jgi.p|Nanoce1779_2|578807, mRNA_2033 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578807
Unique Name	mRNA_2033
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2798
Alignment location	scaffold_4:609873..612670 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578893
Track	FilteredModels2
ProteinId	578807

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:609873..612670 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578807	gene_2033	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578807	mRNA_2033-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2033	CDS_2033	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:609873..612670-
coding sequence from alignment at scaffold_4:609873..612670-

mRNA sequence

>mRNA_2033 ID=mRNA_2033|Name=jgi.p|Nanoce1779_2|578807|organism=Nannochloropsis oceanica|type=mRNA|length=2798bp
CAGCTAGCGAGGGTAGGGAAGCGGAAAGCGGGCTTGCCCTTGGTCGAGAA
GCCAAATTTGCGAGACCCCCCCGCACGGCACGCAAACGCACGCACGCAAT
TATGGACCTACCGGAATACAACAGCAGCCCCCGAAACTCCATACTGAGTC
CGGGGCTGACCCACCGTGCCAGCAAGACCCCTAGAAGCTCTGGTCTGGGC
GAGGAGACGACGTCGCACTTCCAATTCAATGAGATTGCCTTTGGTGTGAG
TAGGATAACATCCCATGCCTGTTACATGCCCAGCTTTGTCTAGCACCTTC
ATGTGTCAGCGCGTATCAGCACTCCTTCCATCCCTCTTGTTGCGTCCTTT
CTCTATCAACAGGGCTGGAGACATACCTCGTACCCCGGCTCTGCACCCTA
TGCATACACTCCTCCTCGCTTTAACGTCACACAGTCAAACCTCTGCTTCC
ATTGTCGTCACACCAATTCTTGCATTTTAACTCACACACTTGCACAGCAC
CAACCCTCAATCCCTGAGGAAGAGTCCGGCGGGCAATACAACAACAACAA
AGAAAACAAGATCAAGACCCCTTTCCAACATCTCCGTCAAAGCCCCCGCC
TCGTCGCCATCTCCCCCTTGAAGCGACTTTTACTGGGGGCCAGCGTCTCA
GCCGTTCTTCTCGGCATCTTATTTGTAGCTGGGTTTTTTGACAATCGCTC
CCAGTCTTCCGGTGGCACCCCTCGTCGTTCCGAAGGAGGTATGCGTCCTG
CCTCCGCCTCTTTGCGAGGCACTGTCGGAGACATTGGCCCTGCTGCCGGT
CCTGCCGCAGCGGCATCCCTGGCTTCAACACTCACTAGTGGGATGCTCTT
TCCTCGTAATAATGACGTAGACCACCATAAGCCGCGTGTGCTGATGATTC
ATTCGTTGAAGCCATTTGAACGTCGGAACGCCCACCATTTCAGGCATCAC
GACCCGGACAACAAGCTCACGGGGGGGCTGGCCTTTTCACCCCCTGCCGT
AGGGAGCCGACAGAAGAAAGTGCAGGAGTCCCAGGAGGAGGATACTGCTG
AGTACGTCGACGAGGTGGATCACAACGAAGATTTGGAGCGACGGGCTGTA
TCGCCCCCGGCGGAGGATGTGTTGAAGATTGACCAGGCTTTGAACAAGCT
TGCGTTGGTGTTGCCTTCGCCATTCAAGACGACGGGGGTCGTTTCTCATT
TTCATTCTATCACAGGCGTGGACAAGTACCACCATTTTGACGTGAATGAT
TATTTTGGGTCGTCTGTAACTAATATGGGGAGCGATGCCAAGACTGGCTT
GACCACGCTCGCGGTGGGTGCACCCGGGGCTCTGGAAAATTCGGGAATGG
TCTACTTCTTGAATCTGCGAAAGGATGGAAGCGTAGATGGTTATAGTTAT
TTGACGAATGCGGATGATACCTTGGGGGAGCGTTGGACGTCAAATGTGGC
TTTGGGATGGACGGTGGAAAATATCGGGGATTTGGATGGGGACGGTATTG
ACGACCTGGCCGTTGGTGCGATTGGTCACCCCTTCGGGAGCTCACAAGGC
GCGATCTACATATTGTTTTTGACGGAAGATAAGCGAATTAAGGGGCATAC
ATTCATCACAACGGGGGAGGCAGGGTTCGAGCCTGTCCTAAAGGAAAACT
CGTGCTTTGGCTCGTCGATCGCCCGTCTCGGAGATTTAGACGGAGATGGC
GTTACTGAGCTTGCGGTGGGCGCGATGGGCTTGGGCAAGCAGCGAGGGGG
GGTGTACATTCTCTATTTAAATAAAGATGGGACGGTGAAAAAGACAACGC
AGATTTCGTCATTGTATGGGTGGGACCGTAAACTGAATGTGGAAGATCAG
TTTGGACATTCAGTGCATTCGATTGGCGATTTAGATGGGGATGGGGTCCC
TGAATTGGCGGTGGGTGGTGACGGTTTCCCCTCGGGAGAATTCTATGGCT
CGGTGTGGATCTTGTTCTTGACCAAGGAGGGGGGGGTGAAGAAGTGGAGG
AGGTTGGATGAGCTGGATGCGATGTTAGAGCCTGAGAGCTTGTTTGGGGG
GTCGATTGCTTCGCTTGGGGATCTAGACGGAGATGGATTTCCGGAGTTGA
TTGTTGGGGCACCTGGCGCGAATGAATTTAAGGGGGACGCGTACATTATT
TCGTTGAATGCAGATGCAACGGTGAAGACTTTTAAGAGCGTGGTGGATGA
GGTTGGGGTGTTGTCGGATAGTATAAAGGAGGAGGATGAGTTTGCCTGGT
CGTTGTGTAACGTTGGGGATATTAATGGGGATGGCGTGCCAGATTTGGCA
ATCGGCGCTGAAGCCTCACCAACGGATAAAAACTATGGCTCATTGCACGT
TGTATTTTTGACGCCAAGGTAGAAAGGGGGTGCATAGTAGATGGGAGGGA
AGGGAGAGAGAAAATGACACAAGGAAGTCTCGAGGTGCGGAGAGAAGGAA
AAAAAAGAAGAGAATCTTTTGATAGCGTCTAGGGTCTCTTTTATATTCAA
TTTATATGTACCCTGGCAAAAGTAGTACCAGACAAAAAGCAAAAAGTTGC
CGAAATGTTGAGAATAAGTTTGGTGCGCGCGGACGCGTCCGTAGCTCACC
CTTGGTTTTAGGCGTGGGGGCGTAATCCCTGCATGAGTATTACGTATTTG
CTTTTTGTATTAGTGCTGATAGGACGGGCAGCACCTCGAAATGGGAAGCA
ACTTCGCCTGGTTACTAGCCAAAATATGATGTGACTTGTAAATACGGTGA
CACGTTTGTTTTATGCGCGTATTGGCTGCAGCAACGACGAGGCACCAT

protein sequence of jgi.p|Nanoce1779_2|578807

>mRNA_2033-protein ID=mRNA_2033-protein|Name=jgi.p|Nanoce1779_2|578807|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MRPASASLRGTVGDIGPAAGPAAAASLASTLTSGMLFPRNNDVDHHKPRV
LMIHSLKPFERRNAHHFRHHDPDNKLTGGLAFSPPAVGSRQKKVQESQEE
DTAEYVDEVDHNEDLERRAVSPPAEDVLKIDQALNKLALVLPSPFKTTGV
VSHFHSITGVDKYHHFDVNDYFGSSVTNMGSDAKTGLTTLAVGAPGALEN
SGMVYFLNLRKDGSVDGYSYLTNADDTLGERWTSNVALGWTVENIGDLDG
DGIDDLAVGAIGHPFGSSQGAIYILFLTEDKRIKGHTFITTGEAGFEPVL
KENSCFGSSIARLGDLDGDGVTELAVGAMGLGKQRGGVYILYLNKDGTVK
KTTQISSLYGWDRKLNVEDQFGHSVHSIGDLDGDGVPELAVGGDGFPSGE
FYGSVWILFLTKEGGVKKWRRLDELDAMLEPESLFGGSIASLGDLDGDGF
PELIVGAPGANEFKGDAYIISLNADATVKTFKSVVDEVGVLSDSIKEEDE
FAWSLCNVGDINGDGVPDLAIGAEASPTDKNYGSLHVVFLTPR*

mRNA from alignment at scaffold_4:609873..612670-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2033 ID=mRNA_2033|Name=jgi.p|Nanoce1779_2|578807|organism=Nannochloropsis oceanica|type=mRNA|length=2798bp|location=Sequence derived from alignment at scaffold_4:609873..612670- (Nannochloropsis oceanica)
CAGCTAGCGAGGGTAGGGAAGCGGAAAGCGGGCTTGCCCTTGGTCGAGAA
GCCAAATTTGCGAGACCCCCCCGCACGGCACGCAAACGCACGCACGCAAT
TATGGACCTACCGGAATACAACAGCAGCCCCCGAAACTCCATACTGAGTC
CGGGGCTGACCCACCGTGCCAGCAAGACCCCTAGAAGCTCTGGTCTGGGC
GAGGAGACGACGTCGCACTTCCAATTCAATGAGATTGCCTTTGGTGTGAG
TAGGATAACATCCCATGCCTGTTACATGCCCAGCTTTGTCTAGCACCTTC
ATGTGTCAGCGCGTATCAGCACTCCTTCCATCCCTCTTGTTGCGTCCTTT
CTCTATCAACAGGGCTGGAGACATACCTCGTACCCCGGCTCTGCACCCTA
TGCATACACTCCTCCTCGCTTTAACGTCACACAGTCAAACCTCTGCTTCC
ATTGTCGTCACACCAATTCTTGCATTTTAACTCACACACTTGCACAGCAC
CAACCCTCAATCCCTGAGGAAGAGTCCGGCGGGCAATACAACAACAACAA
AGAAAACAAGATCAAGACCCCTTTCCAACATCTCCGTCAAAGCCCCCGCC
TCGTCGCCATCTCCCCCTTGAAGCGACTTTTACTGGGGGCCAGCGTCTCA
GCCGTTCTTCTCGGCATCTTATTTGTAGCTGGGTTTTTTGACAATCGCTC
CCAGTCTTCCGGTGGCACCCCTCGTCGTTCCGAAGGAGGTATGCGTCCTG
CCTCCGCCTCTTTGCGAGGCACTGTCGGAGACATTGGCCCTGCTGCCGGT
CCTGCCGCAGCGGCATCCCTGGCTTCAACACTCACTAGTGGGATGCTCTT
TCCTCGTAATAATGACGTAGACCACCATAAGCCGCGTGTGCTGATGATTC
ATTCGTTGAAGCCATTTGAACGTCGGAACGCCCACCATTTCAGGCATCAC
GACCCGGACAACAAGCTCACGGGGGGGCTGGCCTTTTCACCCCCTGCCGT
AGGGAGCCGACAGAAGAAAGTGCAGGAGTCCCAGGAGGAGGATACTGCTG
AGTACGTCGACGAGGTGGATCACAACGAAGATTTGGAGCGACGGGCTGTA
TCGCCCCCGGCGGAGGATGTGTTGAAGATTGACCAGGCTTTGAACAAGCT
TGCGTTGGTGTTGCCTTCGCCATTCAAGACGACGGGGGTCGTTTCTCATT
TTCATTCTATCACAGGCGTGGACAAGTACCACCATTTTGACGTGAATGAT
TATTTTGGGTCGTCTGTAACTAATATGGGGAGCGATGCCAAGACTGGCTT
GACCACGCTCGCGGTGGGTGCACCCGGGGCTCTGGAAAATTCGGGAATGG
TCTACTTCTTGAATCTGCGAAAGGATGGAAGCGTAGATGGTTATAGTTAT
TTGACGAATGCGGATGATACCTTGGGGGAGCGTTGGACGTCAAATGTGGC
TTTGGGATGGACGGTGGAAAATATCGGGGATTTGGATGGGGACGGTATTG
ACGACCTGGCCGTTGGTGCGATTGGTCACCCCTTCGGGAGCTCACAAGGC
GCGATCTACATATTGTTTTTGACGGAAGATAAGCGAATTAAGGGGCATAC
ATTCATCACAACGGGGGAGGCAGGGTTCGAGCCTGTCCTAAAGGAAAACT
CGTGCTTTGGCTCGTCGATCGCCCGTCTCGGAGATTTAGACGGAGATGGC
GTTACTGAGCTTGCGGTGGGCGCGATGGGCTTGGGCAAGCAGCGAGGGGG
GGTGTACATTCTCTATTTAAATAAAGATGGGACGGTGAAAAAGACAACGC
AGATTTCGTCATTGTATGGGTGGGACCGTAAACTGAATGTGGAAGATCAG
TTTGGACATTCAGTGCATTCGATTGGCGATTTAGATGGGGATGGGGTCCC
TGAATTGGCGGTGGGTGGTGACGGTTTCCCCTCGGGAGAATTCTATGGCT
CGGTGTGGATCTTGTTCTTGACCAAGGAGGGGGGGGTGAAGAAGTGGAGG
AGGTTGGATGAGCTGGATGCGATGTTAGAGCCTGAGAGCTTGTTTGGGGG
GTCGATTGCTTCGCTTGGGGATCTAGACGGAGATGGATTTCCGGAGTTGA
TTGTTGGGGCACCTGGCGCGAATGAATTTAAGGGGGACGCGTACATTATT
TCGTTGAATGCAGATGCAACGGTGAAGACTTTTAAGAGCGTGGTGGATGA
GGTTGGGGTGTTGTCGGATAGTATAAAGGAGGAGGATGAGTTTGCCTGGT
CGTTGTGTAACGTTGGGGATATTAATGGGGATGGCGTGCCAGATTTGGCA
ATCGGCGCTGAAGCCTCACCAACGGATAAAAACTATGGCTCATTGCACGT
TGTATTTTTGACGCCAAGGTAGAAAGGGGGTGCATAGTAGATGGGAGGGA
AGGGAGAGAGAAAATGACACAAGGAAGTCTCGAGGTGCGGAGAGAAGGAA
AAAAAAGAAGAGAATCTTTTGATAGCGTCTAGGGTCTCTTTTATATTCAA
TTTATATGTACCCTGGCAAAAGTAGTACCAGACAAAAAGCAAAAAGTTGC
CGAAATGTTGAGAATAAGTTTGGTGCGCGCGGACGCGTCCGTAGCTCACC
CTTGGTTTTAGGCGTGGGGGCGTAATCCCTGCATGAGTATTACGTATTTG
CTTTTTGTATTAGTGCTGATAGGACGGGCAGCACCTCGAAATGGGAAGCA
ACTTCGCCTGGTTACTAGCCAAAATATGATGTGACTTGTAAATACGGTGA
CACGTTTGTTTTATGCGCGTATTGGCTGCAGCAACGACGAGGCACCAT

Coding sequence (CDS) from alignment at scaffold_4:609873..612670-

>mRNA_2033 ID=mRNA_2033|Name=jgi.p|Nanoce1779_2|578807|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at scaffold_4:609873..612670- (Nannochloropsis oceanica)
ATGCGTCCTGCCTCCGCCTCTTTGCGAGGCACTGTCGGAGACATTGGCCC
TGCTGCCGGTCCTGCCGCAGCGGCATCCCTGGCTTCAACACTCACTAGTG
GGATGCTCTTTCCTCGTAATAATGACGTAGACCACCATAAGCCGCGTGTG
CTGATGATTCATTCGTTGAAGCCATTTGAACGTCGGAACGCCCACCATTT
CAGGCATCACGACCCGGACAACAAGCTCACGGGGGGGCTGGCCTTTTCAC
CCCCTGCCGTAGGGAGCCGACAGAAGAAAGTGCAGGAGTCCCAGGAGGAG
GATACTGCTGAGTACGTCGACGAGGTGGATCACAACGAAGATTTGGAGCG
ACGGGCTGTATCGCCCCCGGCGGAGGATGTGTTGAAGATTGACCAGGCTT
TGAACAAGCTTGCGTTGGTGTTGCCTTCGCCATTCAAGACGACGGGGGTC
GTTTCTCATTTTCATTCTATCACAGGCGTGGACAAGTACCACCATTTTGA
CGTGAATGATTATTTTGGGTCGTCTGTAACTAATATGGGGAGCGATGCCA
AGACTGGCTTGACCACGCTCGCGGTGGGTGCACCCGGGGCTCTGGAAAAT
TCGGGAATGGTCTACTTCTTGAATCTGCGAAAGGATGGAAGCGTAGATGG
TTATAGTTATTTGACGAATGCGGATGATACCTTGGGGGAGCGTTGGACGT
CAAATGTGGCTTTGGGATGGACGGTGGAAAATATCGGGGATTTGGATGGG
GACGGTATTGACGACCTGGCCGTTGGTGCGATTGGTCACCCCTTCGGGAG
CTCACAAGGCGCGATCTACATATTGTTTTTGACGGAAGATAAGCGAATTA
AGGGGCATACATTCATCACAACGGGGGAGGCAGGGTTCGAGCCTGTCCTA
AAGGAAAACTCGTGCTTTGGCTCGTCGATCGCCCGTCTCGGAGATTTAGA
CGGAGATGGCGTTACTGAGCTTGCGGTGGGCGCGATGGGCTTGGGCAAGC
AGCGAGGGGGGGTGTACATTCTCTATTTAAATAAAGATGGGACGGTGAAA
AAGACAACGCAGATTTCGTCATTGTATGGGTGGGACCGTAAACTGAATGT
GGAAGATCAGTTTGGACATTCAGTGCATTCGATTGGCGATTTAGATGGGG
ATGGGGTCCCTGAATTGGCGGTGGGTGGTGACGGTTTCCCCTCGGGAGAA
TTCTATGGCTCGGTGTGGATCTTGTTCTTGACCAAGGAGGGGGGGGTGAA
GAAGTGGAGGAGGTTGGATGAGCTGGATGCGATGTTAGAGCCTGAGAGCT
TGTTTGGGGGGTCGATTGCTTCGCTTGGGGATCTAGACGGAGATGGATTT
CCGGAGTTGATTGTTGGGGCACCTGGCGCGAATGAATTTAAGGGGGACGC
GTACATTATTTCGTTGAATGCAGATGCAACGGTGAAGACTTTTAAGAGCG
TGGTGGATGAGGTTGGGGTGTTGTCGGATAGTATAAAGGAGGAGGATGAG
TTTGCCTGGTCGTTGTGTAACGTTGGGGATATTAATGGGGATGGCGTGCC
AGATTTGGCAATCGGCGCTGAAGCCTCACCAACGGATAAAAACTATGGCT
CATTGCACGTTGTATTTTTGACGCCAAGGTAG

Synonyms

Publications