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Properties
Property Name | Value |
TranscriptId | 579974 |
Track | FilteredModels2 |
ProteinId | 579888 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_4 | supercontig | scaffold_4:1359704..1362214 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2308 ID=mRNA_2308|Name=jgi.p|Nanoce1779_2|579888|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp ACGACCGAGCATCCTTCTCATCCAGTATCTGCATTTCCTCCTCCAAGCAA CGCCTCGGGCCATCTCGCTGCTGCTGCTGATGCTGCTGCTGATGCTGCTG CTCCAATGCCCGACATGGACCCCCCCGTGAACGCCATCGAGGAACAAATC GCATTGCACGGACACGCTCTCCCCGCCCAAACCTGTAAGGGATCCTTTGA GGACGGGTTTGCCGGATGGACAAGCTTGGAAGGGGCGCGGAATGAGTCGA TTGTGCTCGTATCCACGCCCGTGCGTGCCGGCAAGCAGGCGGCCCGTGTG ACGGTTAATCCTGGGGAGATGACGCACCATGGAAACAGAGCGGAAATTAC GCATAATCTGGAGGATGCACCTGGCACCGTAGGTTGGTACGCCTGGTCTG TCTTAATCCCTCTCTCCTACCCCACCGACGAAGACCCGACCCGGAACTGG CAGATCATATGTCAGTGGCACGATCAGCCGGACCTGGATGCAGGCCAATC CTGGGACGGTTTTCCTCCCCACAACTCATCCATCGCCCTCTACCTCCTCA ACCACCCGAACCGCACGTCCCTGGCCATGGGCGTTGGCTTCAATCTTCCC AAGGGCACCTGGCAATATGGCCCCGTGGTCATAGAGAAAGGCGAGTGGGT TGACGTTTTGTTTCACATTGGATGGTCAACGGGGGACGACGGCTTCATTC ACACCTTTATCGAGGGAGGGAAGGAGAGAGGGAGGGAAATGCAGGCGCTT ACCCCTCCAGAGGGGGTGAGAGGGAGAACGCTTTTTTATCAGTACACAGA TTACTTGAAACTGGGCTTGTATAGGGAGCCCTCCATCAACTACACCAGCA CTCTCTACCTAGATGAGCTACGTTGCGGCCCAACAAAAGAAAGTGTGGCC TTGCCTCCTCTTTTAGAAGCCGGGGAGAGGGAGGGCGGGGGAAGAGGGAG GAGAGGGAAATTCCGAACACGAGTTTTAGGTGGTTGATATTCACTTGCAT TTCTCCTTTTGGAAAGCGTCGCTGTATGTGCAGTAAGAGTTCCGGTTTGA CTAGCTTCCCGTCATCGGTATCAATATTAGGAATAGCGGTGTACATCTCA GACGAGATTACTCCCTACATGCTTGTGCTGACATTTTCTGATAAAGCGAA CAAACATGTACGCAGGGATCGATCGATCCGTTGCCTTCTTTTTTTTTCCC CCTTTTCGTATACCTCGCCAGTTCTCTCGCTCGACTTTGATGTCTCTGAA GACAACGCGGAAGAGACCCCATCCAAGTAAGCCACGCACAGGGGCAATCT TAGTGTCGCTGCTGCACGACTCGGAACGAAGAGCGGATGTGGGGAGTAGT TACCTTCCGAGCTTGGTCTTTAATCGACCCGTCCCTCGGCCCTCGATCAT CACTCCCGTCATCCTGCCTCCCTCCTCTCCCTTGCCCTCGTCCTCCTCTT CTCGCACACTCATTCCCATGCTTTGAATACGACGAACAGGTGGCCAGTCT TCATGAGCT back to topprotein sequence of jgi.p|Nanoce1779_2|579888 >mRNA_2308-protein ID=mRNA_2308-protein|Name=jgi.p|Nanoce1779_2|579888|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp MPDMDPPVNAIEEQIALHGHALPAQTCKGSFEDGFAGWTSLEGARNESIV LVSTPVRAGKQAARVTVNPGEMTHHGNRAEITHNLEDAPGTVGWYAWSVL IPLSYPTDEDPTRNWQIICQWHDQPDLDAGQSWDGFPPHNSSIALYLLNH PNRTSLAMGVGFNLPKGTWQYGPVVIEKGEWVDVLFHIGWSTGDDGFIHT FIEGGKERGREMQALTPPEGVRGRTLFYQYTDYLKLGLYREPSINYTSTL YLDELRCGPTKESVALPPLLEAGEREGGGRGRRGKFRTRVLGG* back to topmRNA from alignment at scaffold_4:1359704..1362214- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2308 ID=mRNA_2308|Name=jgi.p|Nanoce1779_2|579888|organism=Nannochloropsis oceanica|type=mRNA|length=2511bp|location=Sequence derived from alignment at scaffold_4:1359704..1362214- (Nannochloropsis oceanica) ACGACCGAGCATCCTTCTCATCCAGTATCTGCATTTCCTCCTCCAAGCAA
CGCCTCGGGCCATCTCGCTGCTGCTGCTGATGCTGCTGCTGATGCTGCTG
CTCCAATGCCCGACATGGACCCCCCCGTGAACGCCATCGAGGTAAGGCAA
AAAAAATGTGGAGATGATCTCCATCAGACGGGTATTATACATGCATCTCT
TCATTCTTAATCGCGCCGTTCTGGCGTCTGAATGCTTTCAGCTCTGCTCT
GCTGAACCATTTCGTCCCTTTCCCCCCTCCCTCGCTCCCTCGCTCCCTCC
TCCCCTCCCTCTCGCTCCTTTTGAAGGAACAAATCGCATTGCACGGACAC
GCTCTCCCCGCCCAAACCTGTAAGGGATCCTTTGAGGACGGGTTTGCCGG
ATGGACAAGCTTGGAAGGGGCGCGGAATGAGTCGATTGTGGTGAGTTGGG
GACGGCGAAAGAAGAGGAGTAAGGGATGAGACAGATGGAGAGTGGAGGAA
AGGAGAACGATGATCGGATGTGTCGCTGCAGAAATATAGATGTAAACACT
TATTCTCTTTCCCCTTCCCCCCCTCTCTCCATTTTTTCATCTGTCCTCAG
CTCGTATCCACGCCCGTGCGTGCCGGCAAGCAGGCGGCCCGTGTGACGGT
TAATCCTGGGGAGATGACGCACCATGGAAACAGAGCGGAAATTACGCATA
ATCTGGAGGATGCACCTGGTAGGTAGGGATAGAGGTAGGGATATTAGGGC
AGGGGGGTTGGAAAAGGTACCATAAAAATATCATTTTAATACCATCCTCC
GTCCCTGCATTCCCCTCCTTCTTTTGCAGGCACCGTAGGTTGGTACGCCT
GGTCTGTCTTAATCCCTCTCTCCTACCCCACCGACGAAGACCCGACCCGG
AACTGGCAGATCATATGTCAGTGGCACGATCAGCCGGACCTGGATGCAGG
TTGGGATGGAGGGATGGAGGGACGGAGGGAAAGAAGGAGGGAGGGAGGGG
CTGACGGGCGAGAGCAGTATGTCTCTGACTGGTTTTTCTTCTCTCCTTTC
CCCGAAGGGCATCATGATCCGTTACACGTCAACGCCTTGCACGGCTCTCT
CCCCTCCCTATTCCCCCCATCCCCCCAGGCCAATCCTGGGACGGTTTTCC
TCCCCACAACTCATCCATCGCCCTCTACCTCCTCAACCACCCGAACCGCA
CGTCCCTGGCCATGGGCGTTGGCTTCAATCTTCCCAAGGGCACCTGGCAA
TATGGCCCCGTGGTCATAGAGAAAGTAAGGAGACCGGTCCTCCCTCCCTC
CCTCCCTTCTACCGCGGCGTCGCTCCTATTTTTTCTTCTCCCTTTTCTCA
TGACCTCACTCTCCCTCTTTTCGCCCCCCTCCCCCCTCCTTCCTCCCTCC
TTCCTCCCTTACTCCCTCTTTCCTTGTTTTGGGAATCAGGGCGAGTGGGT
TGACGTTTTGTTTCACATTGGATGGTCAACGGGGGACGACGGCTTCATTC
ACACCTTTATCGAGGGAGGGAAGGAGAGAGGGAGGGAAATGCAGGCGCTT
ACCCCTCCAGAGGGGGTGAGAGGGAGAACGCTTTTTTATCAGTACACAGA
TTACTTGAAACTGGGCTTGTATAGGTGCGTGGAGGGAGGGAGGAAGGGAA
GGAGGGAGGGAGGGAGGGAGGGAGAAAGGTAGAATTGTCCCGTGGTTATT
GCACAGATGAACATGGGGATATACTTATTCCTTTCTCAAATCCAAATTTA
TTCAAACTCATACCATCCGACCTCCCACTATTCTTTCCTCTGTCCCTCCC
TCCCTACTTCCCTGCTCCGTCCTCAGGGAGCCCTCCATCAACTACACCAG
CACTCTCTACCTAGATGAGCTACGTTGCGGCCCAACAAAAGAAAGTGTGG
CCTTGCCTCCTCTTTTAGAAGCCGGGGAGAGGGAGGGCGGGGGAAGAGGG
AGGAGAGGGAAATTCCGAACACGAGTTTTAGGTGGTTGATATTCACTTGC
ATTTCTCCTTTTGGAAAGCGTCGCTGTATGTGCAGTAAGAGTTCCGGTTT
GACTAGCTTCCCGTCATCGGTATCAATATTAGGAATAGCGGTGTACATCT
CAGACGAGATTACTCCCTACATGCTTGTGCTGACATTTTCTGATAAAGCG
AACAAACATGTACGCAGGGATCGATCGATCCGTTGCCTTCTTTTTTTTTC
CCCCTTTTCGTATACCTCGCCAGTTCTCTCGCTCGACTTTGATGTCTCTG
AAGACAACGCGGAAGAGACCCCATCCAAGTAAGCCACGCACAGGGGCAAT
CTTAGTGTCGCTGCTGCACGACTCGGAACGAAGAGCGGATGTGGGGAGTA
GTTACCTTCCGAGCTTGGTCTTTAATCGACCCGTCCCTCGGCCCTCGATC
ATCACTCCCGTCATCCTGCCTCCCTCCTCTCCCTTGCCCTCGTCCTCCTC
TTCTCGCACACTCATTCCCATGCTTTGAATACGACGAACAGGTGGCCAGT
CTTCATGAGCT back to topCoding sequence (CDS) from alignment at scaffold_4:1359704..1362214- >mRNA_2308 ID=mRNA_2308|Name=jgi.p|Nanoce1779_2|579888|organism=Nannochloropsis oceanica|type=CDS|length=6174bp|location=Sequence derived from alignment at scaffold_4:1359704..1362214- (Nannochloropsis oceanica) GGAGCCCTCCATCAACTACACCAGCACTCTCTACCTAGATGAGCTACGTT GCGGCCCAACAAAAGAAAGTGTGGCCTTGCCTCCTCTTTTAGAAGCCGGG GAGAGGGAGGGCGGGGGAAGAGGGAGGAGAGGGAAATTCCGAACACGAGT TTTAGGTGGTTGAGGCGAGTGGGTTGACGTTTTGTTTCACATTGGATGGT CAACGGGGGACGACGGCTTCATTCACACCTTTATCGAGGGAGGGAAGGAG AGAGGGAGGGAAATGCAGGCGCTTACCCCTCCAGAGGGGGTGAGAGGGAG AACGCTTTTTTATCAGTACACAGATTACTTGAAACTGGGCTTGTATAGGC CAATCCTGGGACGGTTTTCCTCCCCACAACTCATCCATCGCCCTCTACCT CCTCAACCACCCGAACCGCACGTCCCTGGCCATGGGCGTTGGCTTCAATC TTCCCAAGGGCACCTGGCAATATGGCCCCGTGGTCATAGAGAAAGCACCG TAGGTTGGTACGCCTGGTCTGTCTTAATCCCTCTCTCCTACCCCACCGAC GAAGACCCGACCCGGAACTGGCAGATCATATGTCAGTGGCACGATCAGCC GGACCTGGATGCAGCTCGTATCCACGCCCGTGCGTGCCGGCAAGCAGGCG GCCCGTGTGACGGTTAATCCTGGGGAGATGACGCACCATGGAAACAGAGC GGAAATTACGCATAATCTGGAGGATGCACCTGGAACAAATCGCATTGCAC GGACACGCTCTCCCCGCCCAAACCTGTAAGGGATCCTTTGAGGACGGGTT TGCCGGATGGACAAGCTTGGAAGGGGCGCGGAATGAGTCGATTGTGATGC CCGACATGGACCCCCCCGTGAACGCCATCGAGGGAGCCCTCCATCAACTA CACCAGCACTCTCTACCTAGATGAGCTACGTTGCGGCCCAACAAAAGAAA GTGTGGCCTTGCCTCCTCTTTTAGAAGCCGGGGAGAGGGAGGGCGGGGGA AGAGGGAGGAGAGGGAAATTCCGAACACGAGTTTTAGGTGGTTGAGGCGA GTGGGTTGACGTTTTGTTTCACATTGGATGGTCAACGGGGGACGACGGCT TCATTCACACCTTTATCGAGGGAGGGAAGGAGAGAGGGAGGGAAATGCAG GCGCTTACCCCTCCAGAGGGGGTGAGAGGGAGAACGCTTTTTTATCAGTA CACAGATTACTTGAAACTGGGCTTGTATAGGCCAATCCTGGGACGGTTTT CCTCCCCACAACTCATCCATCGCCCTCTACCTCCTCAACCACCCGAACCG CACGTCCCTGGCCATGGGCGTTGGCTTCAATCTTCCCAAGGGCACCTGGC AATATGGCCCCGTGGTCATAGAGAAAGCACCGTAGGTTGGTACGCCTGGT CTGTCTTAATCCCTCTCTCCTACCCCACCGACGAAGACCCGACCCGGAAC TGGCAGATCATATGTCAGTGGCACGATCAGCCGGACCTGGATGCAGCTCG TATCCACGCCCGTGCGTGCCGGCAAGCAGGCGGCCCGTGTGACGGTTAAT CCTGGGGAGATGACGCACCATGGAAACAGAGCGGAAATTACGCATAATCT GGAGGATGCACCTGGAACAAATCGCATTGCACGGACACGCTCTCCCCGCC CAAACCTGTAAGGGATCCTTTGAGGACGGGTTTGCCGGATGGACAAGCTT GGAAGGGGCGCGGAATGAGTCGATTGTGATGCCCGACATGGACCCCCCCG TGAACGCCATCGAGGGAGCCCTCCATCAACTACACCAGCACTCTCTACCT AGATGAGCTACGTTGCGGCCCAACAAAAGAAAGTGTGGCCTTGCCTCCTC TTTTAGAAGCCGGGGAGAGGGAGGGCGGGGGAAGAGGGAGGAGAGGGAAA TTCCGAACACGAGTTTTAGGTGGTTGAGGCGAGTGGGTTGACGTTTTGTT TCACATTGGATGGTCAACGGGGGACGACGGCTTCATTCACACCTTTATCG AGGGAGGGAAGGAGAGAGGGAGGGAAATGCAGGCGCTTACCCCTCCAGAG GGGGTGAGAGGGAGAACGCTTTTTTATCAGTACACAGATTACTTGAAACT GGGCTTGTATAGGCCAATCCTGGGACGGTTTTCCTCCCCACAACTCATCC ATCGCCCTCTACCTCCTCAACCACCCGAACCGCACGTCCCTGGCCATGGG CGTTGGCTTCAATCTTCCCAAGGGCACCTGGCAATATGGCCCCGTGGTCA TAGAGAAAGCACCGTAGGTTGGTACGCCTGGTCTGTCTTAATCCCTCTCT CCTACCCCACCGACGAAGACCCGACCCGGAACTGGCAGATCATATGTCAG TGGCACGATCAGCCGGACCTGGATGCAGCTCGTATCCACGCCCGTGCGTG CCGGCAAGCAGGCGGCCCGTGTGACGGTTAATCCTGGGGAGATGACGCAC CATGGAAACAGAGCGGAAATTACGCATAATCTGGAGGATGCACCTGGAAC AAATCGCATTGCACGGACACGCTCTCCCCGCCCAAACCTGTAAGGGATCC TTTGAGGACGGGTTTGCCGGATGGACAAGCTTGGAAGGGGCGCGGAATGA GTCGATTGTGATGCCCGACATGGACCCCCCCGTGAACGCCATCGAGGGAG CCCTCCATCAACTACACCAGCACTCTCTACCTAGATGAGCTACGTTGCGG CCCAACAAAAGAAAGTGTGGCCTTGCCTCCTCTTTTAGAAGCCGGGGAGA GGGAGGGCGGGGGAAGAGGGAGGAGAGGGAAATTCCGAACACGAGTTTTA GGTGGTTGAGGCGAGTGGGTTGACGTTTTGTTTCACATTGGATGGTCAAC GGGGGACGACGGCTTCATTCACACCTTTATCGAGGGAGGGAAGGAGAGAG GGAGGGAAATGCAGGCGCTTACCCCTCCAGAGGGGGTGAGAGGGAGAACG CTTTTTTATCAGTACACAGATTACTTGAAACTGGGCTTGTATAGGCCAAT CCTGGGACGGTTTTCCTCCCCACAACTCATCCATCGCCCTCTACCTCCTC AACCACCCGAACCGCACGTCCCTGGCCATGGGCGTTGGCTTCAATCTTCC CAAGGGCACCTGGCAATATGGCCCCGTGGTCATAGAGAAAGCACCGTAGG TTGGTACGCCTGGTCTGTCTTAATCCCTCTCTCCTACCCCACCGACGAAG ACCCGACCCGGAACTGGCAGATCATATGTCAGTGGCACGATCAGCCGGAC CTGGATGCAGCTCGTATCCACGCCCGTGCGTGCCGGCAAGCAGGCGGCCC GTGTGACGGTTAATCCTGGGGAGATGACGCACCATGGAAACAGAGCGGAA ATTACGCATAATCTGGAGGATGCACCTGGAACAAATCGCATTGCACGGAC ACGCTCTCCCCGCCCAAACCTGTAAGGGATCCTTTGAGGACGGGTTTGCC GGATGGACAAGCTTGGAAGGGGCGCGGAATGAGTCGATTGTGATGCCCGA CATGGACCCCCCCGTGAACGCCATCGAGGGAGCCCTCCATCAACTACACC AGCACTCTCTACCTAGATGAGCTACGTTGCGGCCCAACAAAAGAAAGTGT GGCCTTGCCTCCTCTTTTAGAAGCCGGGGAGAGGGAGGGCGGGGGAAGAG GGAGGAGAGGGAAATTCCGAACACGAGTTTTAGGTGGTTGAGGCGAGTGG GTTGACGTTTTGTTTCACATTGGATGGTCAACGGGGGACGACGGCTTCAT TCACACCTTTATCGAGGGAGGGAAGGAGAGAGGGAGGGAAATGCAGGCGC TTACCCCTCCAGAGGGGGTGAGAGGGAGAACGCTTTTTTATCAGTACACA GATTACTTGAAACTGGGCTTGTATAGGCCAATCCTGGGACGGTTTTCCTC CCCACAACTCATCCATCGCCCTCTACCTCCTCAACCACCCGAACCGCACG TCCCTGGCCATGGGCGTTGGCTTCAATCTTCCCAAGGGCACCTGGCAATA TGGCCCCGTGGTCATAGAGAAAGCACCGTAGGTTGGTACGCCTGGTCTGT CTTAATCCCTCTCTCCTACCCCACCGACGAAGACCCGACCCGGAACTGGC AGATCATATGTCAGTGGCACGATCAGCCGGACCTGGATGCAGCTCGTATC CACGCCCGTGCGTGCCGGCAAGCAGGCGGCCCGTGTGACGGTTAATCCTG GGGAGATGACGCACCATGGAAACAGAGCGGAAATTACGCATAATCTGGAG GATGCACCTGGAACAAATCGCATTGCACGGACACGCTCTCCCCGCCCAAA CCTGTAAGGGATCCTTTGAGGACGGGTTTGCCGGATGGACAAGCTTGGAA GGGGCGCGGAATGAGTCGATTGTGATGCCCGACATGGACCCCCCCGTGAA CGCCATCGAGGGAGCCCTCCATCAACTACACCAGCACTCTCTACCTAGAT GAGCTACGTTGCGGCCCAACAAAAGAAAGTGTGGCCTTGCCTCCTCTTTT AGAAGCCGGGGAGAGGGAGGGCGGGGGAAGAGGGAGGAGAGGGAAATTCC GAACACGAGTTTTAGGTGGTTGAGGCGAGTGGGTTGACGTTTTGTTTCAC ATTGGATGGTCAACGGGGGACGACGGCTTCATTCACACCTTTATCGAGGG AGGGAAGGAGAGAGGGAGGGAAATGCAGGCGCTTACCCCTCCAGAGGGGG TGAGAGGGAGAACGCTTTTTTATCAGTACACAGATTACTTGAAACTGGGC TTGTATAGGCCAATCCTGGGACGGTTTTCCTCCCCACAACTCATCCATCG CCCTCTACCTCCTCAACCACCCGAACCGCACGTCCCTGGCCATGGGCGTT GGCTTCAATCTTCCCAAGGGCACCTGGCAATATGGCCCCGTGGTCATAGA GAAAGCACCGTAGGTTGGTACGCCTGGTCTGTCTTAATCCCTCTCTCCTA CCCCACCGACGAAGACCCGACCCGGAACTGGCAGATCATATGTCAGTGGC ACGATCAGCCGGACCTGGATGCAGCTCGTATCCACGCCCGTGCGTGCCGG CAAGCAGGCGGCCCGTGTGACGGTTAATCCTGGGGAGATGACGCACCATG GAAACAGAGCGGAAATTACGCATAATCTGGAGGATGCACCTGGAACAAAT CGCATTGCACGGACACGCTCTCCCCGCCCAAACCTGTAAGGGATCCTTTG AGGACGGGTTTGCCGGATGGACAAGCTTGGAAGGGGCGCGGAATGAGTCG ATTGTGATGCCCGACATGGACCCCCCCGTGAACGCCATCGAGGGAGCCCT CCATCAACTACACCAGCACTCTCTACCTAGATGAGCTACGTTGCGGCCCA ACAAAAGAAAGTGTGGCCTTGCCTCCTCTTTTAGAAGCCGGGGAGAGGGA GGGCGGGGGAAGAGGGAGGAGAGGGAAATTCCGAACACGAGTTTTAGGTG GTTGAGGCGAGTGGGTTGACGTTTTGTTTCACATTGGATGGTCAACGGGG GACGACGGCTTCATTCACACCTTTATCGAGGGAGGGAAGGAGAGAGGGAG GGAAATGCAGGCGCTTACCCCTCCAGAGGGGGTGAGAGGGAGAACGCTTT TTTATCAGTACACAGATTACTTGAAACTGGGCTTGTATAGGCCAATCCTG GGACGGTTTTCCTCCCCACAACTCATCCATCGCCCTCTACCTCCTCAACC ACCCGAACCGCACGTCCCTGGCCATGGGCGTTGGCTTCAATCTTCCCAAG GGCACCTGGCAATATGGCCCCGTGGTCATAGAGAAAGCACCGTAGGTTGG TACGCCTGGTCTGTCTTAATCCCTCTCTCCTACCCCACCGACGAAGACCC GACCCGGAACTGGCAGATCATATGTCAGTGGCACGATCAGCCGGACCTGG ATGCAGCTCGTATCCACGCCCGTGCGTGCCGGCAAGCAGGCGGCCCGTGT GACGGTTAATCCTGGGGAGATGACGCACCATGGAAACAGAGCGGAAATTA CGCATAATCTGGAGGATGCACCTGGAACAAATCGCATTGCACGGACACGC TCTCCCCGCCCAAACCTGTAAGGGATCCTTTGAGGACGGGTTTGCCGGAT GGACAAGCTTGGAAGGGGCGCGGAATGAGTCGATTGTGATGCCCGACATG GACCCCCCCGTGAACGCCATCGAG back to top
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