jgi.p|Nanoce1779_2|578972, mRNA_2080 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578972
Unique Name	mRNA_2080
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2899
Alignment location	scaffold_4:740957..743855 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579058
Track	FilteredModels2
ProteinId	578972

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:740957..743855 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578972	gene_2080	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578972	mRNA_2080-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2080	CDS_2080	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:740957..743855-
coding sequence from alignment at scaffold_4:740957..743855-

mRNA sequence

>mRNA_2080 ID=mRNA_2080|Name=jgi.p|Nanoce1779_2|578972|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp
ACAGATTTTCGCAGCCATGTCCCCGGCTGGGGCAGGGCATGGTGGTGGCG
ATGATGGCAGCAGAAAGGAGAGGGATGGTGGACTCCGCGTCAAGGAGTTG
CGGAGCCAGCACTCGCTGCGACACAAGCTACAAAAATGGCGCGGCACGCA
ATGGATGTCGCGTGGAGCAGGGGAGATCAATCTGGACGAAAGTCAGTCCC
TGAGCCTCTTGGATGTCAGGGGAAGGATCAGGGCATGTGGGGCTGGTCTC
TGGCAGCGGCGTTCGCCCATGTGCATGGGGTTTTCGTTCATCTTTCTGGC
TGTGACGATTATGATGTGCGTGCTCCTCGTGGACGTTTTGCGCCTCATAC
CCTGTATGAATCCCAACTCCCCGTGCTTTAATCTGGCTCTGGCCGAGTTT
CAGAACATTTGCAGTTTTGAACGCATGCCGGTGCGCCTGACGACAACAGC
CATGCTACCCCATATCTACTCTCGCCTTCATGTCAAATCGGCAGTCATCG
ATGTGGCTCTGCGCGGTGACCATGGGCCAGGGCACGTGGCTACCTCTTCC
TTTACGGAAAAGGATGCACTATCTTCAATGGTACTGAAGGGAGGGGAGCA
GAATTTGACAGTCAATTCAATCATGGTGGTGACCAACACCACGGGGCTGG
CCATCATGTTCGCCTACCTGTTGAACGAGATCGATTTCCAGGTGGCCATC
ACGGCCAAGATCCAGGTTGTGGTGCAGACGCCTTTGCGAGTGCGCATAAA
AGCCCCCATTAATTCAAATTTCTTCCTGACTTGCGGTCACCTTCCCTGCA
AGGAGTCCGTCTGCAAGTACATTTGTCAATTTGGAAATTACCCTCTGAAA
GACCCCGACCCCGGCAATCCTTACCCTTATGTGACCCGCGTGGAGAAGGT
GCGCCTGGCTTACGACGAGGAAGGGGAATACATTATCTCCCCGCAAGTGG
ACGTGTGGCTGCGGGACTTCAAGGCTTCGGCTTCTTTCCCAAAATCTATT
TTGGACATGTACTTCTACAACAGCACCAAGCCAGGGAGCATATCGGGATT
TCGGGAGCGACACGACTTGGACGAGGACCACAAGCTTTTCCGGGTGACGT
TGCATGAATTCTTGCTGCAGAGCCTCGAAAGCTCGGGTGGCAAGCCCTTT
AGGATGAAAATGGACTTGCGGCTCTTAAACAACACGGCCGGTCAAGCTGC
CACCGCACGGGACTTCACCACGCGCTTCCTGGGAAAGGAACCCATGTATA
TATACCTTGCGGCCACCCCTATTGATACCACCTGTCCTCAGCTCCGCAAT
CCACTGCTGATGGTTCCACCAGCTGGTTTGTCCCTGAACACAAATTTGAG
CACCAAGGACTCATCAGACAGCAGCCTCAGCAACATGGGCGCCTTGACTG
ACGTTTTTCGTGTAAATTCCGTGGATCTTTTCAGCTTGAACAATACAATC
CTGCGATCATTTGCCAACATTACGCTTATGCTGCCCTTTGCGCTCGAAGG
CGAATTGCCTGCTCTGGACATGGACGGATTTGCCGGTCCCGATTTGGTGG
GCCATTTCAAGGCCTTTCCAGTCACTCTACCCCCAGTAGTGCCGCGACAA
GGATTTGAGCGGGACAGGGCGCCTGCTCACACGTTCGGCAAGGAGGCCAT
GTCGTTGTTTGCGCCCAAGGGGGAGGCGACAGTTGTATTATTTACTGAGG
CTGAGCTTTCACAATGGGGTATAGAAAAGCTGGAGACGATTTTCCCGAAT
GTGTTGTCGCAGTTGGAGGAGCTAGACATAGACTTGGTGGGTTCTCGACC
CGCTGAGCCGGGGAATGTGATGCAGACTTTTTTGAATGGTGTGGTAATCA
AACTAGCCAGCCTTGAGGACCGGCTGATCCAGCACGGGGAGGCAAATGAG
GACCGGATGTTCTTCACGCCGGCCGACAGCCCGATCAAGCCCCGCGTGCA
CATGGAGGTAAAATCCATCCCCTATGTGCACAGCAACGACACGGGCCTGC
TGATATATTTAAATTTCACCTACCCTGACGCCTTTCAAGGCCGCTTTGAC
ATTCGCGGGGGATCTATGCATTTCTTGCTCGCCGACTGGAATTCGACGGC
CCTGGCAACGGTCACTGTGCTGGACTCCTTACTCTCCCGGGAGCTCACGC
ACCTGGAGGCAGAGGTCTTCATCTCTGACAGGACACAGGCCGAGGCCGTG
CATAACTTGATTGATGCCCTCTCAAAAAAAATGCCCTCGGGTCTGCGCAT
TTCAGAGGGTGTAGTGGACTCGGCTCCAGGGCTGAAACAGCGAGTGCCCA
TTTCATATACGGACGTCGAGTGGGGATGTGCCGAGGACATAGTCGTGCAT
TGTCCGAACCTACGCCCCTCGGAAACCCGAGCCTGTTTGAACCAAGCTTT
GGACGGGCGAATCCTCTCCCACCAATGCCTCAAAGTGCTGCTGCCCCGCG
GAGAGCTGGATTTGGAGATCCGTGACCTAGCCAAAGTGATGGATGTGGGC
CGCGGCATCGCCAACGGATTGTTGGAGCAGGTCAAAACCACGGCCAGCAA
AGTCGCAGTAAATTTGATTGAGGTCTTGAGTCTAAGCACGCCAGAAGAAG
CGATTGACCTGCAGGTCATTTTAGAGGAGAATAAACTCGACATTGGCATG
CCTGAAGGGACCCCTGTAGAGGTGCGGGTTCGCGCCAATCTCTCCATTGG
CATCTTTGATAGCATTGACCTTACCTTTGTGGTTCCTCCTTTGGCCGTTG
AGATTTCGACGCCTTTGCCCAAAAACCTGGCTGAAAGACTAAAAGTGCCG
GCCCCGGTTGGGGATAAGAAGGCTGTGAAAGCGACGAAAAGGGATCAATA
TGATGATGAAGAAGAGGAAAAGAAGGATGATGATGATGATGATGATGAT

protein sequence of jgi.p|Nanoce1779_2|578972

>mRNA_2080-protein ID=mRNA_2080-protein|Name=jgi.p|Nanoce1779_2|578972|organism=Nannochloropsis oceanica|type=polypeptide|length=616bp
MSPAGAGHGGGDDGSRKERDGGLRVKELRSQHSLRHKLQKWRGTQWMSRG
AGEINLDESQSLSLLDVRGRIRACGAGLWQRRSPMCMGFSFIFLAVTIMM
CVLLVDVLRLIPCMNPNSPCFNLALAEFQNICSFERMPVRLTTTAMLPHI
YSRLHVKSAVIDVALRGDHGPGHVATSSFTEKDALSSMVLKGGEQNLTVN
SIMVVTNTTGLAIMFAYLLNEIDFQVAITAKIQVVVQTPLRVRIKAPINS
NFFLTCGHLPCKESVCKYICQFGNYPLKDPDPGNPYPYVTRVEKVRLAYD
EEGEYIISPQVDVWLRDFKASASFPKSILDMYFYNSTKPGSISGFRERHD
LDEDHKLFRVTLHEFLLQSLESSGGKPFRMKMDLRLLNNTAGQAATARDF
TTRFLGKEPMYIYLAATPIDTTCPQLRNPLLMVPPAGLSLNTNLSTKDSS
DSSLSNMGALTDVFRVNSVDLFSLNNTILRSFANITLMLPFALEGELPAL
DMDGFAGPDLVGHFKAFPVTLPPVVPRQGFERDRAPAHTFGKEAMSLFAP
KGEATVVLFTEAELSQWGIEKLETIFPNVLSQLEELDIDLVGSRPAEPGN
VMQTFLNGVVIKLASL

mRNA from alignment at scaffold_4:740957..743855-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2080 ID=mRNA_2080|Name=jgi.p|Nanoce1779_2|578972|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp|location=Sequence derived from alignment at scaffold_4:740957..743855- (Nannochloropsis oceanica)
ACAGATTTTCGCAGCCATGTCCCCGGCTGGGGCAGGGCATGGTGGTGGCG
ATGATGGCAGCAGAAAGGAGAGGGATGGTGGACTCCGCGTCAAGGAGTTG
CGGAGCCAGCACTCGCTGCGACACAAGCTACAAAAATGGCGCGGCACGCA
ATGGATGTCGCGTGGAGCAGGGGAGATCAATCTGGACGAAAGTCAGTCCC
TGAGCCTCTTGGATGTCAGGGGAAGGATCAGGGCATGTGGGGCTGGTCTC
TGGCAGCGGCGTTCGCCCATGTGCATGGGGTTTTCGTTCATCTTTCTGGC
TGTGACGATTATGATGTGCGTGCTCCTCGTGGACGTTTTGCGCCTCATAC
CCTGTATGAATCCCAACTCCCCGTGCTTTAATCTGGCTCTGGCCGAGTTT
CAGAACATTTGCAGTTTTGAACGCATGCCGGTGCGCCTGACGACAACAGC
CATGCTACCCCATATCTACTCTCGCCTTCATGTCAAATCGGCAGTCATCG
ATGTGGCTCTGCGCGGTGACCATGGGCCAGGGCACGTGGCTACCTCTTCC
TTTACGGAAAAGGATGCACTATCTTCAATGGTACTGAAGGGAGGGGAGCA
GAATTTGACAGTCAATTCAATCATGGTGGTGACCAACACCACGGGGCTGG
CCATCATGTTCGCCTACCTGTTGAACGAGATCGATTTCCAGGTGGCCATC
ACGGCCAAGATCCAGGTTGTGGTGCAGACGCCTTTGCGAGTGCGCATAAA
AGCCCCCATTAATTCAAATTTCTTCCTGACTTGCGGTCACCTTCCCTGCA
AGGAGTCCGTCTGCAAGTACATTTGTCAATTTGGAAATTACCCTCTGAAA
GACCCCGACCCCGGCAATCCTTACCCTTATGTGACCCGCGTGGAGAAGGT
GCGCCTGGCTTACGACGAGGAAGGGGAATACATTATCTCCCCGCAAGTGG
ACGTGTGGCTGCGGGACTTCAAGGCTTCGGCTTCTTTCCCAAAATCTATT
TTGGACATGTACTTCTACAACAGCACCAAGCCAGGGAGCATATCGGGATT
TCGGGAGCGACACGACTTGGACGAGGACCACAAGCTTTTCCGGGTGACGT
TGCATGAATTCTTGCTGCAGAGCCTCGAAAGCTCGGGTGGCAAGCCCTTT
AGGATGAAAATGGACTTGCGGCTCTTAAACAACACGGCCGGTCAAGCTGC
CACCGCACGGGACTTCACCACGCGCTTCCTGGGAAAGGAACCCATGTATA
TATACCTTGCGGCCACCCCTATTGATACCACCTGTCCTCAGCTCCGCAAT
CCACTGCTGATGGTTCCACCAGCTGGTTTGTCCCTGAACACAAATTTGAG
CACCAAGGACTCATCAGACAGCAGCCTCAGCAACATGGGCGCCTTGACTG
ACGTTTTTCGTGTAAATTCCGTGGATCTTTTCAGCTTGAACAATACAATC
CTGCGATCATTTGCCAACATTACGCTTATGCTGCCCTTTGCGCTCGAAGG
CGAATTGCCTGCTCTGGACATGGACGGATTTGCCGGTCCCGATTTGGTGG
GCCATTTCAAGGCCTTTCCAGTCACTCTACCCCCAGTAGTGCCGCGACAA
GGATTTGAGCGGGACAGGGCGCCTGCTCACACGTTCGGCAAGGAGGCCAT
GTCGTTGTTTGCGCCCAAGGGGGAGGCGACAGTTGTATTATTTACTGAGG
CTGAGCTTTCACAATGGGGTATAGAAAAGCTGGAGACGATTTTCCCGAAT
GTGTTGTCGCAGTTGGAGGAGCTAGACATAGACTTGGTGGGTTCTCGACC
CGCTGAGCCGGGGAATGTGATGCAGACTTTTTTGAATGGTGTGGTAATCA
AACTAGCCAGCCTTGAGGACCGGCTGATCCAGCACGGGGAGGCAAATGAG
GACCGGATGTTCTTCACGCCGGCCGACAGCCCGATCAAGCCCCGCGTGCA
CATGGAGGTAAAATCCATCCCCTATGTGCACAGCAACGACACGGGCCTGC
TGATATATTTAAATTTCACCTACCCTGACGCCTTTCAAGGCCGCTTTGAC
ATTCGCGGGGGATCTATGCATTTCTTGCTCGCCGACTGGAATTCGACGGC
CCTGGCAACGGTCACTGTGCTGGACTCCTTACTCTCCCGGGAGCTCACGC
ACCTGGAGGCAGAGGTCTTCATCTCTGACAGGACACAGGCCGAGGCCGTG
CATAACTTGATTGATGCCCTCTCAAAAAAAATGCCCTCGGGTCTGCGCAT
TTCAGAGGGTGTAGTGGACTCGGCTCCAGGGCTGAAACAGCGAGTGCCCA
TTTCATATACGGACGTCGAGTGGGGATGTGCCGAGGACATAGTCGTGCAT
TGTCCGAACCTACGCCCCTCGGAAACCCGAGCCTGTTTGAACCAAGCTTT
GGACGGGCGAATCCTCTCCCACCAATGCCTCAAAGTGCTGCTGCCCCGCG
GAGAGCTGGATTTGGAGATCCGTGACCTAGCCAAAGTGATGGATGTGGGC
CGCGGCATCGCCAACGGATTGTTGGAGCAGGTCAAAACCACGGCCAGCAA
AGTCGCAGTAAATTTGATTGAGGTCTTGAGTCTAAGCACGCCAGAAGAAG
CGATTGACCTGCAGGTCATTTTAGAGGAGAATAAACTCGACATTGGCATG
CCTGAAGGGACCCCTGTAGAGGTGCGGGTTCGCGCCAATCTCTCCATTGG
CATCTTTGATAGCATTGACCTTACCTTTGTGGTTCCTCCTTTGGCCGTTG
AGATTTCGACGCCTTTGCCCAAAAACCTGGCTGAAAGACTAAAAGTGCCG
GCCCCGGTTGGGGATAAGAAGGCTGTGAAAGCGACGAAAAGGGATCAATA
TGATGATGAAGAAGAGGAAAAGAAGGATGATGATGATGATGATGATGAT

Coding sequence (CDS) from alignment at scaffold_4:740957..743855-

>mRNA_2080 ID=mRNA_2080|Name=jgi.p|Nanoce1779_2|578972|organism=Nannochloropsis oceanica|type=CDS|length=1850bp|location=Sequence derived from alignment at scaffold_4:740957..743855- (Nannochloropsis oceanica)
ATGTCCCCGGCTGGGGCAGGGCATGGTGGTGGCGATGATGGCAGCAGAAA
GGAGAGGGATGGTGGACTCCGCGTCAAGGAGTTGCGGAGCCAGCACTCGC
TGCGACACAAGCTACAAAAATGGCGCGGCACGCAATGGATGTCGCGTGGA
GCAGGGGAGATCAATCTGGACGAAAGTCAGTCCCTGAGCCTCTTGGATGT
CAGGGGAAGGATCAGGGCATGTGGGGCTGGTCTCTGGCAGCGGCGTTCGC
CCATGTGCATGGGGTTTTCGTTCATCTTTCTGGCTGTGACGATTATGATG
TGCGTGCTCCTCGTGGACGTTTTGCGCCTCATACCCTGTATGAATCCCAA
CTCCCCGTGCTTTAATCTGGCTCTGGCCGAGTTTCAGAACATTTGCAGTT
TTGAACGCATGCCGGTGCGCCTGACGACAACAGCCATGCTACCCCATATC
TACTCTCGCCTTCATGTCAAATCGGCAGTCATCGATGTGGCTCTGCGCGG
TGACCATGGGCCAGGGCACGTGGCTACCTCTTCCTTTACGGAAAAGGATG
CACTATCTTCAATGGTACTGAAGGGAGGGGAGCAGAATTTGACAGTCAAT
TCAATCATGGTGGTGACCAACACCACGGGGCTGGCCATCATGTTCGCCTA
CCTGTTGAACGAGATCGATTTCCAGGTGGCCATCACGGCCAAGATCCAGG
TTGTGGTGCAGACGCCTTTGCGAGTGCGCATAAAAGCCCCCATTAATTCA
AATTTCTTCCTGACTTGCGGTCACCTTCCCTGCAAGGAGTCCGTCTGCAA
GTACATTTGTCAATTTGGAAATTACCCTCTGAAAGACCCCGACCCCGGCA
ATCCTTACCCTTATGTGACCCGCGTGGAGAAGGTGCGCCTGGCTTACGAC
GAGGAAGGGGAATACATTATCTCCCCGCAAGTGGACGTGTGGCTGCGGGA
CTTCAAGGCTTCGGCTTCTTTCCCAAAATCTATTTTGGACATGTACTTCT
ACAACAGCACCAAGCCAGGGAGCATATCGGGATTTCGGGAGCGACACGAC
TTGGACGAGGACCACAAGCTTTTCCGGGTGACGTTGCATGAATTCTTGCT
GCAGAGCCTCGAAAGCTCGGGTGGCAAGCCCTTTAGGATGAAAATGGACT
TGCGGCTCTTAAACAACACGGCCGGTCAAGCTGCCACCGCACGGGACTTC
ACCACGCGCTTCCTGGGAAAGGAACCCATGTATATATACCTTGCGGCCAC
CCCTATTGATACCACCTGTCCTCAGCTCCGCAATCCACTGCTGATGGTTC
CACCAGCTGGTTTGTCCCTGAACACAAATTTGAGCACCAAGGACTCATCA
GACAGCAGCCTCAGCAACATGGGCGCCTTGACTGACGTTTTTCGTGTAAA
TTCCGTGGATCTTTTCAGCTTGAACAATACAATCCTGCGATCATTTGCCA
ACATTACGCTTATGCTGCCCTTTGCGCTCGAAGGCGAATTGCCTGCTCTG
GACATGGACGGATTTGCCGGTCCCGATTTGGTGGGCCATTTCAAGGCCTT
TCCAGTCACTCTACCCCCAGTAGTGCCGCGACAAGGATTTGAGCGGGACA
GGGCGCCTGCTCACACGTTCGGCAAGGAGGCCATGTCGTTGTTTGCGCCC
AAGGGGGAGGCGACAGTTGTATTATTTACTGAGGCTGAGCTTTCACAATG
GGGTATAGAAAAGCTGGAGACGATTTTCCCGAATGTGTTGTCGCAGTTGG
AGGAGCTAGACATAGACTTGGTGGGTTCTCGACCCGCTGAGCCGGGGAAT
GTGATGCAGACTTTTTTGAATGGTGTGGTAATCAAACTAGCCAGCCTTGA

Synonyms

Publications