGGACGGAAGGGAGGGATCCGAGAAGGGATAGA
GACATGGAAGCCCGATTGAGAGAGCTGTCTCCTTATGATACTCTGGATTT
GCTTCTGCCTTCCACAGCAGCAGGAGAAAGGGAAGGAGGGAAAGGAGGAG
GAGGGGGGAAGAAAGCGTTGCCACCTAGTTTATTGATTGCGTCCCTGGCG
GATCGACGTGTTCATTATTGGGAGGCAGCTAAATATGCAGCGAAGGCCCG
AGAGATCAGCGAGGGGGAAAGGACTGGTGAGGTGCTCTTGCGCATGGAAG
GAGATCGGGCACATGAATCCCCAATGGCACTGACGGACGTGTGCCAAGAG
GCGGCATTTGAGGCTGCGTTCATGATCACCAGATTGGGGTTAGAGGAGAA
GGGTAAGGAAGGGGACAGGGGGGGGGGGGTTGGAGGAGGGGGAGGGGGAA
GGACGACGGCGGGAGGGGTGGCGCCGGGCTGGGAGGGCTGCGCCACGGCA
TCTGGGCAAAGTCCCGCCGCTGGTGTTTTGGTAAAACAAAGTACGCTATA
AATGCTGCGTCGGCCGCGACAAGTTCTGCTGCTACTGCCCCGGGAGCAAT
GGAAAACTGAGCAAAAAAAGAGCCTGTGTAGCCATGTCGCCTGTCGCACC
TCCACTTATACTCAACCAAGCCGCCCAAGGTTTCTCGCCTCGGGCCTTGT
ACACACCAAAGCCCCCTCCTCCTCCTCACTAGCGAATGCACCACCACGAC
CGCCCCGAGGCCCCGATACAGACGCCTATAAATGGATGGAAGAGCCTGGC
AGCACACAAATGCTGGCTCATTTGGACGCTGAGAATCGTTACTCGTACAA
AGCCATGCAGTCCACGCATGGCCTCCAAGCAACCCTCTTCAGGGAAATAT
ATACCTATTTTCGCCCTACCTCCGAAGAAATAGAAGCAGAAAGTGGAAAA
GAAACTACCTCGCACTTGGCTGAGGCGGGAGGTGATGGGTACATGTATTA
TTCCCGGCGGCCGCGTGGGTGCAATTATCCCATCTACTATCGGCGTCCTC
AACAATCTGCTGCTGTTGCTGCTGTTGACAGTGGCGCAGAGGATGCTTCA
GACACTTCTTCATCAACATCTGAATACAAAGAAGAGGCTGAAACAATTCT
GTTAAATCAAAATGCCATGCCTGACTTCTACCAACGCCAACACCTTGTAG
ACCTTAAAGTGAGCCCTCCGAGCGACCGAGGGATGGAGGGAAGGAGCAGT
TTAGTGGCCTTCACACTGGCCGCCCCTGAGGCAATGGAGCAAGGCACAAC
ATTGTACATCCGAATTTTCGATAACAATTCATCATCTTCATCCTCGTCCA
CTGCTTCGCCCTCGTCCTCGTGGTGGACCGCCGACAGGGGGATATGGGAA
GGAATTGGCAGCTTCGAATGGGGTCATTTATCCTCTGCAGACAAGTTCAA
GATTCGAGGCACCGGCACCAGCACCAGCACCAGTACCAACATCAGCACCA
GTACCAGCAACACAAACTTCTCTAGTCTGCCCAAGCGAAATGATGAAGAC
ACAAACGAAATTAGCAAATCAACCCCAACGCGCGTGCTTTACTATACCAA
AGTAAACCATCATGGCCGTCCCCACCAATTGTGGATGGTCAGACTTGAAC
TCAATGGCAAGGGCCTACACGACGCTCCTCGGCTACTGTATTCCATACCA
GAAGAAGACGAGGCTTCTTTCCTCTCCCTTGGTACGACTAAAGACAAGAA
ATTTGTCACGTGCTCGGCGAATTCTAAAACTACGTCGGAGGTGCAATTGC
TGCCTGGTCCGGGGTCGAAGGAGGAAAGGAGGAAGGGAGGGAGGGAAAAG
GAATGTGAGCCTCTTTTGTTTCGGAAGAAGAAGGCCGGGATACAATATTT
TGTGGATCATGGGGGGGGGCTCTTCTGGGTGGTGACGAATGAGAAAGAGA
AACAAA

Synonyms

Publications