jgi.p|Nanoce1779_2|580224, mRNA_2400 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580224
Unique Name	mRNA_2400
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1540
Alignment location	scaffold_5:246896..248651 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580310
Track	FilteredModels2
ProteinId	580224

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:246896..248651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580224	gene_2400	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580224	mRNA_2400-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2400	CDS_2400	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:246896..248651+
coding sequence from alignment at scaffold_5:246896..248651+

mRNA sequence

>mRNA_2400 ID=mRNA_2400|Name=jgi.p|Nanoce1779_2|580224|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp
AGGCTATGGGATGCTCCCAGAGCAAGTCTATCTCGCCATCGAGCCCGCGT
GCGCAAGGACAGACCTCATGTGACTTAACCACGACTTCCTCGACGACGAC
AGCTGCTCAAGCAGCAACAAGCGCATGTCCAATTGCAGCTTCCCCTAGCA
ATACGGACGTCCGACAAGATAGCTCTGTCCTTCTCTCAGTGATACCATCT
ACGCCTTCTCCCCGTACCTTCCCAGGAGATTTAACTCCCCGTGGCGGCGG
CGAGGACGACGATTGCCGTAGCGACGAAGCCCCTTCCCCTCGTCTTGCTG
CCGTAACCGAAGGCGCTACTATCCTCCTTAGTCCACGCGATGCAGCATCT
CCACCATCACCACTACCACAGATAGCGACCACGTCAAGTGTCCAAATCGC
TCACAAGAAAAGGACGTTGCCCGCCCCCTTTAATGGCAAAATATGGCTCG
CCTCTCCATCTTCTGCTCCTCTTACACTTGGGTCCGGCCCGCGCCGCCCC
GCGACCAATCCGACCCCTACTTCTCATCACGACGTACTTCTTAATGTCTA
TTCTCCATTAACGCACTCTCAAGAGATTGCGGCGATGAGTAGCACGACTG
GGGGTGATGGTAGCGGGGGTGGAAGTGGCATATCCGCGAGGGGGGGAAGG
AGGCCGCGGCCGCTGGCGATCTCGACGGATTCTCATTTTCACCTGAGCAC
GATATTGGGACATGTTCTGATAGGCGGGGATGAAGTCAGTGACAACTTGA
CGGTGTTGCGGCAGTTGAATGTGAAGAGTGTGGTGAATGCCACGACGGAG
GGAAAGGAGACGTTAGGGGATCTATGTTACATTAAGCTCAATTGGAGCGA
TGACATAACCCAGCCAATCCTTCCGGATCTTCCGCGTGCCTTTGCCACTA
TTGATCTCGCCAAGGACGAAGGGGGGGTTTGCCTCGTTCATTGCAAGAAA
GGTATGAGTCGGTCAGGGGCCGTGGTTGTTGCTTATTTGATGTTTCACAA
CCCCAAAATGTCTCTGTTGGACGCGCTGACGTATGCGAGGAGTCGGCGGG
CGATTGTTGCGCCTAACCTCGGGTTTATGGCCCAATTGATCGAATGGGAA
AGGGAGCACAGGGGAGGGAGGGTGACAGTTGATCTGGCCAAGTACGAGGA
GAACAGGTTCGGCGATACGGCGGTGTTGCTGTGTGGGGCATGAAGGGGGA
CGGGGAGGAAGGTAAACGGAGAGGAGGAGAATGACGTTAAGAGAGGCGGG
ATGTCTTAAGAGGAGAGGGAGGGCATCGGGTTTTGCCTGGCAAGAAAGAT
GGATAGGTTGATGGAGAGAAAATTGCGTGGTTGAGAAAATGAGTGGGATA
CAGGACAAGAAGAAGAAGACAAAGGGTGCAAGACGGTGTTATACAAGAAA
TAGAAGATAAAGACGAAGACGAGTAAGAACAAGGGTATAGCAAAGGTCAG
GGAGACTTCAAGTACAAAGCAAAGCTATTCAGCCCCCCTGTATCCTAACT
TCAACGAAACTTCTACAAACGAAACTTTTGTCGCTGGGTC

protein sequence of jgi.p|Nanoce1779_2|580224

>mRNA_2400-protein ID=mRNA_2400-protein|Name=jgi.p|Nanoce1779_2|580224|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MGCSQSKSISPSSPRAQGQTSCDLTTTSSTTTAAQAATSACPIAASPSNT
DVRQDSSVLLSVIPSTPSPRTFPGDLTPRGGGEDDDCRSDEAPSPRLAAV
TEGATILLSPRDAASPPSPLPQIATTSSVQIAHKKRTLPAPFNGKIWLAS
PSSAPLTLGSGPRRPATNPTPTSHHDVLLNVYSPLTHSQEIAAMSSTTGG
DGSGGGSGISARGGRRPRPLAISTDSHFHLSTILGHVLIGGDEVSDNLTV
LRQLNVKSVVNATTEGKETLGDLCYIKLNWSDDITQPILPDLPRAFATID
LAKDEGGVCLVHCKKGMSRSGAVVVAYLMFHNPKMSLLDALTYARSRRAI
VAPNLGFMAQLIEWEREHRGGRVTVDLAKYEENRFGDTAVLLCGA*

mRNA from alignment at scaffold_5:246896..248651+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2400 ID=mRNA_2400|Name=jgi.p|Nanoce1779_2|580224|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp|location=Sequence derived from alignment at scaffold_5:246896..248651+ (Nannochloropsis oceanica)
AGGCTATGGGATGCTCCCAGAGCAAGTCTATCTCGCCATCGAGCCCGCGT
GCGCAAGGACAGACCTCATGTGACTTAACCACGACTTCCTCGACGACGAC
AGCTGCTCAAGCAGCAACAAGCGCATGTCCAATTGCAGCTTCCCCTAGCA
ATACGGACGTCCGACAAGATAGCTCTGTCCTTCTCTCAGTGATACCATCT
ACGCCTTCTCCCCGTACCTTCCCAGGAGATTTAACTCCCCGTGGCGGCGG
CGAGGACGACGATTGCCGTAGCGACGAAGCCCCTTCCCCTCGTCTTGCTG
CCGTAACCGAAGGCGCTACTATCCTCCTTAGTCCACGCGATGCAGCATCT
CCACCATCACCACTACCACAGATAGCGACCACGTCAAGTGTCCAAATCGC
TCACAAGAAAAGGACGTTGCCCGCCCCCTTTAATGGCAAAATATGGCTCG
CCTCTCCATCTTCTGCTCCTCTTACACTTGGGTCCGGCCCGCGCCGCCCC
GCGACCAATCCGACCCCTACTTCTCATCACGACGTACTTCTTAATGTCTA
TTCTCCATTAACGCACTCTCAAGAGATTGCGGCGATGAGTAGCACGACTG
GGGGTGATGGTAGCGGGGGTGGAAGTGGCATATCCGCGAGGGGGGGAAGG
AGGCCGCGGCCGCTGGCGATCTCGACGGATTCTCATTTTCACCTGAGCAC
GATATTGGGACATGTTCTGATAGGCGGGGATGAAGTCAGTGACAACTTGA
CGGTGTTGCGGCAGTTGAATGTGAAGAGTGTGGTGAATGCCACGACGGAG
GGAAAGGAGACGTTAGGGGGTACGTGTAGGGGGTGGGTGAATGTGATTGA
GTCTGTGGGTTGATCCGCTTGGCCGTGGGCCAGAGTGATTTGCGTGATTA
TTCCTGCGAGTTTCCATTATGTATTTTGCCATCCTCCCTCCATGGGGTTT
CCTCCCTTGATTGACATATCACCTCTCCTCATCCCTGGTCTTGATCCCTC
CCTTCCTCCCCACCTCCCTCTCTCCCTCCTCATAGATCTATGTTACATTA
AGCTCAATTGGAGCGATGACATAACCCAGCCAATCCTTCCGGATCTTCCG
CGTGCCTTTGCCACTATTGATCTCGCCAAGGACGAAGGGGGGGTTTGCCT
CGTTCATTGCAAGAAAGGTATGAGTCGGTCAGGGGCCGTGGTTGTTGCTT
ATTTGATGTTTCACAACCCCAAAATGTCTCTGTTGGACGCGCTGACGTAT
GCGAGGAGTCGGCGGGCGATTGTTGCGCCTAACCTCGGGTTTATGGCCCA
ATTGATCGAATGGGAAAGGGAGCACAGGGGAGGGAGGGTGACAGTTGATC
TGGCCAAGTACGAGGAGAACAGGTTCGGCGATACGGCGGTGTTGCTGTGT
GGGGCATGAAGGGGGACGGGGAGGAAGGTAAACGGAGAGGAGGAGAATGA
CGTTAAGAGAGGCGGGATGTCTTAAGAGGAGAGGGAGGGCATCGGGTTTT
GCCTGGCAAGAAAGATGGATAGGTTGATGGAGAGAAAATTGCGTGGTTGA
GAAAATGAGTGGGATACAGGACAAGAAGAAGAAGACAAAGGGTGCAAGAC
GGTGTTATACAAGAAATAGAAGATAAAGACGAAGACGAGTAAGAACAAGG
GTATAGCAAAGGTCAGGGAGACTTCAAGTACAAAGCAAAGCTATTCAGCC
CCCCTGTATCCTAACTTCAACGAAACTTCTACAAACGAAACTTTTGTCGC
TGGGTC

Coding sequence (CDS) from alignment at scaffold_5:246896..248651+

>mRNA_2400 ID=mRNA_2400|Name=jgi.p|Nanoce1779_2|580224|organism=Nannochloropsis oceanica|type=CDS|length=2376bp|location=Sequence derived from alignment at scaffold_5:246896..248651+ (Nannochloropsis oceanica)
ATGGGATGCTCCCAGAGCAAGTCTATCTCGCCATCGAGCCCGCGTGCGCA
AGGACAGACCTCATGTGACTTAACCACGACTTCCTCGACGACGACAGCTG
CTCAAGCAGCAACAAGCGCATGTCCAATTGCAGCTTCCCCTAGCAATACG
GACGTCCGACAAGATAGCTCTGTCCTTCTCTCAGTGATACCATCTACGCC
TTCTCCCCGTACCTTCCCAGGAGATTTAACTCCCCGTGGCGGCGGCGAGG
ACGACGATTGCCGTAGCGACGAAGCCCCTTCCCCTCGTCTTGCTGCCGTA
ACCGAAGGCGCTACTATCCTCCTTAGTCCACGCGATGCAGCATCTCCACC
ATCACCACTACCACAGATAGCGACCACGTCAAGTGTCCAAATCGCTCACA
AGAAAAGGACGTTGCCCGCCCCCTTTAATGGCAAAATATGGCTCGCCTCT
CCATCTTCTGCTCCTCTTACACTTGGGTCCGGCCCGCGCCGCCCCGCGAC
CAATCCGACCCCTACTTCTCATCACGACGTACTTCTTAATGTCTATTCTC
CATTAACGCACTCTCAAGAGATTGCGGCGATGAGTAGCACGACTGGGGGT
GATGGTAGCGGGGGTGGAAGTGGCATATCCGCGAGGGGGGGAAGGAGGCC
GCGGCCGCTGGCGATCTCGACGGATTCTCATTTTCACCTGAGCACGATAT
TGGGACATGTTCTGATAGGCGGGGATGAAGTCAGTGACAACTTGACGGTG
TTGCGGCAGTTGAATGTGAAGAGTGTGGTGAATGCCACGACGGAGGGAAA
GGAGACGTTAGGGGATCTATGTTACATTAAGCTCAATTGGAGCGATGACA
TAACCCAGCCAATCCTTCCGGATCTTCCGCGTGCCTTTGCCACTATTGAT
CTCGCCAAGGACGAAGGGGGGGTTTGCCTCGTTCATTGCAAGAAAGGTAT
GAGTCGGTCAGGGGCCGTGGTTGTTGCTTATTTGATGTTTCACAACCCCA
AAATGTCTCTGTTGGACGCGCTGACGTATGCGAGGAGTCGGCGGGCGATT
GTTGCGCCTAACCTCGGGTTTATGGCCCAATTGATCGAATGGGAAAGGGA
GCACAGGGGAGGGAGGGTGACAGTTGATCTGGCCAAGTACGAGGAGAACA
GGTTCGGCGATACGGCGGTGTTGCTGTGTGGGGCATGAATGGGATGCTCC
CAGAGCAAGTCTATCTCGCCATCGAGCCCGCGTGCGCAAGGACAGACCTC
ATGTGACTTAACCACGACTTCCTCGACGACGACAGCTGCTCAAGCAGCAA
CAAGCGCATGTCCAATTGCAGCTTCCCCTAGCAATACGGACGTCCGACAA
GATAGCTCTGTCCTTCTCTCAGTGATACCATCTACGCCTTCTCCCCGTAC
CTTCCCAGGAGATTTAACTCCCCGTGGCGGCGGCGAGGACGACGATTGCC
GTAGCGACGAAGCCCCTTCCCCTCGTCTTGCTGCCGTAACCGAAGGCGCT
ACTATCCTCCTTAGTCCACGCGATGCAGCATCTCCACCATCACCACTACC
ACAGATAGCGACCACGTCAAGTGTCCAAATCGCTCACAAGAAAAGGACGT
TGCCCGCCCCCTTTAATGGCAAAATATGGCTCGCCTCTCCATCTTCTGCT
CCTCTTACACTTGGGTCCGGCCCGCGCCGCCCCGCGACCAATCCGACCCC
TACTTCTCATCACGACGTACTTCTTAATGTCTATTCTCCATTAACGCACT
CTCAAGAGATTGCGGCGATGAGTAGCACGACTGGGGGTGATGGTAGCGGG
GGTGGAAGTGGCATATCCGCGAGGGGGGGAAGGAGGCCGCGGCCGCTGGC
GATCTCGACGGATTCTCATTTTCACCTGAGCACGATATTGGGACATGTTC
TGATAGGCGGGGATGAAGTCAGTGACAACTTGACGGTGTTGCGGCAGTTG
AATGTGAAGAGTGTGGTGAATGCCACGACGGAGGGAAAGGAGACGTTAGG
GGATCTATGTTACATTAAGCTCAATTGGAGCGATGACATAACCCAGCCAA
TCCTTCCGGATCTTCCGCGTGCCTTTGCCACTATTGATCTCGCCAAGGAC
GAAGGGGGGGTTTGCCTCGTTCATTGCAAGAAAGGTATGAGTCGGTCAGG
GGCCGTGGTTGTTGCTTATTTGATGTTTCACAACCCCAAAATGTCTCTGT
TGGACGCGCTGACGTATGCGAGGAGTCGGCGGGCGATTGTTGCGCCTAAC
CTCGGGTTTATGGCCCAATTGATCGAATGGGAAAGGGAGCACAGGGGAGG
GAGGGTGACAGTTGATCTGGCCAAGTACGAGGAGAACAGGTTCGGCGATA
CGGCGGTGTTGCTGTGTGGGGCATGA

Synonyms

Publications