jgi.p|Nanoce1779_2|580224, gene_2400 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580224
Unique Namegene_2400
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_5:246896..248651 +

Link to JBrowse

Properties
Property NameValue
TranscriptId580310
ProteinId580224
Product nameProtein-tyrosine phosphatase-like protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:246896..248651 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004725protein tyrosine phosphatase activity
GO:0016791phosphatase activity
GO:0008138protein tyrosine/serine/threonine phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0016311dephosphorylation
GO:0006470protein dephosphorylation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL071ncniL071Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00830NO07G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580224mRNA_2400-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580224mRNA_2400Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|580224

>mRNA_2400-protein ID=mRNA_2400-protein|Name=jgi.p|Nanoce1779_2|580224|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MGCSQSKSISPSSPRAQGQTSCDLTTTSSTTTAAQAATSACPIAASPSNT
DVRQDSSVLLSVIPSTPSPRTFPGDLTPRGGGEDDDCRSDEAPSPRLAAV
TEGATILLSPRDAASPPSPLPQIATTSSVQIAHKKRTLPAPFNGKIWLAS
PSSAPLTLGSGPRRPATNPTPTSHHDVLLNVYSPLTHSQEIAAMSSTTGG
DGSGGGSGISARGGRRPRPLAISTDSHFHLSTILGHVLIGGDEVSDNLTV
LRQLNVKSVVNATTEGKETLGDLCYIKLNWSDDITQPILPDLPRAFATID
LAKDEGGVCLVHCKKGMSRSGAVVVAYLMFHNPKMSLLDALTYARSRRAI
VAPNLGFMAQLIEWEREHRGGRVTVDLAKYEENRFGDTAVLLCGA*
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Synonyms
Publications