jgi.p|Nanoce1779_2|668894, gene_2224 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668894
Unique Namegene_2224
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:1094373..1096635 -

Link to JBrowse

Properties
Property NameValue
TranscriptId668980
ProteinId668894
Product nameRibonuclease H-like domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1094373..1096635 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00001753'-5'-exoribonuclease activity
GO:00045345'-3' exoribonuclease activity
GO:0000166nucleotide binding
GO:0003824catalytic activity
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0044237cellular metabolic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL058ncniL058Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668894mRNA_2224-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668894mRNA_2224Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|668894

>mRNA_2224-protein ID=mRNA_2224-protein|Name=jgi.p|Nanoce1779_2|668894|organism=Nannochloropsis oceanica|type=polypeptide|length=597bp
MATLDELLLHQPQAQEGQIGSNGNDGIFIKNLFKSLIQGTRASNAIPSGG
VGEEGRGEASEFAYQAAISPVFAEKANEASETVLTLLKKLVRHMRKAVGE
EEEEEEEEEEIDEDDDDLLLPGLEDVEDPAAFEGLADIMEDLLDNVEGYL
MNKGKKEVKKSESRGGATATMSNESWERLRNMAGAARQTAMASRYKIMLS
QTLDIPKPQEAFKSEIDNRRETCFRPRCWREGGREEGQGLETESPHLFET
EIRNFSYMPWQLELPGEEEVKLQKPLALEQSEAVTLVDTVEGLKEALQVV
REELEEEGNGEGGGEKMIAVDLEAHSMRSFQGLVCLMQLSTRKRDFLIDT
LQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDT
FLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYARE
DTHYLLYIFNCLRRELGREGGRVRGVWDGSREVCLLRYRKEKFDPEGYLK
LMAGGMGGWEGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCR
IAKMRPRTFGGLTECGGAGGSLPMLVTKRAEEVLKVIGGGGGGGGG*
back to top
Synonyms
Publications