jgi.p|Nanoce1779_2|578807, gene_2033 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578807
Unique Namegene_2033
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:609873..612670 -

Link to JBrowse

Properties
Property NameValue
TranscriptId578893
ProteinId578807
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:609873..612670 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0008305integrin complex
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL058ncniL058Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02630NO04G02630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578807mRNA_2033-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578807mRNA_2033Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|578807

>mRNA_2033-protein ID=mRNA_2033-protein|Name=jgi.p|Nanoce1779_2|578807|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MRPASASLRGTVGDIGPAAGPAAAASLASTLTSGMLFPRNNDVDHHKPRV
LMIHSLKPFERRNAHHFRHHDPDNKLTGGLAFSPPAVGSRQKKVQESQEE
DTAEYVDEVDHNEDLERRAVSPPAEDVLKIDQALNKLALVLPSPFKTTGV
VSHFHSITGVDKYHHFDVNDYFGSSVTNMGSDAKTGLTTLAVGAPGALEN
SGMVYFLNLRKDGSVDGYSYLTNADDTLGERWTSNVALGWTVENIGDLDG
DGIDDLAVGAIGHPFGSSQGAIYILFLTEDKRIKGHTFITTGEAGFEPVL
KENSCFGSSIARLGDLDGDGVTELAVGAMGLGKQRGGVYILYLNKDGTVK
KTTQISSLYGWDRKLNVEDQFGHSVHSIGDLDGDGVPELAVGGDGFPSGE
FYGSVWILFLTKEGGVKKWRRLDELDAMLEPESLFGGSIASLGDLDGDGF
PELIVGAPGANEFKGDAYIISLNADATVKTFKSVVDEVGVLSDSIKEEDE
FAWSLCNVGDINGDGVPDLAIGAEASPTDKNYGSLHVVFLTPR*
back to top
Synonyms
Publications