jgi.p|Nanoce1779_2|576721, mRNA_256 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576721
Unique Name	mRNA_256
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1956
Alignment location	scaffold_3:636971..639024 -

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Properties


Property Name	Value
TranscriptId	576807
Track	FilteredModels2
ProteinId	576721

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:636971..639024 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576721	gene_256	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576721	mRNA_256-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_256	CDS_256	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:636971..639024-
coding sequence from alignment at scaffold_3:636971..639024-

mRNA sequence

>mRNA_256 ID=mRNA_256|Name=jgi.p|Nanoce1779_2|576721|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp
CTTGCTAACTTAGTTCATCATCGGCTCAGATTTCATGCCTTCGCATGCGC
GATTTCTGGTGCCTATGGTTTGTATCGCGCGTAAGGGTAAGTGAAAGAAA
GGAAGGCGCGCCATTAATAAGGAGGAACAAATTGACTGGAGAGGTGTAAG
CGATGGTCTTGCTTGCGAAGCATGTGTGCGCGTATTATGTGGGAATCAAG
CCAAAGCAAGGGAGGCAAGCGAGCCTCTGAGATGGCCGCCTTCTTTTCGC
GTCTTCGCGACTTGTTGCTTGGATACTCCACGCTCCACATCCTGCACTAA
AGCACCCACAGCCCCACGCACAGTTTCCTTCGCGTCATAGGACACACATA
ATTGGCCCGGCGGCGCAAAATTGATCGGCTTTCTTGGTTCTATTTACCCT
GGAGAGCACCTCCATAATCAGCAGCCCAGACCATGTTTCATCTGGAATAC
ACGCTTGTCAGAATCTCCTGCGAAGCCCTTAGCTCCCACTTCCAGCGGGT
CCGCAAGCAGGTGATGCGCGAGCTTGGGCAGATTGTGACACTCCTCAAGA
AACAGGACAATCCCGACTCCACGACAGATGCACTGCGGGTGCGGTTACTC
CACCTGCGAGAGGCTTTGGTGGCGGCGGACGCGCAGGAGAAGGACTTATT
CGAGCGATGCCAACGGAAGCTCCAGACATTGGCAACTGCACAGAAAGACG
AAGAGGCTTCCCCTTCATTATCAATTGTCCCCCCACAATATCCTTCAAGA
CATGGACTGACGCTGAGAAGAAAATTACAGTTAGAGCGTTTGGTAGGCGA
GTATTTACTGCGGCAGGGCTACCTTGAGAGCCTAAGCCTGCTGGAGAAAG
AAGGGGCCAGTACACAAGGAGCAGGAGCAGGAGGAGTAGGCAAGTTGTTC
GACCTGGACATCTTCATTAAATGTCGCGCAGTGGAACGACAACTAGTCGA
AAAGCGGGATTGCATGGGTGCGTTGGCGTGGTGCGCGGACCACGCCTCCA
AGTTACGGCGATTGAATTGCCCCCTCGAATTTCAACTGCACAAGCAACAA
TTCTTGGAGCTGGTGCGAAAGGGACACCGGATTCAGGCACTAGAATATGC
GAGCGAGCATCTTGATCCGACAGCCAACAGTGCTGCTGCTGCCGTTGGTG
GTGCGGGTGGAGCTACGAATACTCCCGGTCTGTCAATTGAGCAGCTTTGG
GAGGTCCAGCAGGCCATGGCCACCCTTGCGCTTGCCGACCCGGAGGCTTG
TACCGTGCCTGAGTATCAGCGGCTTTTCGCTGTGGAACGCTTGCGTGAAT
TGGGGGATTCGTTTGCGGCGGCGGCGCGGCGGTGTTATGGGATGACCCAG
GACTATTCCACGCTCGAGGTCTGCCTTCAAGCGGGCTTGACGGCCCTCAA
GACCCCTCTGTGTCGTGTTGGGGCTCCGGGAGAAATCATGGCTAAAGCGA
AGGAGGAAGACGATGGTCAAGAGATAGGGATGGTGGCGGAGGATGAAGGG
CACTATAACCAAGACTGTCCTGTGTGCTCTCCAACCGGCCGCGCTCTGGC
AGTGGGTTTGCCGTTGGCGCATTTTGGGAATTCGTATTTGACGTGTCGGT
GCACTGGGGAAGCAATGGATGGAGGGAACCCGCCCATGGTATTGCCGAAC
GGCCGTGTGTATTCTCAGCGGGCCATCAGTGAGAATTTATTGTCCGTCGA
TGGGTCAGGGGCGGTGTGGGTGACTTGTCCTCGAACGGGCGATTCGTTTG
CGCCATCGGATGTGAAGAATATTTTCGTCATTTGAGCAATTCGTGGAGGG
GGGGGACAGCGAAAGAAGCACGCAAAAATGTATAGAAGAGTTAGAAACGG
GATCACAGGGGATAAGAGTGAGGGGGATCACTCGGCAACTTTGTATCTGT
CAGCTGTAATAACACGTGTGAGTCGATGACAAAAAGAAAAATAGATGATG
TGCACG

protein sequence of jgi.p|Nanoce1779_2|576721

>mRNA_256-protein ID=mRNA_256-protein|Name=jgi.p|Nanoce1779_2|576721|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MFHLEYTLVRISCEALSSHFQRVRKQVMRELGQIVTLLKKQDNPDSTTDA
LRVRLLHLREALVAADAQEKDLFERCQRKLQTLATAQKDEEASPSLSIVP
PQYPSRHGLTLRRKLQLERLVGEYLLRQGYLESLSLLEKEGASTQGAGAG
GVGKLFDLDIFIKCRAVERQLVEKRDCMGALAWCADHASKLRRLNCPLEF
QLHKQQFLELVRKGHRIQALEYASEHLDPTANSAAAAVGGAGGATNTPGL
SIEQLWEVQQAMATLALADPEACTVPEYQRLFAVERLRELGDSFAAAARR
CYGMTQDYSTLEVCLQAGLTALKTPLCRVGAPGEIMAKAKEEDDGQEIGM
VAEDEGHYNQDCPVCSPTGRALAVGLPLAHFGNSYLTCRCTGEAMDGGNP
PMVLPNGRVYSQRAISENLLSVDGSGAVWVTCPRTGDSFAPSDVKNIFVI
*

mRNA from alignment at scaffold_3:636971..639024-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_256 ID=mRNA_256|Name=jgi.p|Nanoce1779_2|576721|organism=Nannochloropsis oceanica|type=mRNA|length=2054bp|location=Sequence derived from alignment at scaffold_3:636971..639024- (Nannochloropsis oceanica)
CTTGCTAACTTAGTTCATCATCGGCTCAGATTTCATGCCTTCGCATGCGC
GATTTCTGGTGCCTATGGTTTGTATCGCGCGTAAGGGTAAGTGAAAGAAA
GGAAGGCGCGCCATTAATAAGGAGGAACAAATTGACTGGAGAGGTGTAAG
CGATGGTCTTGCTTGCGAAGCATGTGTGCGCGTATTATGTGGGAATCAAG
CCAAAGCAAGGGAGGCAAGCGAGCCTCTGAGATGGCCGCCTTCTTTTCGC
GTCTTCGCGACTTGTTGCTTGGATACTCCACGCTCCACATCCTGCACTAA
AGCACCCACAGCCCCACGCACAGTTTCCTTCGCGTCATAGGACACACATA
ATTGGCCCGGCGGCGCAAAATTGATCGGCTTTCTTGGTTCTATTTACCCT
GGAGAGCACCTCCATAATCAGCAGCCCAGACCATGTTTCATCTGGAATAC
ACGCTTGTCAGAATCTCCTGCGAAGCCCTTAGCTCCCACTTCCAGCGGGT
CCGCAAGCAGGTATCAATTGAGATGGCTGATTTATTTGTAAAAGGCGGGA
TGCCGTTGCCCGTCCTCCGTCCAACGAAAGATCCTCATCCCCATACAACC
CACCCTAGGTGATGCGCGAGCTTGGGCAGATTGTGACACTCCTCAAGAAA
CAGGACAATCCCGACTCCACGACAGATGCACTGCGGGTGCGGTTACTCCA
CCTGCGAGAGGCTTTGGTGGCGGCGGACGCGCAGGAGAAGGACTTATTCG
AGCGATGCCAACGGAAGCTCCAGACATTGGCAACTGCACAGAAAGACGAA
GAGGCTTCCCCTTCATTATCAATTGTCCCCCCACAATATCCTTCAAGACA
TGGACTGACGCTGAGAAGAAAATTACAGTTAGAGCGTTTGGTAGGCGAGT
ATTTACTGCGGCAGGGCTACCTTGAGAGCCTAAGCCTGCTGGAGAAAGAA
GGGGCCAGTACACAAGGAGCAGGAGCAGGAGGAGTAGGCAAGTTGTTCGA
CCTGGACATCTTCATTAAATGTCGCGCAGTGGAACGACAACTAGTCGAAA
AGCGGGATTGCATGGGTGCGTTGGCGTGGTGCGCGGACCACGCCTCCAAG
TTACGGCGATTGAATTGCCCCCTCGAATTTCAACTGCACAAGCAACAATT
CTTGGAGCTGGTGCGAAAGGGACACCGGATTCAGGCACTAGAATATGCGA
GCGAGCATCTTGATCCGACAGCCAACAGTGCTGCTGCTGCCGTTGGTGGT
GCGGGTGGAGCTACGAATACTCCCGGTCTGTCAATTGAGCAGCTTTGGGA
GGTCCAGCAGGCCATGGCCACCCTTGCGCTTGCCGACCCGGAGGCTTGTA
CCGTGCCTGAGTATCAGCGGCTTTTCGCTGTGGAACGCTTGCGTGAATTG
GGGGATTCGTTTGCGGCGGCGGCGCGGCGGTGTTATGGGATGACCCAGGA
CTATTCCACGCTCGAGGTCTGCCTTCAAGCGGGCTTGACGGCCCTCAAGA
CCCCTCTGTGTCGTGTTGGGGCTCCGGGAGAAATCATGGCTAAAGCGAAG
GAGGAAGACGATGGTCAAGAGATAGGGATGGTGGCGGAGGATGAAGGGCA
CTATAACCAAGACTGTCCTGTGTGCTCTCCAACCGGCCGCGCTCTGGCAG
TGGGTTTGCCGTTGGCGCATTTTGGGAATTCGTATTTGACGTGTCGGTGC
ACTGGGGAAGCAATGGATGGAGGGAACCCGCCCATGGTATTGCCGAACGG
CCGTGTGTATTCTCAGCGGGCCATCAGTGAGAATTTATTGTCCGTCGATG
GGTCAGGGGCGGTGTGGGTGACTTGTCCTCGAACGGGCGATTCGTTTGCG
CCATCGGATGTGAAGAATATTTTCGTCATTTGAGCAATTCGTGGAGGGGG
GGGACAGCGAAAGAAGCACGCAAAAATGTATAGAAGAGTTAGAAACGGGA
TCACAGGGGATAAGAGTGAGGGGGATCACTCGGCAACTTTGTATCTGTCA
GCTGTAATAACACGTGTGAGTCGATGACAAAAAGAAAAATAGATGATGTG
CACG

Coding sequence (CDS) from alignment at scaffold_3:636971..639024-

>mRNA_256 ID=mRNA_256|Name=jgi.p|Nanoce1779_2|576721|organism=Nannochloropsis oceanica|type=CDS|length=2706bp|location=Sequence derived from alignment at scaffold_3:636971..639024- (Nannochloropsis oceanica)
GTGATGCGCGAGCTTGGGCAGATTGTGACACTCCTCAAGAAACAGGACAA
TCCCGACTCCACGACAGATGCACTGCGGGTGCGGTTACTCCACCTGCGAG
AGGCTTTGGTGGCGGCGGACGCGCAGGAGAAGGACTTATTCGAGCGATGC
CAACGGAAGCTCCAGACATTGGCAACTGCACAGAAAGACGAAGAGGCTTC
CCCTTCATTATCAATTGTCCCCCCACAATATCCTTCAAGACATGGACTGA
CGCTGAGAAGAAAATTACAGTTAGAGCGTTTGGTAGGCGAGTATTTACTG
CGGCAGGGCTACCTTGAGAGCCTAAGCCTGCTGGAGAAAGAAGGGGCCAG
TACACAAGGAGCAGGAGCAGGAGGAGTAGGCAAGTTGTTCGACCTGGACA
TCTTCATTAAATGTCGCGCAGTGGAACGACAACTAGTCGAAAAGCGGGAT
TGCATGGGTGCGTTGGCGTGGTGCGCGGACCACGCCTCCAAGTTACGGCG
ATTGAATTGCCCCCTCGAATTTCAACTGCACAAGCAACAATTCTTGGAGC
TGGTGCGAAAGGGACACCGGATTCAGGCACTAGAATATGCGAGCGAGCAT
CTTGATCCGACAGCCAACAGTGCTGCTGCTGCCGTTGGTGGTGCGGGTGG
AGCTACGAATACTCCCGGTCTGTCAATTGAGCAGCTTTGGGAGGTCCAGC
AGGCCATGGCCACCCTTGCGCTTGCCGACCCGGAGGCTTGTACCGTGCCT
GAGTATCAGCGGCTTTTCGCTGTGGAACGCTTGCGTGAATTGGGGGATTC
GTTTGCGGCGGCGGCGCGGCGGTGTTATGGGATGACCCAGGACTATTCCA
CGCTCGAGGTCTGCCTTCAAGCGGGCTTGACGGCCCTCAAGACCCCTCTG
TGTCGTGTTGGGGCTCCGGGAGAAATCATGGCTAAAGCGAAGGAGGAAGA
CGATGGTCAAGAGATAGGGATGGTGGCGGAGGATGAAGGGCACTATAACC
AAGACTGTCCTGTGTGCTCTCCAACCGGCCGCGCTCTGGCAGTGGGTTTG
CCGTTGGCGCATTTTGGGAATTCGTATTTGACGTGTCGGTGCACTGGGGA
AGCAATGGATGGAGGGAACCCGCCCATGGTATTGCCGAACGGCCGTGTGT
ATTCTCAGCGGGCCATCAGTGAGAATTTATTGTCCGTCGATGGGTCAGGG
GCGGTGTGGGTGACTTGTCCTCGAACGGGCGATTCGTTTGCGCCATCGGA
TGTGAAGAATATTTTCGTCATTTGAATGTTTCATCTGGAATACACGCTTG
TCAGAATCTCCTGCGAAGCCCTTAGCTCCCACTTCCAGCGGGTCCGCAAG
CAGGTGATGCGCGAGCTTGGGCAGATTGTGACACTCCTCAAGAAACAGGA
CAATCCCGACTCCACGACAGATGCACTGCGGGTGCGGTTACTCCACCTGC
GAGAGGCTTTGGTGGCGGCGGACGCGCAGGAGAAGGACTTATTCGAGCGA
TGCCAACGGAAGCTCCAGACATTGGCAACTGCACAGAAAGACGAAGAGGC
TTCCCCTTCATTATCAATTGTCCCCCCACAATATCCTTCAAGACATGGAC
TGACGCTGAGAAGAAAATTACAGTTAGAGCGTTTGGTAGGCGAGTATTTA
CTGCGGCAGGGCTACCTTGAGAGCCTAAGCCTGCTGGAGAAAGAAGGGGC
CAGTACACAAGGAGCAGGAGCAGGAGGAGTAGGCAAGTTGTTCGACCTGG
ACATCTTCATTAAATGTCGCGCAGTGGAACGACAACTAGTCGAAAAGCGG
GATTGCATGGGTGCGTTGGCGTGGTGCGCGGACCACGCCTCCAAGTTACG
GCGATTGAATTGCCCCCTCGAATTTCAACTGCACAAGCAACAATTCTTGG
AGCTGGTGCGAAAGGGACACCGGATTCAGGCACTAGAATATGCGAGCGAG
CATCTTGATCCGACAGCCAACAGTGCTGCTGCTGCCGTTGGTGGTGCGGG
TGGAGCTACGAATACTCCCGGTCTGTCAATTGAGCAGCTTTGGGAGGTCC
AGCAGGCCATGGCCACCCTTGCGCTTGCCGACCCGGAGGCTTGTACCGTG
CCTGAGTATCAGCGGCTTTTCGCTGTGGAACGCTTGCGTGAATTGGGGGA
TTCGTTTGCGGCGGCGGCGCGGCGGTGTTATGGGATGACCCAGGACTATT
CCACGCTCGAGGTCTGCCTTCAAGCGGGCTTGACGGCCCTCAAGACCCCT
CTGTGTCGTGTTGGGGCTCCGGGAGAAATCATGGCTAAAGCGAAGGAGGA
AGACGATGGTCAAGAGATAGGGATGGTGGCGGAGGATGAAGGGCACTATA
ACCAAGACTGTCCTGTGTGCTCTCCAACCGGCCGCGCTCTGGCAGTGGGT
TTGCCGTTGGCGCATTTTGGGAATTCGTATTTGACGTGTCGGTGCACTGG
GGAAGCAATGGATGGAGGGAACCCGCCCATGGTATTGCCGAACGGCCGTG
TGTATTCTCAGCGGGCCATCAGTGAGAATTTATTGTCCGTCGATGGGTCA
GGGGCGGTGTGGGTGACTTGTCCTCGAACGGGCGATTCGTTTGCGCCATC
GGATGTGAAGAATATTTTCGTCATTTGAATGTTTCATCTGGAATACACGC
TTGTCAGAATCTCCTGCGAAGCCCTTAGCTCCCACTTCCAGCGGGTCCGC
AAGCAG

Synonyms

Publications