jgi.p|Nanoce1779_2|579282, mRNA_2158 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579282
Unique NamemRNA_2158
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1484
Alignment locationscaffold_4:925479..926962 -

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Properties
Property NameValue
TranscriptId579368
TrackFilteredModels2
ProteinId579282
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:925479..926962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579282gene_2158Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579282mRNA_2158-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2158CDS_2158Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2158 ID=mRNA_2158|Name=jgi.p|Nanoce1779_2|579282|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp
AACAAAAGCAACTTGTATCGTGCGCGAAAGCCTCCTCTGACTGCCAGTAA
ACCCGACACGATACACTGCCCACAGGCCCTTCGTCGTTGCAAAATCAGAG
CTCGGAATTCCCGGTCTAATTCACAGCCTAACCCTGCGTTTCCCAGGAGA
TAAAAACTCGACATAAGTACCGCAACCACAAGTACCCCTGCATCCCCACC
TCGACGGAAGCATCATCATCGCTAGCCTCCCGTGCGCAGACCAGTCACGC
CCCGAGTGTCCCTGCATCCGCCCAGCTCAACGCAACCATGGCAGTCGCAT
GGACATGGTCCAATATCCTGTGGCTGTCCGCCCTAGTGACGGCCACCCTC
CAGTTCCTGACTTTCCTCGTCGCTTACTTGCTGCAATTTGACAAGTTGAC
GGACATCTCGGGCGCCTCGAACTTCGTCCTGCTAGGCTGGTTGTCCTATG
CCTTGGGAGCAAACCACTACCGACGCCAGATTATAAATACCCTTCTCCTT
ACGATATGGGGTGTCCGGCTAGGGTCCTATCTATTGCTGCGAGTGGTTCG
GCGTGGGCACGATTCCCGGTTTGATGAAATGAGGGCCAGCTTCGCACGAT
TTGGTTCCTTCTTTGTTTTTCAAGCGTTTTGGGTCTTCCTGGTGACGTTG
CCTATCCTTTTTTGTAATGCCACGCGGCATGATGTACATATAGGGGCGCA
AGACTATGTGGGGTGGATATTGTGGAGTGTCGGATTTCTCGTTGAAATTT
GGGCTGATCAAAGCAAAGACGCTTTCAACGAACAACGTCGTTCTTCTACC
TCGGCTTCATGTTCCCGCGGCATCATAACCACAGGATGTTGGTCCTGGTC
ACGGCATCCGAATTATTGGGGTGAAATCACTCTATGGCTGGGGCTCTTCC
TATCCTGCTCCTCCTCCTTCGACGACCCCAACAACCTGCCAGGCGCCTTT
CTTGCAGGCCTTCTCAGCCCCGTTTTCACTTTTGTCATTCTCATGTTCTT
GTCTGGATGTCCTTTGGCCGAGCGAAAGTACAACGAGCGGCATGGTTCCG
AAGCGTGGTACTTGGCATATCGCGCGCAGACCTCCCCCCTCATCCCTCTC
CCTCCCTACCTCTATCGCTCCCTTCCTACTTGGGTGAAGAGTTATTTGCT
GTTTGACCTAGAAATGTACAAGAATGGGTTGCCTCCCTCGACTATAGCAC
CTACTGGGAAGGGGAAAAGCGAGGGAGAGGTTTTGAGAGGGAGTCCGAAC
AAAACGACGAACCTGATAGGGGGGGCAAAGGGCCGTCCTGGAGTGTAGAT
ATGGCGGCGCCTGCAAGGTGAATGCACACTGCAGGTACAGCAACTCTTGT
GGGGAAAAATCAATGTACATAAATATTTTATTTTTTTCATAAATATACTT
ATTAATACGTGTATAAATATGATCACAAATGACAATCAAATCGACTTTTT
TCCCTCGGCAACGCAACCACACGTACAATCAATC
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protein sequence of jgi.p|Nanoce1779_2|579282

>mRNA_2158-protein ID=mRNA_2158-protein|Name=jgi.p|Nanoce1779_2|579282|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MAVAWTWSNILWLSALVTATLQFLTFLVAYLLQFDKLTDISGASNFVLLG
WLSYALGANHYRRQIINTLLLTIWGVRLGSYLLLRVVRRGHDSRFDEMRA
SFARFGSFFVFQAFWVFLVTLPILFCNATRHDVHIGAQDYVGWILWSVGF
LVEIWADQSKDAFNEQRRSSTSASCSRGIITTGCWSWSRHPNYWGEITLW
LGLFLSCSSSFDDPNNLPGAFLAGLLSPVFTFVILMFLSGCPLAERKYNE
RHGSEAWYLAYRAQTSPLIPLPPYLYRSLPTWVKSYLLFDLEMYKNGLPP
STIAPTGKGKSEGEVLRGSPNKTTNLIGGAKGRPGV*
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mRNA from alignment at scaffold_4:925479..926962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2158 ID=mRNA_2158|Name=jgi.p|Nanoce1779_2|579282|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp|location=Sequence derived from alignment at scaffold_4:925479..926962- (Nannochloropsis oceanica)
AACAAAAGCAACTTGTATCGTGCGCGAAAGCCTCCTCTGACTGCCAGTAA
ACCCGACACGATACACTGCCCACAGGCCCTTCGTCGTTGCAAAATCAGAG
CTCGGAATTCCCGGTCTAATTCACAGCCTAACCCTGCGTTTCCCAGGAGA
TAAAAACTCGACATAAGTACCGCAACCACAAGTACCCCTGCATCCCCACC
TCGACGGAAGCATCATCATCGCTAGCCTCCCGTGCGCAGACCAGTCACGC
CCCGAGTGTCCCTGCATCCGCCCAGCTCAACGCAACCATGGCAGTCGCAT
GGACATGGTCCAATATCCTGTGGCTGTCCGCCCTAGTGACGGCCACCCTC
CAGTTCCTGACTTTCCTCGTCGCTTACTTGCTGCAATTTGACAAGTTGAC
GGACATCTCGGGCGCCTCGAACTTCGTCCTGCTAGGCTGGTTGTCCTATG
CCTTGGGAGCAAACCACTACCGACGCCAGATTATAAATACCCTTCTCCTT
ACGATATGGGGTGTCCGGCTAGGGTCCTATCTATTGCTGCGAGTGGTTCG
GCGTGGGCACGATTCCCGGTTTGATGAAATGAGGGCCAGCTTCGCACGAT
TTGGTTCCTTCTTTGTTTTTCAAGCGTTTTGGGTCTTCCTGGTGACGTTG
CCTATCCTTTTTTGTAATGCCACGCGGCATGATGTACATATAGGGGCGCA
AGACTATGTGGGGTGGATATTGTGGAGTGTCGGATTTCTCGTTGAAATTT
GGGCTGATCAAAGCAAAGACGCTTTCAACGAACAACGTCGTTCTTCTACC
TCGGCTTCATGTTCCCGCGGCATCATAACCACAGGATGTTGGTCCTGGTC
ACGGCATCCGAATTATTGGGGTGAAATCACTCTATGGCTGGGGCTCTTCC
TATCCTGCTCCTCCTCCTTCGACGACCCCAACAACCTGCCAGGCGCCTTT
CTTGCAGGCCTTCTCAGCCCCGTTTTCACTTTTGTCATTCTCATGTTCTT
GTCTGGATGTCCTTTGGCCGAGCGAAAGTACAACGAGCGGCATGGTTCCG
AAGCGTGGTACTTGGCATATCGCGCGCAGACCTCCCCCCTCATCCCTCTC
CCTCCCTACCTCTATCGCTCCCTTCCTACTTGGGTGAAGAGTTATTTGCT
GTTTGACCTAGAAATGTACAAGAATGGGTTGCCTCCCTCGACTATAGCAC
CTACTGGGAAGGGGAAAAGCGAGGGAGAGGTTTTGAGAGGGAGTCCGAAC
AAAACGACGAACCTGATAGGGGGGGCAAAGGGCCGTCCTGGAGTGTAGAT
ATGGCGGCGCCTGCAAGGTGAATGCACACTGCAGGTACAGCAACTCTTGT
GGGGAAAAATCAATGTACATAAATATTTTATTTTTTTCATAAATATACTT
ATTAATACGTGTATAAATATGATCACAAATGACAATCAAATCGACTTTTT
TCCCTCGGCAACGCAACCACACGTACAATCAATC
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Coding sequence (CDS) from alignment at scaffold_4:925479..926962-

>mRNA_2158 ID=mRNA_2158|Name=jgi.p|Nanoce1779_2|579282|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_4:925479..926962- (Nannochloropsis oceanica)
ATGGCAGTCGCATGGACATGGTCCAATATCCTGTGGCTGTCCGCCCTAGT
GACGGCCACCCTCCAGTTCCTGACTTTCCTCGTCGCTTACTTGCTGCAAT
TTGACAAGTTGACGGACATCTCGGGCGCCTCGAACTTCGTCCTGCTAGGC
TGGTTGTCCTATGCCTTGGGAGCAAACCACTACCGACGCCAGATTATAAA
TACCCTTCTCCTTACGATATGGGGTGTCCGGCTAGGGTCCTATCTATTGC
TGCGAGTGGTTCGGCGTGGGCACGATTCCCGGTTTGATGAAATGAGGGCC
AGCTTCGCACGATTTGGTTCCTTCTTTGTTTTTCAAGCGTTTTGGGTCTT
CCTGGTGACGTTGCCTATCCTTTTTTGTAATGCCACGCGGCATGATGTAC
ATATAGGGGCGCAAGACTATGTGGGGTGGATATTGTGGAGTGTCGGATTT
CTCGTTGAAATTTGGGCTGATCAAAGCAAAGACGCTTTCAACGAACAACG
TCGTTCTTCTACCTCGGCTTCATGTTCCCGCGGCATCATAACCACAGGAT
GTTGGTCCTGGTCACGGCATCCGAATTATTGGGGTGAAATCACTCTATGG
CTGGGGCTCTTCCTATCCTGCTCCTCCTCCTTCGACGACCCCAACAACCT
GCCAGGCGCCTTTCTTGCAGGCCTTCTCAGCCCCGTTTTCACTTTTGTCA
TTCTCATGTTCTTGTCTGGATGTCCTTTGGCCGAGCGAAAGTACAACGAG
CGGCATGGTTCCGAAGCGTGGTACTTGGCATATCGCGCGCAGACCTCCCC
CCTCATCCCTCTCCCTCCCTACCTCTATCGCTCCCTTCCTACTTGGGTGA
AGAGTTATTTGCTGTTTGACCTAGAAATGTACAAGAATGGGTTGCCTCCC
TCGACTATAGCACCTACTGGGAAGGGGAAAAGCGAGGGAGAGGTTTTGAG
AGGGAGTCCGAACAAAACGACGAACCTGATAGGGGGGGCAAAGGGCCGTC
CTGGAGTGTAG
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Synonyms
Publications