jgi.p|Nanoce1779_2|553321, mRNA_2900 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|553321
Unique NamemRNA_2900
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1233
Alignment locationscaffold_7:202035..203366 -

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Properties
Property NameValue
TranscriptId553407
TrackFilteredModels2
ProteinId553321
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:202035..203366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553321gene_2900Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553321mRNA_2900-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2900CDS_2900Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2900 ID=mRNA_2900|Name=jgi.p|Nanoce1779_2|553321|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp
ATGATCTCGCCCAACATCTCACCCAAGGAATTGACGCTGTACGAGCGATT
GCGGCGACTAGACTTCCACCCCAAGACGAAGGATGATTTCAAGGTCCGCA
CGGCTTATGGCGGGGCGACGTCCGTCGTGGCCTTGGCCTGCATGGTCTGC
TTGTTTTTAACCGAGCTCAAGTACTCGATGGATAAGGAGATTGTCGACCA
CATGTATGTTAATTCCTCGCGGGACACCCGACTGCTATTCAATTTCAACA
TGACCTTTCCCTCGGTATCGTGTCAGTTGTTGAGCGCCGATGCGATGGAC
CCGTTGGGGAATAAACAGGAGGGGGTGGAGAGCCATGTGTTCAAGACGCG
ATTAGATGCGGCAGGCAATCCACTCTCGGCAAAAACGTGGCATAAGCTGG
GGGATACCTTTACGGATGTGGATGTGTTGGCGAAGCACGAGGAGGACAGT
AAAGCGCAGTTTGTGCAGGGGGAGGAAGAGATGGAGCAATGGGTGGAATG
TGGGAACTGCTACGGGGCCGGCGAGGAGGGAGAGTGCTGCAACACTTGTT
ACAGCGTCAAGGAGGCGTACGACCGAAGGGGCTGGGCGTTCATGGGCCTG
AATGTCGAGCAATGCCAGCAAGAAAACCTGAAGAATCCTCTGGGAGAAGA
AGGGGCAGACGAAGGCTGCAACATCCATGGCTCGTTGCTGTTGACACAGG
AGAGCGGGAACGTCCACTTTGCCCCGGGCGAGCAGCTCCGGCATTCGGGC
GCCTTAAATGTGGCTGATCTGGTGATGTTCACGTTCCTTAAATTCAACAT
CTCACACGAAATCCACCACTTGTCGTTGGGGGAGGAATTCCCAGGTTTTA
AATCGCCGCTGAGTAATCAGGTGCGGAGCGTGGCGGATGGGTATGGAATG
TATCAGTATTACCTGAAGGTAGTGCCGACCGTGTATAAGCACTTGAACAA
GGCGTCCACAGTCTCGAATCAATACGCGGTCTCCGAGCACATTCGTCATA
TCAACCCTGGGAGTAATCGGGGGCTACCGGGCGTGTGGTTCTTTTATGAC
ACGTCTCCGGTGCATGTTGAGTTTGAGGAGAGGAGGAGAGGACTGTTACC
GTTCTTGACGAGTGTGTGCGCGATTGTTGGGGGCGTATTCTCAGTCTTCG
GGGTAGTCGATGGCGTAGTGCATAACTTGATTCAAAGGGGTGTAGGAGGC
GGGATGAAGAAAGGGGGGGCGCCTGGGAGTTAG
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protein sequence of jgi.p|Nanoce1779_2|553321

>mRNA_2900-protein ID=mRNA_2900-protein|Name=jgi.p|Nanoce1779_2|553321|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MISPNISPKELTLYERLRRLDFHPKTKDDFKVRTAYGGATSVVALACMVC
LFLTELKYSMDKEIVDHMYVNSSRDTRLLFNFNMTFPSVSCQLLSADAMD
PLGNKQEGVESHVFKTRLDAAGNPLSAKTWHKLGDTFTDVDVLAKHEEDS
KAQFVQGEEEMEQWVECGNCYGAGEEGECCNTCYSVKEAYDRRGWAFMGL
NVEQCQQENLKNPLGEEGADEGCNIHGSLLLTQESGNVHFAPGEQLRHSG
ALNVADLVMFTFLKFNISHEIHHLSLGEEFPGFKSPLSNQVRSVADGYGM
YQYYLKVVPTVYKHLNKASTVSNQYAVSEHIRHINPGSNRGLPGVWFFYD
TSPVHVEFEERRRGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLIQRGVGG
GMKKGGAPGS*
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mRNA from alignment at scaffold_7:202035..203366-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2900 ID=mRNA_2900|Name=jgi.p|Nanoce1779_2|553321|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp|location=Sequence derived from alignment at scaffold_7:202035..203366- (Nannochloropsis oceanica)
ATGATCTCGCCCAACATCTCACCCAAGGAATTGACGCTGTACGAGCGATT
GCGGCGACTAGACTTCCACCCCAAGACGAAGGATGATTTCAAGGTCCGCA
CGGCTTATGGCGGGGCGACGTCCGTCGTGGCCTTGGCCTGCATGGTCTGC
TTGTTTTTAACCGAGCTCAAGTACTCGATGGATAAGGAGATTGTCGACCA
CATGTATGTTAATTCCTCGCGGGACACCCGACTGCTATTCAATTTCAACA
TGACCTTTCCCTCGGTATCGTGTCAGTTGTTGAGCGCCGATGCGATGGAC
CCGTTGGGGAATAAACAGGAGGGGGTGGAGAGCCATGTGTTCAAGACGCG
ATTAGATGCGGCAGGCAATCCACTCTCGGCAAAAACGTGGCATAAGCTGG
GGGATACCTTTACGGATGTGGATGTGTTGGCGAAGCACGAGGAGGACAGT
AAAGCGCAGTTTGTGCAGGGGGAGGAAGAGATGGAGCAATGGGTGGAAGT
AGACGAGGACGAGGATGGAGAGGAGAGGGAGGTAGAAGATGAAGACGGGC
AAAAAGTGTGGCGGAAGATGAAAAGGGTGATTGGGAAGCGACGGAAGTGT
GGGAACTGCTACGGGGCCGGCGAGGAGGGAGAGTGCTGCAACACTTGTTA
CAGCGTCAAGGAGGCGTACGACCGAAGGGGCTGGGCGTTCATGGGCCTGA
ATGTCGAGCAATGCCAGCAAGAAAACCTGAAGAATCCTCTGGGAGAAGAA
GGGGCAGACGAAGGCTGCAACATCCATGGCTCGTTGCTGTTGACACAGGA
GAGCGGGAACGTCCACTTTGCCCCGGGCGAGCAGCTCCGGCATTCGGGCG
CCTTAAATGTGGCTGATCTGGTGATGTTCACGTTCCTTAAATTCAACATC
TCACACGAAATCCACCACTTGTCGTTGGGGGAGGAATTCCCAGGTTTTAA
ATCGCCGCTGAGTAATCAGGTGCGGAGCGTGGCGGATGGGTATGGAATGT
ATCAGTATTACCTGAAGGTAGTGCCGACCGTGTATAAGCACTTGAACAAG
GCGTCCACAGTCTCGAATCAATACGCGGTCTCCGAGCACATTCGTCATAT
CAACCCTGGGAGTAATCGGGGGCTACCGGGCGTGTGGTTCTTTTATGACA
CGTCTCCGGTGCATGTTGAGTTTGAGGAGAGGAGGAGAGGACTGTTACCG
TTCTTGACGAGTGTGTGCGCGATTGTTGGGGGCGTATTCTCAGTCTTCGG
GGTAGTCGATGGCGTAGTGCATAACTTGATTCAAAGGGGTGTAGGAGGCG
GGATGAAGAAAGGGGGGGCGCCTGGGAGTTAG
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Coding sequence (CDS) from alignment at scaffold_7:202035..203366-

>mRNA_2900 ID=mRNA_2900|Name=jgi.p|Nanoce1779_2|553321|organism=Nannochloropsis oceanica|type=CDS|length=2466bp|location=Sequence derived from alignment at scaffold_7:202035..203366- (Nannochloropsis oceanica)
TGTGGGAACTGCTACGGGGCCGGCGAGGAGGGAGAGTGCTGCAACACTTG
TTACAGCGTCAAGGAGGCGTACGACCGAAGGGGCTGGGCGTTCATGGGCC
TGAATGTCGAGCAATGCCAGCAAGAAAACCTGAAGAATCCTCTGGGAGAA
GAAGGGGCAGACGAAGGCTGCAACATCCATGGCTCGTTGCTGTTGACACA
GGAGAGCGGGAACGTCCACTTTGCCCCGGGCGAGCAGCTCCGGCATTCGG
GCGCCTTAAATGTGGCTGATCTGGTGATGTTCACGTTCCTTAAATTCAAC
ATCTCACACGAAATCCACCACTTGTCGTTGGGGGAGGAATTCCCAGGTTT
TAAATCGCCGCTGAGTAATCAGGTGCGGAGCGTGGCGGATGGGTATGGAA
TGTATCAGTATTACCTGAAGGTAGTGCCGACCGTGTATAAGCACTTGAAC
AAGGCGTCCACAGTCTCGAATCAATACGCGGTCTCCGAGCACATTCGTCA
TATCAACCCTGGGAGTAATCGGGGGCTACCGGGCGTGTGGTTCTTTTATG
ACACGTCTCCGGTGCATGTTGAGTTTGAGGAGAGGAGGAGAGGACTGTTA
CCGTTCTTGACGAGTGTGTGCGCGATTGTTGGGGGCGTATTCTCAGTCTT
CGGGGTAGTCGATGGCGTAGTGCATAACTTGATTCAAAGGGGTGTAGGAG
GCGGGATGAAGAAAGGGGGGGCGCCTGGGAGTTAGATGATCTCGCCCAAC
ATCTCACCCAAGGAATTGACGCTGTACGAGCGATTGCGGCGACTAGACTT
CCACCCCAAGACGAAGGATGATTTCAAGGTCCGCACGGCTTATGGCGGGG
CGACGTCCGTCGTGGCCTTGGCCTGCATGGTCTGCTTGTTTTTAACCGAG
CTCAAGTACTCGATGGATAAGGAGATTGTCGACCACATGTATGTTAATTC
CTCGCGGGACACCCGACTGCTATTCAATTTCAACATGACCTTTCCCTCGG
TATCGTGTCAGTTGTTGAGCGCCGATGCGATGGACCCGTTGGGGAATAAA
CAGGAGGGGGTGGAGAGCCATGTGTTCAAGACGCGATTAGATGCGGCAGG
CAATCCACTCTCGGCAAAAACGTGGCATAAGCTGGGGGATACCTTTACGG
ATGTGGATGTGTTGGCGAAGCACGAGGAGGACAGTAAAGCGCAGTTTGTG
CAGGGGGAGGAAGAGATGGAGCAATGGGTGGAATGTGGGAACTGCTACGG
GGCCGGCGAGGAGGGAGAGTGCTGCAACACTTGTTACAGCGTCAAGGAGG
CGTACGACCGAAGGGGCTGGGCGTTCATGGGCCTGAATGTCGAGCAATGC
CAGCAAGAAAACCTGAAGAATCCTCTGGGAGAAGAAGGGGCAGACGAAGG
CTGCAACATCCATGGCTCGTTGCTGTTGACACAGGAGAGCGGGAACGTCC
ACTTTGCCCCGGGCGAGCAGCTCCGGCATTCGGGCGCCTTAAATGTGGCT
GATCTGGTGATGTTCACGTTCCTTAAATTCAACATCTCACACGAAATCCA
CCACTTGTCGTTGGGGGAGGAATTCCCAGGTTTTAAATCGCCGCTGAGTA
ATCAGGTGCGGAGCGTGGCGGATGGGTATGGAATGTATCAGTATTACCTG
AAGGTAGTGCCGACCGTGTATAAGCACTTGAACAAGGCGTCCACAGTCTC
GAATCAATACGCGGTCTCCGAGCACATTCGTCATATCAACCCTGGGAGTA
ATCGGGGGCTACCGGGCGTGTGGTTCTTTTATGACACGTCTCCGGTGCAT
GTTGAGTTTGAGGAGAGGAGGAGAGGACTGTTACCGTTCTTGACGAGTGT
GTGCGCGATTGTTGGGGGCGTATTCTCAGTCTTCGGGGTAGTCGATGGCG
TAGTGCATAACTTGATTCAAAGGGGTGTAGGAGGCGGGATGAAGAAAGGG
GGGGCGCCTGGGAGTTAGATGATCTCGCCCAACATCTCACCCAAGGAATT
GACGCTGTACGAGCGATTGCGGCGACTAGACTTCCACCCCAAGACGAAGG
ATGATTTCAAGGTCCGCACGGCTTATGGCGGGGCGACGTCCGTCGTGGCC
TTGGCCTGCATGGTCTGCTTGTTTTTAACCGAGCTCAAGTACTCGATGGA
TAAGGAGATTGTCGACCACATGTATGTTAATTCCTCGCGGGACACCCGAC
TGCTATTCAATTTCAACATGACCTTTCCCTCGGTATCGTGTCAGTTGTTG
AGCGCCGATGCGATGGACCCGTTGGGGAATAAACAGGAGGGGGTGGAGAG
CCATGTGTTCAAGACGCGATTAGATGCGGCAGGCAATCCACTCTCGGCAA
AAACGTGGCATAAGCTGGGGGATACCTTTACGGATGTGGATGTGTTGGCG
AAGCACGAGGAGGACAGTAAAGCGCAGTTTGTGCAGGGGGAGGAAGAGAT
GGAGCAATGGGTGGAA
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Synonyms
Publications