jgi.p|Nanoce1779_2|581706, mRNA_2816 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581706
Unique NamemRNA_2816
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1322
Alignment locationscaffold_5:1272971..1274292 +

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Properties
Property NameValue
TranscriptId581792
TrackFilteredModels2
ProteinId581706
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1272971..1274292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581706gene_2816Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581706mRNA_2816-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2816CDS_2816Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2816 ID=mRNA_2816|Name=jgi.p|Nanoce1779_2|581706|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp
CTCCAAAATTCCTTCTTTGGGGAAACCATTGATTCAGCGAAATTTAACAT
TTGTCGATATCTGAATCGAATTCTGATGGTTGCAAGTAAACACGGTCATA
GTCGCTGCTTGGTTGTGTGTCATCGTATGTGGCTGATGCGAGAGAGGGCG
GCAAAATTGAGTGACTGAGAAGAAAAAGTCCATGCATTCTTGGAAATATT
TCGTGGCTGTCCTTATACTTCCCGTACAGACCATGCAGCTAGTTACCCAG
CCCTTTGATAGACGCGTTTGACTCAAAATAAAACAAATGACAGAAGGACC
TTGGACCGTAGAAATCAAGCGGCAACTTGAACGGCAGAGCAGCAGTCGTC
CTAGACTTCCTTTGCGTCTGAGTCCGGCGAAAAACCTTCTTCGAACCATG
GAAACAGTTCACACGGTCAATGCACTCACCTATTCTCTGCTCTCGCCCAA
GACAGGAACCTCCGATCGACGACCCCGTACAAAAATTCACCATCATTTAT
TCATCCTTCGTCATGCAAGTCCAGCAGCGGGAGCAGTACCTCGAGCAGCA
GCACGTCCTGGCACGCATGGCACGGCGAGGTGTCAACCCACCAGATTCCT
GGACAGACCCCCACGCCGTCGCTCTGACCCTGGCCGCTCTTCAGCAGCTC
ATCGAGACCCAGCGGCAGGAGGTGGAGGCCGTTAAACGACAGTCGTCAGA
TGTCGCCCCCGCCACGCCCTCTAGTAGTAGCAGTAGTAGTAGTAGGACTC
TGGTTACGACGACACCCACTATGCGCAACATGCGGCAAGGGGTAGCCGAG
TTGGCCATGAGCTTCAAAGCCTACGAGCGAGAGATCGAAAAGCTGCAAGC
CAAGGTTCTGGAAGCCACGCGGGAAGCCGAAGCACTTGAAGCCCTCGCAC
CGCCCCTACTGGCTCAGGATGGGACAGTGGTGGACCCGCTGCAGGTGCTG
GAAAAGGTAAGACGTAAGGCCCAGAGGGTGTTGGCGGAGCGAGAGAGGAT
TATGACGCGTGAGGAAGAGGAAGAGGCGGCGTCGTTGCGGAGGGGAGAGG
GAGTGTCGGGGCCCTTGAGTCAAGAGCCTCGGGAAGAGGCGAAACGACTG
GTGGCACGTAAGTGGATGGGGGCTGCAGGAGGCGGAGAGAGACGGACATC
GGGATGTTACCAATACACTGAGGAATTGATTGATTGAGGGAGGAAATGAG
AGGAAAGACAAGAGAAGGCACACGTACAATGTAAATAGTCAAGGAACAGA
ATAAGAGCTATAACAAAATTAAAGCAAGCAGCAAGCAATCAAAGAAGTGT
AGCAAGAAGAAATTAACATCCT
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protein sequence of jgi.p|Nanoce1779_2|581706

>mRNA_2816-protein ID=mRNA_2816-protein|Name=jgi.p|Nanoce1779_2|581706|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MHSPILCSRPRQEPPIDDPVQKFTIIYSSFVMQVQQREQYLEQQHVLARM
ARRGVNPPDSWTDPHAVALTLAALQQLIETQRQEVEAVKRQSSDVAPATP
SSSSSSSSRTLVTTTPTMRNMRQGVAELAMSFKAYEREIEKLQAKVLEAT
REAEALEALAPPLLAQDGTVVDPLQVLEKVRRKAQRVLAERERIMTREEE
EEAASLRRGEGVSGPLSQEPREEAKRLVARKWMGAAGGGERRTSGCYQYT
EELID*
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mRNA from alignment at scaffold_5:1272971..1274292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2816 ID=mRNA_2816|Name=jgi.p|Nanoce1779_2|581706|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp|location=Sequence derived from alignment at scaffold_5:1272971..1274292+ (Nannochloropsis oceanica)
CTCCAAAATTCCTTCTTTGGGGAAACCATTGATTCAGCGAAATTTAACAT
TTGTCGATATCTGAATCGAATTCTGATGGTTGCAAGTAAACACGGTCATA
GTCGCTGCTTGGTTGTGTGTCATCGTATGTGGCTGATGCGAGAGAGGGCG
GCAAAATTGAGTGACTGAGAAGAAAAAGTCCATGCATTCTTGGAAATATT
TCGTGGCTGTCCTTATACTTCCCGTACAGACCATGCAGCTAGTTACCCAG
CCCTTTGATAGACGCGTTTGACTCAAAATAAAACAAATGACAGAAGGACC
TTGGACCGTAGAAATCAAGCGGCAACTTGAACGGCAGAGCAGCAGTCGTC
CTAGACTTCCTTTGCGTCTGAGTCCGGCGAAAAACCTTCTTCGAACCATG
GAAACAGTTCACACGGTCAATGCACTCACCTATTCTCTGCTCTCGCCCAA
GACAGGAACCTCCGATCGACGACCCCGTACAAAAATTCACCATCATTTAT
TCATCCTTCGTCATGCAAGTCCAGCAGCGGGAGCAGTACCTCGAGCAGCA
GCACGTCCTGGCACGCATGGCACGGCGAGGTGTCAACCCACCAGATTCCT
GGACAGACCCCCACGCCGTCGCTCTGACCCTGGCCGCTCTTCAGCAGCTC
ATCGAGACCCAGCGGCAGGAGGTGGAGGCCGTTAAACGACAGTCGTCAGA
TGTCGCCCCCGCCACGCCCTCTAGTAGTAGCAGTAGTAGTAGTAGGACTC
TGGTTACGACGACACCCACTATGCGCAACATGCGGCAAGGGGTAGCCGAG
TTGGCCATGAGCTTCAAAGCCTACGAGCGAGAGATCGAAAAGCTGCAAGC
CAAGGTTCTGGAAGCCACGCGGGAAGCCGAAGCACTTGAAGCCCTCGCAC
CGCCCCTACTGGCTCAGGATGGGACAGTGGTGGACCCGCTGCAGGTGCTG
GAAAAGGTAAGACGTAAGGCCCAGAGGGTGTTGGCGGAGCGAGAGAGGAT
TATGACGCGTGAGGAAGAGGAAGAGGCGGCGTCGTTGCGGAGGGGAGAGG
GAGTGTCGGGGCCCTTGAGTCAAGAGCCTCGGGAAGAGGCGAAACGACTG
GTGGCACGTAAGTGGATGGGGGCTGCAGGAGGCGGAGAGAGACGGACATC
GGGATGTTACCAATACACTGAGGAATTGATTGATTGAGGGAGGAAATGAG
AGGAAAGACAAGAGAAGGCACACGTACAATGTAAATAGTCAAGGAACAGA
ATAAGAGCTATAACAAAATTAAAGCAAGCAGCAAGCAATCAAAGAAGTGT
AGCAAGAAGAAATTAACATCCT
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Coding sequence (CDS) from alignment at scaffold_5:1272971..1274292+

>mRNA_2816 ID=mRNA_2816|Name=jgi.p|Nanoce1779_2|581706|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_5:1272971..1274292+ (Nannochloropsis oceanica)
ATGCACTCACCTATTCTCTGCTCTCGCCCAAGACAGGAACCTCCGATCGA
CGACCCCGTACAAAAATTCACCATCATTTATTCATCCTTCGTCATGCAAG
TCCAGCAGCGGGAGCAGTACCTCGAGCAGCAGCACGTCCTGGCACGCATG
GCACGGCGAGGTGTCAACCCACCAGATTCCTGGACAGACCCCCACGCCGT
CGCTCTGACCCTGGCCGCTCTTCAGCAGCTCATCGAGACCCAGCGGCAGG
AGGTGGAGGCCGTTAAACGACAGTCGTCAGATGTCGCCCCCGCCACGCCC
TCTAGTAGTAGCAGTAGTAGTAGTAGGACTCTGGTTACGACGACACCCAC
TATGCGCAACATGCGGCAAGGGGTAGCCGAGTTGGCCATGAGCTTCAAAG
CCTACGAGCGAGAGATCGAAAAGCTGCAAGCCAAGGTTCTGGAAGCCACG
CGGGAAGCCGAAGCACTTGAAGCCCTCGCACCGCCCCTACTGGCTCAGGA
TGGGACAGTGGTGGACCCGCTGCAGGTGCTGGAAAAGGTAAGACGTAAGG
CCCAGAGGGTGTTGGCGGAGCGAGAGAGGATTATGACGCGTGAGGAAGAG
GAAGAGGCGGCGTCGTTGCGGAGGGGAGAGGGAGTGTCGGGGCCCTTGAG
TCAAGAGCCTCGGGAAGAGGCGAAACGACTGGTGGCACGTAAGTGGATGG
GGGCTGCAGGAGGCGGAGAGAGACGGACATCGGGATGTTACCAATACACT
GAGGAATTGATTGATTGA
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Synonyms
Publications