jgi.p|Nanoce1779_2|668894, mRNA_2224 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668894
Unique Name	mRNA_2224
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2263
Alignment location	scaffold_4:1094373..1096635 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	668980
Track	FilteredModels2
ProteinId	668894

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1094373..1096635 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668894	gene_2224	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668894	mRNA_2224-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2224	CDS_2224	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1094373..1096635-
coding sequence from alignment at scaffold_4:1094373..1096635-

mRNA sequence

>mRNA_2224 ID=mRNA_2224|Name=jgi.p|Nanoce1779_2|668894|organism=Nannochloropsis oceanica|type=mRNA|length=2263bp
ATGGCAACCCTCGACGAGCTCCTCCTCCACCAGCCGCAGGCGCAAGAAGG
ACAAATCGGCTCTAATGGCAACGATGGGATATTTATAAAAAATTTGTTTA
AGAGCTTAATTCAAGGCACGCGGGCTTCCAATGCGATTCCTTCTGGGGGT
GTTGGAGAAGAGGGACGAGGCGAGGCTTCTGAATTCGCCTACCAAGCAGC
TATCTCCCCAGTCTTTGCGGAGAAAGCCAATGAAGCCAGTGAAACAGTGC
TTACCCTTCTGAAAAAACTGGTGCGCCACATGCGGAAAGCGGTGGGCGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAATTGACGAAGATGATGATGA
CCTGTTATTGCCAGGCTTAGAGGACGTGGAGGACCCGGCTGCTTTTGAAG
GCTTGGCAGACATCATGGAAGATCTACTTGATAATGTGGAAGGTTACTTG
ATGAACAAGGGGAAGAAAGAAGTGAAGAAAAGCGAGAGTAGGGGAGGGGC
AACGGCGACGATGTCGAATGAGTCGTGGGAGAGGCTACGCAACATGGCGG
GAGCTGCACGACAAACAGCAATGGCAAGTCGATACAAGATAATGCTCTCT
CAAACTTTAGACATCCCTAAACCGCAAGAGGCGTTTAAATCCGAAATCGA
CAATCGGAGAGAAACTTGTTTTCGACCTCGGTGCTGGAGGGAGGGCGGGA
GGGAGGAAGGGCAGGGACTGGAGACAGAAAGCCCCCATCTGTTCGAGACG
GAGATCCGTAATTTTTCGTACATGCCGTGGCAGCTTGAGTTGCCGGGGGA
GGAGGAGGTCAAGCTGCAGAAACCGTTGGCGCTGGAGCAGAGTGAGGCTG
TAACGCTCGTGGACACGGTGGAGGGGCTGAAAGAAGCATTGCAGGTCGTG
AGGGAGGAGTTAGAGGAGGAAGGGAACGGGGAAGGGGGGGGGGAGAAGAT
GATTGCGGTTGATCTAGAAGCGCATAGCATGAGGTCTTTTCAAGGTTTGG
TCTGTTTGATGCAGCTCTCGACGAGGAAGAGAGACTTTTTGATTGATACC
CTCCAGGTCGAGGTACGGAGGGCGATGGGTCCCTTGTTGCTGGACTTGTT
CACGGACCATACGGTGGTAAAGGTGTTTCATGGCGCCGACAGCGATATCA
AGTGGCTGCAGCGTGACTTTGGTCTGTATGTTGTGAATCTGTTTGACACC
TTCCTCGCGGCCCAGGCGCTCGGTTTCCCTTCCAAGTCGCTTGCTTATTT
GCTCCATCATTACACGGGCGTCAAGGCCGATAAGCAATATCAGTTGGCTG
ACTGGCGCATAAGACCCCTCCCAGAGATCATGCAGCGGTATGCTCGGGAA
GACACGCATTATTTACTCTATATATTTAATTGCTTGCGGAGGGAGCTAGG
GAGGGAGGGAGGGCGCGTGAGGGGTGTATGGGATGGTTCCAGGGAGGTAT
GTCTGTTGAGGTATAGAAAAGAGAAGTTTGATCCGGAGGGGTACTTGAAG
CTGATGGCGGGAGGGATGGGGGGATGGGAGGGAGGGAGGGAGGGCCCGGA
GATGAAGTGTTTAGAGAGGCTGTGGGAGTGGAGGGATGGGGTGGCGAGGG
AGGAGGATGAGAGCTCCGGGTATGTTTGCTCGGACCGACTTTTGTGTAGG
ATTGCGAAGATGAGGCCTCGGACTTTTGGGGGGTTGACTGAGTGTGGAGG
GGCGGGGGGGTCGTTGCCGATGCTGGTGACGAAGAGAGCGGAGGAAGTCT
TGAAGGTCATAGGGGGAGGAGGAGGAGGAGGAGGGGGGTGACGGAGGAGG
AGGGGCAATAGGAGGAAAAGGGGCATCTAATCACACGTTTCCAACTTTTC
CGCCTCTGCCAGTCTCTTCAACGAGTGTGTTTGATCTTCATTTGCGGCGG
CAAGAGCCAAAGGATGCCTCCCTCCCCTCCTCCCTCCCTTCCTCCTTCCC
TCCCGTCCTCCCCACGGAGGAGTTGTACCTGACAGCAGGATGGACCTCGC
CTTTGATCCCTTCCTCCCTCGACACGATACCATCGCTTGCTGTTCCCCCC
ACCGTCATTTCTACCACCGCCAACACTACAGCAATCATTGACCCTTCCCG
GCAGGGAGGGAGGGGGGGAGGGATGGCCGTAGTGCCGGCCCAGGGTAACG
CAGGGATGGAGACATATCGCTCATTTTCTCATTCCTTGGAATTATCCTCC
TCCCCAACCACACGTGCGACTGAAAATAAAGCAGCCGTGATGATGATGAT
GTCGTCTGTGGAG

protein sequence of jgi.p|Nanoce1779_2|668894

>mRNA_2224-protein ID=mRNA_2224-protein|Name=jgi.p|Nanoce1779_2|668894|organism=Nannochloropsis oceanica|type=polypeptide|length=597bp
MATLDELLLHQPQAQEGQIGSNGNDGIFIKNLFKSLIQGTRASNAIPSGG
VGEEGRGEASEFAYQAAISPVFAEKANEASETVLTLLKKLVRHMRKAVGE
EEEEEEEEEEIDEDDDDLLLPGLEDVEDPAAFEGLADIMEDLLDNVEGYL
MNKGKKEVKKSESRGGATATMSNESWERLRNMAGAARQTAMASRYKIMLS
QTLDIPKPQEAFKSEIDNRRETCFRPRCWREGGREEGQGLETESPHLFET
EIRNFSYMPWQLELPGEEEVKLQKPLALEQSEAVTLVDTVEGLKEALQVV
REELEEEGNGEGGGEKMIAVDLEAHSMRSFQGLVCLMQLSTRKRDFLIDT
LQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDT
FLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYARE
DTHYLLYIFNCLRRELGREGGRVRGVWDGSREVCLLRYRKEKFDPEGYLK
LMAGGMGGWEGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCR
IAKMRPRTFGGLTECGGAGGSLPMLVTKRAEEVLKVIGGGGGGGGG*

mRNA from alignment at scaffold_4:1094373..1096635-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2224 ID=mRNA_2224|Name=jgi.p|Nanoce1779_2|668894|organism=Nannochloropsis oceanica|type=mRNA|length=2263bp|location=Sequence derived from alignment at scaffold_4:1094373..1096635- (Nannochloropsis oceanica)
ATGGCAACCCTCGACGAGCTCCTCCTCCACCAGCCGCAGGCGCAAGAAGG
ACAAATCGGCTCTAATGGCAACGATGGGATATTTATAAAAAATTTGTTTA
AGAGCTTAATTCAAGGCACGCGGGCTTCCAATGCGATTCCTTCTGGGGGT
GTTGGAGAAGAGGGACGAGGCGAGGCTTCTGAATTCGCCTACCAAGCAGC
TATCTCCCCAGTCTTTGCGGAGAAAGCCAATGAAGCCAGTGAAACAGTGC
TTACCCTTCTGAAAAAACTGGTGCGCCACATGCGGAAAGCGGTGGGCGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAATTGACGAAGATGATGATGA
CCTGTTATTGCCAGGCTTAGAGGACGTGGAGGACCCGGCTGCTTTTGAAG
GCTTGGCAGACATCATGGAAGATCTACTTGATAATGTGGAAGGTTACTTG
ATGAACAAGGGGAAGAAAGAAGTGAAGAAAAGCGAGAGTAGGGGAGGGGC
AACGGCGACGATGTCGAATGAGTCGTGGGAGAGGCTACGCAACATGGCGG
GAGCTGCACGACAAACAGCAATGGCAAGTCGATACAAGATAATGCTCTCT
CAAACTTTAGACATCCCTAAACCGCAAGAGGCGTTTAAATCCGAAATCGA
CAATCGGAGAGAAACTTGTTTTCGACCTCGGTGCTGGAGGGAGGGCGGGA
GGGAGGAAGGGCAGGGACTGGAGACAGAAAGCCCCCATCTGTTCGAGACG
GAGATCCGTAATTTTTCGTACATGCCGTGGCAGCTTGAGTTGCCGGGGGA
GGAGGAGGTCAAGCTGCAGAAACCGTTGGCGCTGGAGCAGAGTGAGGCTG
TAACGCTCGTGGACACGGTGGAGGGGCTGAAAGAAGCATTGCAGGTCGTG
AGGGAGGAGTTAGAGGAGGAAGGGAACGGGGAAGGGGGGGGGGAGAAGAT
GATTGCGGTTGATCTAGAAGCGCATAGCATGAGGTCTTTTCAAGGTTTGG
TCTGTTTGATGCAGCTCTCGACGAGGAAGAGAGACTTTTTGATTGATACC
CTCCAGGTCGAGGTACGGAGGGCGATGGGTCCCTTGTTGCTGGACTTGTT
CACGGACCATACGGTGGTAAAGGTGTTTCATGGCGCCGACAGCGATATCA
AGTGGCTGCAGCGTGACTTTGGTCTGTATGTTGTGAATCTGTTTGACACC
TTCCTCGCGGCCCAGGCGCTCGGTTTCCCTTCCAAGTCGCTTGCTTATTT
GCTCCATCATTACACGGGCGTCAAGGCCGATAAGCAATATCAGTTGGCTG
ACTGGCGCATAAGACCCCTCCCAGAGATCATGCAGCGGTATGCTCGGGAA
GACACGCATTATTTACTCTATATATTTAATTGCTTGCGGAGGGAGCTAGG
GAGGGAGGGAGGGCGCGTGAGGGGTGTATGGGATGGTTCCAGGGAGGTAT
GTCTGTTGAGGTATAGAAAAGAGAAGTTTGATCCGGAGGGGTACTTGAAG
CTGATGGCGGGAGGGATGGGGGGATGGGAGGGAGGGAGGGAGGGCCCGGA
GATGAAGTGTTTAGAGAGGCTGTGGGAGTGGAGGGATGGGGTGGCGAGGG
AGGAGGATGAGAGCTCCGGGTATGTTTGCTCGGACCGACTTTTGTGTAGG
ATTGCGAAGATGAGGCCTCGGACTTTTGGGGGGTTGACTGAGTGTGGAGG
GGCGGGGGGGTCGTTGCCGATGCTGGTGACGAAGAGAGCGGAGGAAGTCT
TGAAGGTCATAGGGGGAGGAGGAGGAGGAGGAGGGGGGTGACGGAGGAGG
AGGGGCAATAGGAGGAAAAGGGGCATCTAATCACACGTTTCCAACTTTTC
CGCCTCTGCCAGTCTCTTCAACGAGTGTGTTTGATCTTCATTTGCGGCGG
CAAGAGCCAAAGGATGCCTCCCTCCCCTCCTCCCTCCCTTCCTCCTTCCC
TCCCGTCCTCCCCACGGAGGAGTTGTACCTGACAGCAGGATGGACCTCGC
CTTTGATCCCTTCCTCCCTCGACACGATACCATCGCTTGCTGTTCCCCCC
ACCGTCATTTCTACCACCGCCAACACTACAGCAATCATTGACCCTTCCCG
GCAGGGAGGGAGGGGGGGAGGGATGGCCGTAGTGCCGGCCCAGGGTAACG
CAGGGATGGAGACATATCGCTCATTTTCTCATTCCTTGGAATTATCCTCC
TCCCCAACCACACGTGCGACTGAAAATAAAGCAGCCGTGATGATGATGAT
GTCGTCTGTGGAG

Coding sequence (CDS) from alignment at scaffold_4:1094373..1096635-

>mRNA_2224 ID=mRNA_2224|Name=jgi.p|Nanoce1779_2|668894|organism=Nannochloropsis oceanica|type=CDS|length=1791bp|location=Sequence derived from alignment at scaffold_4:1094373..1096635- (Nannochloropsis oceanica)
ATGGCAACCCTCGACGAGCTCCTCCTCCACCAGCCGCAGGCGCAAGAAGG
ACAAATCGGCTCTAATGGCAACGATGGGATATTTATAAAAAATTTGTTTA
AGAGCTTAATTCAAGGCACGCGGGCTTCCAATGCGATTCCTTCTGGGGGT
GTTGGAGAAGAGGGACGAGGCGAGGCTTCTGAATTCGCCTACCAAGCAGC
TATCTCCCCAGTCTTTGCGGAGAAAGCCAATGAAGCCAGTGAAACAGTGC
TTACCCTTCTGAAAAAACTGGTGCGCCACATGCGGAAAGCGGTGGGCGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAATTGACGAAGATGATGATGA
CCTGTTATTGCCAGGCTTAGAGGACGTGGAGGACCCGGCTGCTTTTGAAG
GCTTGGCAGACATCATGGAAGATCTACTTGATAATGTGGAAGGTTACTTG
ATGAACAAGGGGAAGAAAGAAGTGAAGAAAAGCGAGAGTAGGGGAGGGGC
AACGGCGACGATGTCGAATGAGTCGTGGGAGAGGCTACGCAACATGGCGG
GAGCTGCACGACAAACAGCAATGGCAAGTCGATACAAGATAATGCTCTCT
CAAACTTTAGACATCCCTAAACCGCAAGAGGCGTTTAAATCCGAAATCGA
CAATCGGAGAGAAACTTGTTTTCGACCTCGGTGCTGGAGGGAGGGCGGGA
GGGAGGAAGGGCAGGGACTGGAGACAGAAAGCCCCCATCTGTTCGAGACG
GAGATCCGTAATTTTTCGTACATGCCGTGGCAGCTTGAGTTGCCGGGGGA
GGAGGAGGTCAAGCTGCAGAAACCGTTGGCGCTGGAGCAGAGTGAGGCTG
TAACGCTCGTGGACACGGTGGAGGGGCTGAAAGAAGCATTGCAGGTCGTG
AGGGAGGAGTTAGAGGAGGAAGGGAACGGGGAAGGGGGGGGGGAGAAGAT
GATTGCGGTTGATCTAGAAGCGCATAGCATGAGGTCTTTTCAAGGTTTGG
TCTGTTTGATGCAGCTCTCGACGAGGAAGAGAGACTTTTTGATTGATACC
CTCCAGGTCGAGGTACGGAGGGCGATGGGTCCCTTGTTGCTGGACTTGTT
CACGGACCATACGGTGGTAAAGGTGTTTCATGGCGCCGACAGCGATATCA
AGTGGCTGCAGCGTGACTTTGGTCTGTATGTTGTGAATCTGTTTGACACC
TTCCTCGCGGCCCAGGCGCTCGGTTTCCCTTCCAAGTCGCTTGCTTATTT
GCTCCATCATTACACGGGCGTCAAGGCCGATAAGCAATATCAGTTGGCTG
ACTGGCGCATAAGACCCCTCCCAGAGATCATGCAGCGGTATGCTCGGGAA
GACACGCATTATTTACTCTATATATTTAATTGCTTGCGGAGGGAGCTAGG
GAGGGAGGGAGGGCGCGTGAGGGGTGTATGGGATGGTTCCAGGGAGGTAT
GTCTGTTGAGGTATAGAAAAGAGAAGTTTGATCCGGAGGGGTACTTGAAG
CTGATGGCGGGAGGGATGGGGGGATGGGAGGGAGGGAGGGAGGGCCCGGA
GATGAAGTGTTTAGAGAGGCTGTGGGAGTGGAGGGATGGGGTGGCGAGGG
AGGAGGATGAGAGCTCCGGGTATGTTTGCTCGGACCGACTTTTGTGTAGG
ATTGCGAAGATGAGGCCTCGGACTTTTGGGGGGTTGACTGAGTGTGGAGG
GGCGGGGGGGTCGTTGCCGATGCTGGTGACGAAGAGAGCGGAGGAAGTCT
TGAAGGTCATAGGGGGAGGAGGAGGAGGAGGAGGGGGGTGA

Synonyms

Publications