Properties
| Property Name | Value |
|---|
| TranscriptId | 333772 |
| Track | FilteredModels2 |
| ProteinId | 333686 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:760883..763266 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2609 ID=mRNA_2609|Name=jgi.p|Nanoce1779_2|333686|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp
CGCCGTGGATCCGACACAAACACCCATTCCCGACAAATAAAAAAGACGAG
GACAGGAACGCTAAACATGGCCATGGTATACAGGAAGAGCTTGTGTCCGA
CGTGCCTATTTTGAGGCTCCATCAGCCTGCATCGAGGGGAAAAGTGGTGC
GGGGTGTGAACAAGATGGACCATGAAGCAGAGATTAGTGGGCAAATCTGC
CAGATAGTGCATAGGGAACTGTACGCACAGGTTGACGAGTTGCAGCACCA
TTGTTGGACTGACGACGACCCGATGTCCTTCTTTGAGAGCCTGGAGGCCC
GGGTGAGGGCCGTTGATTCCCTGCTGTGCGTTGGGCTGGACCCGCACACC
GCCCAGCTCCCAGAAGCCACAGGTGCCGCGGCCTATACCTTCTGCAAACG
CATTATTGAGGCGACGTTACCACAAGCAGCGGCATACAAGCCCAACATTG
CATTTTTCGAGGCCTTAGGAAAGGAGGGATGGCAGGCATTGCTGAACGTC
ATGAAGCTCATTCCTGCTGAAGTCCCCGTCCTCCTTGATGCTAAACGCGG
AGATATAAGCACGACGGCTGAAGCGTATGCAACAGCATGTTTGGAAGGCG
TAGGCGCGACTGGTGTAACCCTGCATGGGTACATGGGAGTCGATTCCGTG
GCCCCCTTTATGAAGGACCCGCGTGCCGGCGCTTTTGTCTTGTGCAAGAC
TTCAAACCCTTCCTCCGCCGACTTTCAAACAATACCCTGCTCCTCTCCTC
AACAACCCTGGTTACTCTACGAAGAAGTCGCGCGTCGCGCAGGCGAATGG
GGCTCTAAATACCAAGAACGCATTGGTCTCGTAGTTGGTGCCACTGACAC
AGAAGCCTTGCAACGCGTCCGTGCCATAGTCCCAAACATGTGGATCCTCG
CTCCAGGAATCGGGGCCCAAGGCGGTGACTTGGAAGCGGCCTGCTCTGCA
GGTTTGTCGGCAGAAGGGAGTAAATTGTTACTTCCCATTTCAAGAGGAAT
TTCAAAGACGACGGATCCTGGAGAGGCAGCAGAAGCGTTTCGGGTTGCCA
TCAATGCGGCACGAAAGGGACCTATTCTAGCAGCAGCTGCGGCAGCATCT
GTGAGCCGAAACCGTAGTGGCTTGTCCTCACTCAAGCCGTACCAATCGGA
TTTCATCCGCTTTGCCCTCGAACGGGAGGTGTTGCTGCTGGGGTCCTTCA
CTCTGAAATCAGGCCGTGTCTCCCCCTACTTCTTCAATGCAGGCAAGTTC
ACCTCGGGTCTAGCCCTAAAAAGACTCAGCCATTTCTATGTACAATCGCT
TCTGGAAAACAAGCTCGAATTCGACGTCCTTTTTGGTCCGGCCTATAAAG
GAATCACGCTTGCATCTGCTGTTGCCGTTGCCCTGGCAGAAACTACGGGT
AGAGACGTTCCCTTTGCGTATGACCGGAAGGAGGCCAAGGACCACGGGGA
AGGGGGGAGGTTGGTTGGCGCGGATATGAGGGGAAAGAGAGTGGTGATTG
TCGATGACGTCATCACGGCGGGCACTGCGATTCGCGAGAGTATGGAGCTG
TTGGCTTCGGTGAAAGCGAAGGTGGTGGGAGTGGTGCTTGCGTTGGACAG
GCAAGAGAGGGGGGTGGAGTCGCCCTTGTCGGCTGTGCAAAGCGTGGAGC
AGCAGTTTGGATTGACGGTGCTAAGTGTGGTTGGGTTGGATGCGCTACTG
GCGTTTTTCCTGGAGGAGGGGGAGAAGGGAGAGGGAGAGAGGGGGAGGGA
GGGGTGGGAAGCGATTAGAGAGTACCGAATCCGGTATGGAGTGACCTTGC
CACAGGCTTGACTGTGAGACAGTAGTAATGGGAGGAAAGGGGGGATCCAA
TGGAGAGTGCAGTTGGAAGAAATGGTCACCGTGAAGGTGACGACGTCGTC
GGATAAAAGATGAAGGAGAAGGTGTAGAGGAAGGCGAAGAAATGAAGGTA
GAGGAAGGCGAAGAAAGGAAGGAGGACGTATAAAGTCTGGCTAGTAAAAG
AAGAAAAATCTGCTGTTTGGT back to topprotein sequence of jgi.p|Nanoce1779_2|333686 >mRNA_2609-protein ID=mRNA_2609-protein|Name=jgi.p|Nanoce1779_2|333686|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MDHEAEISGQICQIVHRELYAQVDELQHHCWTDDDPMSFFESLEARVRAV
DSLLCVGLDPHTAQLPEATGAAAYTFCKRIIEATLPQAAAYKPNIAFFEA
LGKEGWQALLNVMKLIPAEVPVLLDAKRGDISTTAEAYATACLEGVGATG
VTLHGYMGVDSVAPFMKDPRAGAFVLCKTSNPSSADFQTIPCSSPQQPWL
LYEEVARRAGEWGSKYQERIGLVVGATDTEALQRVRAIVPNMWILAPGIG
AQGGDLEAACSAGLSAEGSKLLLPISRGISKTTDPGEAAEAFRVAINAAR
KGPILAAAAAASVSRNRSGLSSLKPYQSDFIRFALEREVLLLGSFTLKSG
RVSPYFFNAGKFTSGLALKRLSHFYVQSLLENKLEFDVLFGPAYKGITLA
SAVAVALAETTGRDVPFAYDRKEAKDHGEGGRLVGADMRGKRVVIVDDVI
TAGTAIRESMELLASVKAKVVGVVLALDRQERGVESPLSAVQSVEQQFGL
TVLSVVGLDALLAFFLEEGEKGEGERGREGWEAIREYRIRYGVTLPQA* back to topmRNA from alignment at scaffold_5:760883..763266- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2609 ID=mRNA_2609|Name=jgi.p|Nanoce1779_2|333686|organism=Nannochloropsis oceanica|type=mRNA|length=2384bp|location=Sequence derived from alignment at scaffold_5:760883..763266- (Nannochloropsis oceanica)
CGCCGTGGATCCGACACAAACACCCATTCCCGACAAATAAAAAAGACGAG
GACAGGAACGCTAAACATGGCCATGGTATACAGGAAGAGCTTGTGTCCGA
CGTGCCTATTTTGAGGCTCCATCAGCCTGCATCGAGGGGAAAAGTGGTGC
GGGGTGTGAACAAGATGGACCATGAAGCAGAGATTAGTGGGCAAATCTGC
CAGATAGTGCATAGGGAACTGTACGCACAGGTTGACGAGTTGCAGCACCA
TTGTTGGACTGGTACGTGGGACGATGGATGATGGAGGTGGGGCGGTGGAA
GGCAAGAGGGGAGCAGCAGTGGACGTTGACAGGGGACGCGCGTTCCCACT
GCTGGAGAAGAGCAGTGATGCTATGACGACCAATGACAGAGCCTGTAGCA
CATAGTGGTTATTGTGGTGGGCATTGTTAGTAAGTGTCGTTGTGGTTAGC
TATAATGCACTTGCCGCGAAGAGGCCGCAGCATGCATCATCGCCAGGAAA
TCAGCCACCAGCTTCATAGCAACTCATTCATGCCCTACACGACCCCACAG
ACGACGACCCGATGTCCTTCTTTGAGAGCCTGGAGGCCCGGGTGAGGGCC
GTTGATTCCCTGCTGTGCGTTGGGCTGGACCCGCACACCGCCCAGGTACG
TAACACGCTTCCCTCTGACCTCCCACTCAATCCTCTCACACCTCTCCAAC
TCATACCACCCACCCATAGCTCCCAGAAGCCACAGGTGCCGCGGCCTATA
CCTTCTGCAAACGCATTATTGAGGCGACGTTACCACAAGCAGCGGCATAC
AAGCCCAACATTGCATTTTTCGAGGCCTTAGGAAAGGAGGGATGGCAGGC
ATTGCTGAACGTCATGAAGCTCATTCCTGCTGAAGTCCCCGTCCTCCTTG
ATGCTAAACGCGGAGATATAAGCACGACGGCTGAAGCGTATGCAACAGCA
TGTTTGGAAGGCGTAGGCGCGACTGGTGTAACCCTGCATGGGTACATGGG
AGTCGATTCCGTGGCCCCCTTTATGAAGGACCCGCGTGCCGGCGCTTTTG
TCTTGTGCAAGACTTCAAACCCTTCCTCCGCCGACTTTCAAACAATACCC
TGCTCCTCTCCTCAACAACCCTGGTTACTCTACGAAGAAGTCGCGCGTCG
CGCAGGCGAATGGGGCTCTAAATACCAAGAACGCATTGGTCTCGTAGTTG
GTGCCACTGACACAGAAGCCTTGCAACGCGTCCGTGCCATAGTCCCAAAC
ATGTGGATCCTCGCTCCAGGAATCGGGGCCCAAGGCGGTGACTTGGAAGC
GGCCTGCTCTGCAGGTTTGTCGGCAGAAGGGAGTAAATTGTTACTTCCCA
TTTCAAGAGGAATTTCAAAGACGACGGATCCTGGAGAGGCAGCAGAAGCG
TTTCGGGTTGCCATCAATGCGGCACGAAAGGGACCTATTCTAGCAGCAGC
TGCGGCAGCATCTGTGAGCCGAAACCGTAGTGGCTTGTCCTCACTCAAGC
CGTACCAATCGGATTTCATCCGCTTTGCCCTCGAACGGGAGGTGTTGCTG
CTGGGGTCCTTCACTCTGAAATCAGGCCGTGTCTCCCCCTACTTCTTCAA
TGCAGGCAAGTTCACCTCGGGTCTAGCCCTAAAAAGACTCAGCCATTTCT
ATGTACAATCGCTTCTGGAAAACAAGCTCGAATTCGACGTCCTTTTTGGT
CCGGCCTATAAAGGAATCACGCTTGCATCTGCTGTTGCCGTTGCCCTGGC
AGAAACTACGGGTAGAGACGTTCCCTTTGCGTATGACCGGAAGGAGGCCA
AGGACCACGGGGAAGGGGGGAGGTTGGTTGGCGCGGATATGAGGGGAAAG
AGAGTGGTGATTGTCGATGACGTCATCACGGCGGGCACTGCGATTCGCGA
GAGTATGGAGCTGTTGGCTTCGGTGAAAGCGAAGGTGGTGGGAGTGGTGC
TTGCGTTGGACAGGCAAGAGAGGGGGGTGGAGTCGCCCTTGTCGGCTGTG
CAAAGCGTGGAGCAGCAGTTTGGATTGACGGTGCTAAGTGTGGTTGGGTT
GGATGCGCTACTGGCGTTTTTCCTGGAGGAGGGGGAGAAGGGAGAGGGAG
AGAGGGGGAGGGAGGGGTGGGAAGCGATTAGAGAGTACCGAATCCGGTAT
GGAGTGACCTTGCCACAGGCTTGACTGTGAGACAGTAGTAATGGGAGGAA
AGGGGGGATCCAATGGAGAGTGCAGTTGGAAGAAATGGTCACCGTGAAGG
TGACGACGTCGTCGGATAAAAGATGAAGGAGAAGGTGTAGAGGAAGGCGA
AGAAATGAAGGTAGAGGAAGGCGAAGAAAGGAAGGAGGACGTATAAAGTC
TGGCTAGTAAAAGAAGAAAAATCTGCTGTTTGGT back to topCoding sequence (CDS) from alignment at scaffold_5:760883..763266- >mRNA_2609 ID=mRNA_2609|Name=jgi.p|Nanoce1779_2|333686|organism=Nannochloropsis oceanica|type=CDS|length=4941bp|location=Sequence derived from alignment at scaffold_5:760883..763266- (Nannochloropsis oceanica)
CTCCCAGAAGCCACAGGTGCCGCGGCCTATACCTTCTGCAAACGCATTAT
TGAGGCGACGTTACCACAAGCAGCGGCATACAAGCCCAACATTGCATTTT
TCGAGGCCTTAGGAAAGGAGGGATGGCAGGCATTGCTGAACGTCATGAAG
CTCATTCCTGCTGAAGTCCCCGTCCTCCTTGATGCTAAACGCGGAGATAT
AAGCACGACGGCTGAAGCGTATGCAACAGCATGTTTGGAAGGCGTAGGCG
CGACTGGTGTAACCCTGCATGGGTACATGGGAGTCGATTCCGTGGCCCCC
TTTATGAAGGACCCGCGTGCCGGCGCTTTTGTCTTGTGCAAGACTTCAAA
CCCTTCCTCCGCCGACTTTCAAACAATACCCTGCTCCTCTCCTCAACAAC
CCTGGTTACTCTACGAAGAAGTCGCGCGTCGCGCAGGCGAATGGGGCTCT
AAATACCAAGAACGCATTGGTCTCGTAGTTGGTGCCACTGACACAGAAGC
CTTGCAACGCGTCCGTGCCATAGTCCCAAACATGTGGATCCTCGCTCCAG
GAATCGGGGCCCAAGGCGGTGACTTGGAAGCGGCCTGCTCTGCAGGTTTG
TCGGCAGAAGGGAGTAAATTGTTACTTCCCATTTCAAGAGGAATTTCAAA
GACGACGGATCCTGGAGAGGCAGCAGAAGCGTTTCGGGTTGCCATCAATG
CGGCACGAAAGGGACCTATTCTAGCAGCAGCTGCGGCAGCATCTGTGAGC
CGAAACCGTAGTGGCTTGTCCTCACTCAAGCCGTACCAATCGGATTTCAT
CCGCTTTGCCCTCGAACGGGAGGTGTTGCTGCTGGGGTCCTTCACTCTGA
AATCAGGCCGTGTCTCCCCCTACTTCTTCAATGCAGGCAAGTTCACCTCG
GGTCTAGCCCTAAAAAGACTCAGCCATTTCTATGTACAATCGCTTCTGGA
AAACAAGCTCGAATTCGACGTCCTTTTTGGTCCGGCCTATAAAGGAATCA
CGCTTGCATCTGCTGTTGCCGTTGCCCTGGCAGAAACTACGGGTAGAGAC
GTTCCCTTTGCGTATGACCGGAAGGAGGCCAAGGACCACGGGGAAGGGGG
GAGGTTGGTTGGCGCGGATATGAGGGGAAAGAGAGTGGTGATTGTCGATG
ACGTCATCACGGCGGGCACTGCGATTCGCGAGAGTATGGAGCTGTTGGCT
TCGGTGAAAGCGAAGGTGGTGGGAGTGGTGCTTGCGTTGGACAGGCAAGA
GAGGGGGGTGGAGTCGCCCTTGTCGGCTGTGCAAAGCGTGGAGCAGCAGT
TTGGATTGACGGTGCTAAGTGTGGTTGGGTTGGATGCGCTACTGGCGTTT
TTCCTGGAGGAGGGGGAGAAGGGAGAGGGAGAGAGGGGGAGGGAGGGGTG
GGAAGCGATTAGAGAGTACCGAATCCGGTATGGAGTGACCTTGCCACAGG
CTTGAACGACGACCCGATGTCCTTCTTTGAGAGCCTGGAGGCCCGGGTGA
GGGCCGTTGATTCCCTGCTGTGCGTTGGGCTGGACCCGCACACCGCCCAG
ATGGACCATGAAGCAGAGATTAGTGGGCAAATCTGCCAGATAGTGCATAG
GGAACTGTACGCACAGGTTGACGAGTTGCAGCACCATTGTTGGACTGCTC
CCAGAAGCCACAGGTGCCGCGGCCTATACCTTCTGCAAACGCATTATTGA
GGCGACGTTACCACAAGCAGCGGCATACAAGCCCAACATTGCATTTTTCG
AGGCCTTAGGAAAGGAGGGATGGCAGGCATTGCTGAACGTCATGAAGCTC
ATTCCTGCTGAAGTCCCCGTCCTCCTTGATGCTAAACGCGGAGATATAAG
CACGACGGCTGAAGCGTATGCAACAGCATGTTTGGAAGGCGTAGGCGCGA
CTGGTGTAACCCTGCATGGGTACATGGGAGTCGATTCCGTGGCCCCCTTT
ATGAAGGACCCGCGTGCCGGCGCTTTTGTCTTGTGCAAGACTTCAAACCC
TTCCTCCGCCGACTTTCAAACAATACCCTGCTCCTCTCCTCAACAACCCT
GGTTACTCTACGAAGAAGTCGCGCGTCGCGCAGGCGAATGGGGCTCTAAA
TACCAAGAACGCATTGGTCTCGTAGTTGGTGCCACTGACACAGAAGCCTT
GCAACGCGTCCGTGCCATAGTCCCAAACATGTGGATCCTCGCTCCAGGAA
TCGGGGCCCAAGGCGGTGACTTGGAAGCGGCCTGCTCTGCAGGTTTGTCG
GCAGAAGGGAGTAAATTGTTACTTCCCATTTCAAGAGGAATTTCAAAGAC
GACGGATCCTGGAGAGGCAGCAGAAGCGTTTCGGGTTGCCATCAATGCGG
CACGAAAGGGACCTATTCTAGCAGCAGCTGCGGCAGCATCTGTGAGCCGA
AACCGTAGTGGCTTGTCCTCACTCAAGCCGTACCAATCGGATTTCATCCG
CTTTGCCCTCGAACGGGAGGTGTTGCTGCTGGGGTCCTTCACTCTGAAAT
CAGGCCGTGTCTCCCCCTACTTCTTCAATGCAGGCAAGTTCACCTCGGGT
CTAGCCCTAAAAAGACTCAGCCATTTCTATGTACAATCGCTTCTGGAAAA
CAAGCTCGAATTCGACGTCCTTTTTGGTCCGGCCTATAAAGGAATCACGC
TTGCATCTGCTGTTGCCGTTGCCCTGGCAGAAACTACGGGTAGAGACGTT
CCCTTTGCGTATGACCGGAAGGAGGCCAAGGACCACGGGGAAGGGGGGAG
GTTGGTTGGCGCGGATATGAGGGGAAAGAGAGTGGTGATTGTCGATGACG
TCATCACGGCGGGCACTGCGATTCGCGAGAGTATGGAGCTGTTGGCTTCG
GTGAAAGCGAAGGTGGTGGGAGTGGTGCTTGCGTTGGACAGGCAAGAGAG
GGGGGTGGAGTCGCCCTTGTCGGCTGTGCAAAGCGTGGAGCAGCAGTTTG
GATTGACGGTGCTAAGTGTGGTTGGGTTGGATGCGCTACTGGCGTTTTTC
CTGGAGGAGGGGGAGAAGGGAGAGGGAGAGAGGGGGAGGGAGGGGTGGGA
AGCGATTAGAGAGTACCGAATCCGGTATGGAGTGACCTTGCCACAGGCTT
GAACGACGACCCGATGTCCTTCTTTGAGAGCCTGGAGGCCCGGGTGAGGG
CCGTTGATTCCCTGCTGTGCGTTGGGCTGGACCCGCACACCGCCCAGATG
GACCATGAAGCAGAGATTAGTGGGCAAATCTGCCAGATAGTGCATAGGGA
ACTGTACGCACAGGTTGACGAGTTGCAGCACCATTGTTGGACTGCTCCCA
GAAGCCACAGGTGCCGCGGCCTATACCTTCTGCAAACGCATTATTGAGGC
GACGTTACCACAAGCAGCGGCATACAAGCCCAACATTGCATTTTTCGAGG
CCTTAGGAAAGGAGGGATGGCAGGCATTGCTGAACGTCATGAAGCTCATT
CCTGCTGAAGTCCCCGTCCTCCTTGATGCTAAACGCGGAGATATAAGCAC
GACGGCTGAAGCGTATGCAACAGCATGTTTGGAAGGCGTAGGCGCGACTG
GTGTAACCCTGCATGGGTACATGGGAGTCGATTCCGTGGCCCCCTTTATG
AAGGACCCGCGTGCCGGCGCTTTTGTCTTGTGCAAGACTTCAAACCCTTC
CTCCGCCGACTTTCAAACAATACCCTGCTCCTCTCCTCAACAACCCTGGT
TACTCTACGAAGAAGTCGCGCGTCGCGCAGGCGAATGGGGCTCTAAATAC
CAAGAACGCATTGGTCTCGTAGTTGGTGCCACTGACACAGAAGCCTTGCA
ACGCGTCCGTGCCATAGTCCCAAACATGTGGATCCTCGCTCCAGGAATCG
GGGCCCAAGGCGGTGACTTGGAAGCGGCCTGCTCTGCAGGTTTGTCGGCA
GAAGGGAGTAAATTGTTACTTCCCATTTCAAGAGGAATTTCAAAGACGAC
GGATCCTGGAGAGGCAGCAGAAGCGTTTCGGGTTGCCATCAATGCGGCAC
GAAAGGGACCTATTCTAGCAGCAGCTGCGGCAGCATCTGTGAGCCGAAAC
CGTAGTGGCTTGTCCTCACTCAAGCCGTACCAATCGGATTTCATCCGCTT
TGCCCTCGAACGGGAGGTGTTGCTGCTGGGGTCCTTCACTCTGAAATCAG
GCCGTGTCTCCCCCTACTTCTTCAATGCAGGCAAGTTCACCTCGGGTCTA
GCCCTAAAAAGACTCAGCCATTTCTATGTACAATCGCTTCTGGAAAACAA
GCTCGAATTCGACGTCCTTTTTGGTCCGGCCTATAAAGGAATCACGCTTG
CATCTGCTGTTGCCGTTGCCCTGGCAGAAACTACGGGTAGAGACGTTCCC
TTTGCGTATGACCGGAAGGAGGCCAAGGACCACGGGGAAGGGGGGAGGTT
GGTTGGCGCGGATATGAGGGGAAAGAGAGTGGTGATTGTCGATGACGTCA
TCACGGCGGGCACTGCGATTCGCGAGAGTATGGAGCTGTTGGCTTCGGTG
AAAGCGAAGGTGGTGGGAGTGGTGCTTGCGTTGGACAGGCAAGAGAGGGG
GGTGGAGTCGCCCTTGTCGGCTGTGCAAAGCGTGGAGCAGCAGTTTGGAT
TGACGGTGCTAAGTGTGGTTGGGTTGGATGCGCTACTGGCGTTTTTCCTG
GAGGAGGGGGAGAAGGGAGAGGGAGAGAGGGGGAGGGAGGGGTGGGAAGC
GATTAGAGAGTACCGAATCCGGTATGGAGTGACCTTGCCACAGGCTTGAA
CGACGACCCGATGTCCTTCTTTGAGAGCCTGGAGGCCCGGGTGAGGGCCG
TTGATTCCCTGCTGTGCGTTGGGCTGGACCCGCACACCGCCCAGATGGAC
CATGAAGCAGAGATTAGTGGGCAAATCTGCCAGATAGTGCATAGGGAACT
GTACGCACAGGTTGACGAGTTGCAGCACCATTGTTGGACTG back to top
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