jgi.p|Nanoce1779_2|580814, mRNA_2576 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580814
Unique NamemRNA_2576
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1301
Alignment locationscaffold_5:692620..693920 -

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Properties
Property NameValue
TranscriptId580900
TrackFilteredModels2
ProteinId580814
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:692620..693920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580814gene_2576Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580814mRNA_2576-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2576CDS_2576Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2576 ID=mRNA_2576|Name=jgi.p|Nanoce1779_2|580814|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
GACATTGGCGGCAAGTGGCAAGGGAGCATGGCTTTGAGGAATATGATGCC
CCTGTGCTTGAATCAGAAGCTCTATATGTCCGCAAGGCCGGGGAGGAAGT
GACAGAACAACTCTACAATTTTGAGGATAAGGGAGGGCGGCGTGTGGCTT
TACGTCCGGAGATGACCCCGTCGTTGGCACGGATGGTGATGGCGAAGAGG
AACGGGCTAGTCTTGCCTGTCAAGTGGTTTTCGTTTCCCCAGTGCTGGCG
GTATGAACGCATGACCAGAGGTCGTCGTCGCGAGCATTACCAATGGAACA
TGGACGTGTGGGGCATATCAGGAGTGGAAGCTGAAGCAGAGCTTCTTGCT
GCAATTGTCAGCTTCTTTGCGCGCGTAGGACTCACGGCAAATGATGTGGG
AATTAAGGTGAATAGCCGAGGAGTGTTGACAGAGGTCCTTGCTGCTTTAG
GTGTACCAGAGGAGAATTTTGCAGCTACCTGTGTGTTGGTCGATAAATTG
GAGAAGATACCGTTAAGTGCGATTCAGGACGATTTGACGGCATTGGGCTT
GGAGGAGTCAGTAGTGCTCCGGTTGCTAGAGGTGATCCAAAGTAAGGATG
TGGAGGGCTTAGAAAAGGCGATTGGCAAGGATTCGGCGGCCTTGGGTCAG
CTTAGACAATTATTTGAATATGCACGCGCGTATGGATTCGATGATTGGTT
GGTGCTAGATGCGAGCGTGGTGAGGGGCTTGGCGTACTATACTGGGGTGG
TGTTCGAGGCCTTTGATCGACAGGGGGAACTGAGGGCAATATGTGGGGGA
GGAAGGTATGATAAATTGTTGGAAGCTTTCGGAGGGGAGGCGCTGCCAGC
CGTAGGGTTTGGATTTGGTGACGCGGTGATCATAGAATTGCTTGAGAGTA
AGAAGCTAGTGCCCGCGTTGCCGCTAAGGTTGGATGCGTCGGTGTTTGCG
ATGGAGACGGGGTTGCAGACGACGGCGATTGCGGCGGCCACGTCGTTAAG
GAGTGCGGGGCTGATGGTTGACCTGCAGTTGGAGGCGCGCAAGACTAAGT
GGGCATTTAAGCATGCCGATCGTCTAGGTGCGACATATGTGGTGTTGGTG
GGGGCGGGAGAGGCGGCGGAGGGCAAGGTAAAGGTGAAGCACATGGCCAC
TGGGCAGCAAGAAACGGTGCCTGTCGTGGACCTTGGTAATTGGATGTTGG
CAGCTTCGGCGGCCTCAGCAGGTGTGATGCACCCATAATGACAAGAATCT
CTATAATTTATGAATGCAACAAGGAAAAAGAGACGTTCATGCTGTCTTTC
A
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protein sequence of jgi.p|Nanoce1779_2|580814

>mRNA_2576-protein ID=mRNA_2576-protein|Name=jgi.p|Nanoce1779_2|580814|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MTPSLARMVMAKRNGLVLPVKWFSFPQCWRYERMTRGRRREHYQWNMDVW
GISGVEAEAELLAAIVSFFARVGLTANDVGIKVNSRGVLTEVLAALGVPE
ENFAATCVLVDKLEKIPLSAIQDDLTALGLEESVVLRLLEVIQSKDVEGL
EKAIGKDSAALGQLRQLFEYARAYGFDDWLVLDASVVRGLAYYTGVVFEA
FDRQGELRAICGGGRYDKLLEAFGGEALPAVGFGFGDAVIIELLESKKLV
PALPLRLDASVFAMETGLQTTAIAAATSLRSAGLMVDLQLEARKTKWAFK
HADRLGATYVVLVGAGEAAEGKVKVKHMATGQQETVPVVDLGNWMLAASA
ASAGVMHP*
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mRNA from alignment at scaffold_5:692620..693920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2576 ID=mRNA_2576|Name=jgi.p|Nanoce1779_2|580814|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at scaffold_5:692620..693920- (Nannochloropsis oceanica)
GACATTGGCGGCAAGTGGCAAGGGAGCATGGCTTTGAGGAATATGATGCC
CCTGTGCTTGAATCAGAAGCTCTATATGTCCGCAAGGCCGGGGAGGAAGT
GACAGAACAACTCTACAATTTTGAGGATAAGGGAGGGCGGCGTGTGGCTT
TACGTCCGGAGATGACCCCGTCGTTGGCACGGATGGTGATGGCGAAGAGG
AACGGGCTAGTCTTGCCTGTCAAGTGGTTTTCGTTTCCCCAGTGCTGGCG
GTATGAACGCATGACCAGAGGTCGTCGTCGCGAGCATTACCAATGGAACA
TGGACGTGTGGGGCATATCAGGAGTGGAAGCTGAAGCAGAGCTTCTTGCT
GCAATTGTCAGCTTCTTTGCGCGCGTAGGACTCACGGCAAATGATGTGGG
AATTAAGGTGAATAGCCGAGGAGTGTTGACAGAGGTCCTTGCTGCTTTAG
GTGTACCAGAGGAGAATTTTGCAGCTACCTGTGTGTTGGTCGATAAATTG
GAGAAGATACCGTTAAGTGCGATTCAGGACGATTTGACGGCATTGGGCTT
GGAGGAGTCAGTAGTGCTCCGGTTGCTAGAGGTGATCCAAAGTAAGGATG
TGGAGGGCTTAGAAAAGGCGATTGGCAAGGATTCGGCGGCCTTGGGTCAG
CTTAGACAATTATTTGAATATGCACGCGCGTATGGATTCGATGATTGGTT
GGTGCTAGATGCGAGCGTGGTGAGGGGCTTGGCGTACTATACTGGGGTGG
TGTTCGAGGCCTTTGATCGACAGGGGGAACTGAGGGCAATATGTGGGGGA
GGAAGGTATGATAAATTGTTGGAAGCTTTCGGAGGGGAGGCGCTGCCAGC
CGTAGGGTTTGGATTTGGTGACGCGGTGATCATAGAATTGCTTGAGAGTA
AGAAGCTAGTGCCCGCGTTGCCGCTAAGGTTGGATGCGTCGGTGTTTGCG
ATGGAGACGGGGTTGCAGACGACGGCGATTGCGGCGGCCACGTCGTTAAG
GAGTGCGGGGCTGATGGTTGACCTGCAGTTGGAGGCGCGCAAGACTAAGT
GGGCATTTAAGCATGCCGATCGTCTAGGTGCGACATATGTGGTGTTGGTG
GGGGCGGGAGAGGCGGCGGAGGGCAAGGTAAAGGTGAAGCACATGGCCAC
TGGGCAGCAAGAAACGGTGCCTGTCGTGGACCTTGGTAATTGGATGTTGG
CAGCTTCGGCGGCCTCAGCAGGTGTGATGCACCCATAATGACAAGAATCT
CTATAATTTATGAATGCAACAAGGAAAAAGAGACGTTCATGCTGTCTTTC
A
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Coding sequence (CDS) from alignment at scaffold_5:692620..693920-

>mRNA_2576 ID=mRNA_2576|Name=jgi.p|Nanoce1779_2|580814|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at scaffold_5:692620..693920- (Nannochloropsis oceanica)
ATGACCCCGTCGTTGGCACGGATGGTGATGGCGAAGAGGAACGGGCTAGT
CTTGCCTGTCAAGTGGTTTTCGTTTCCCCAGTGCTGGCGGTATGAACGCA
TGACCAGAGGTCGTCGTCGCGAGCATTACCAATGGAACATGGACGTGTGG
GGCATATCAGGAGTGGAAGCTGAAGCAGAGCTTCTTGCTGCAATTGTCAG
CTTCTTTGCGCGCGTAGGACTCACGGCAAATGATGTGGGAATTAAGGTGA
ATAGCCGAGGAGTGTTGACAGAGGTCCTTGCTGCTTTAGGTGTACCAGAG
GAGAATTTTGCAGCTACCTGTGTGTTGGTCGATAAATTGGAGAAGATACC
GTTAAGTGCGATTCAGGACGATTTGACGGCATTGGGCTTGGAGGAGTCAG
TAGTGCTCCGGTTGCTAGAGGTGATCCAAAGTAAGGATGTGGAGGGCTTA
GAAAAGGCGATTGGCAAGGATTCGGCGGCCTTGGGTCAGCTTAGACAATT
ATTTGAATATGCACGCGCGTATGGATTCGATGATTGGTTGGTGCTAGATG
CGAGCGTGGTGAGGGGCTTGGCGTACTATACTGGGGTGGTGTTCGAGGCC
TTTGATCGACAGGGGGAACTGAGGGCAATATGTGGGGGAGGAAGGTATGA
TAAATTGTTGGAAGCTTTCGGAGGGGAGGCGCTGCCAGCCGTAGGGTTTG
GATTTGGTGACGCGGTGATCATAGAATTGCTTGAGAGTAAGAAGCTAGTG
CCCGCGTTGCCGCTAAGGTTGGATGCGTCGGTGTTTGCGATGGAGACGGG
GTTGCAGACGACGGCGATTGCGGCGGCCACGTCGTTAAGGAGTGCGGGGC
TGATGGTTGACCTGCAGTTGGAGGCGCGCAAGACTAAGTGGGCATTTAAG
CATGCCGATCGTCTAGGTGCGACATATGTGGTGTTGGTGGGGGCGGGAGA
GGCGGCGGAGGGCAAGGTAAAGGTGAAGCACATGGCCACTGGGCAGCAAG
AAACGGTGCCTGTCGTGGACCTTGGTAATTGGATGTTGGCAGCTTCGGCG
GCCTCAGCAGGTGTGATGCACCCATAA
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Synonyms
Publications