jgi.p|Nanoce1779_2|579282, gene_2158 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579282
Unique Namegene_2158
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:925479..926962 -

Link to JBrowse

Properties
Property NameValue
TranscriptId579368
ProteinId579282
Product nameProtein of unknown function (DUF1295)-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:925479..926962 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL058ncniL058Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03750NO04G03750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579282mRNA_2158-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579282mRNA_2158Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|579282

>mRNA_2158-protein ID=mRNA_2158-protein|Name=jgi.p|Nanoce1779_2|579282|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MAVAWTWSNILWLSALVTATLQFLTFLVAYLLQFDKLTDISGASNFVLLG
WLSYALGANHYRRQIINTLLLTIWGVRLGSYLLLRVVRRGHDSRFDEMRA
SFARFGSFFVFQAFWVFLVTLPILFCNATRHDVHIGAQDYVGWILWSVGF
LVEIWADQSKDAFNEQRRSSTSASCSRGIITTGCWSWSRHPNYWGEITLW
LGLFLSCSSSFDDPNNLPGAFLAGLLSPVFTFVILMFLSGCPLAERKYNE
RHGSEAWYLAYRAQTSPLIPLPPYLYRSLPTWVKSYLLFDLEMYKNGLPP
STIAPTGKGKSEGEVLRGSPNKTTNLIGGAKGRPGV*
back to top
Synonyms
Publications