jgi.p|Nanoce1779_2|628184, mRNA_2019 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628184
Unique Name	mRNA_2019
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1925
Alignment location	scaffold_4:576232..578156 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628270
Track	FilteredModels2
ProteinId	628184

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:576232..578156 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628184	gene_2019	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628184	mRNA_2019-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2019	CDS_2019	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:576232..578156+
coding sequence from alignment at scaffold_4:576232..578156+

mRNA sequence

>mRNA_2019 ID=mRNA_2019|Name=jgi.p|Nanoce1779_2|628184|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp
GGTTGTTGTATAGCTTCTTCCCTGTTAAATGATTTTGATGGTTTTTGCTA
CGAATGATGCTACATCCAAATGTGCCGGGCTTTGAATATATGGGAAAACT
CTTACCTTTCCTCGCACGGGTATCGTGTTTAATATTCCGCTTCACGATGG
TTATGCGGACCCACTTAACGGGTCGTGCAGTCCGGTCGACGGACCATCGA
CGAGGAATAATTAGCTTCCGCGTTAAAACTGGGAGCGTTGAGTCTGACTA
CTCGCGACTCAATGTTAATTAAATTATCACTTCTCTGCAGCGACGACATG
GCCATCTTAATCACATGTATTATGGCAACCTTTCTCTCACGCGCATGCAG
CCGAACGCGCACGCCTCCCTATGAGTCCTCATGTCAGAAGGCCACGGAGC
GGCCATTTGAATTATGGTGAACGGCGACGAAAGGATGGTAACAGCGAGCA
ACTAACGCCCGCATCATTCTCCTCCGCCATCCTGATTTGAAGTATCACAG
ACACTCATCCCTCGCGACGCAATCCCCCATACGACCCTCAGGTTGCGAGG
GAGAACAAGAAGAAGCAGCATCAGTAGCAACAGCACCGGCAACGCGGTTG
GACCCAGTAGTATTATGTTATGTAAGATGCCCACACGGGAACAACTGCGA
GAAAAAATGTACGCCTCGCCAAATGTCACAAGCAAAATCATGTTCTTGGT
CCTCATAGGCGTCGCAGCCACTGTCCAATTTCTTCTCCCCATGAGCGTCG
CAGCCACTCTTCATAACATATATCTCTCGCATGGAACCAAGATCAACCAA
ACCCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATACGTCCCTGCCC
TAGTTACATCATTATAGGCGCACAGAAGTGTGGAACCACGTCCTTGTATG
AATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACAGGCGGGAGACT
CATTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTGACTTGGCGGGA
GCACCGGGACACGTATCACAAGTTTTTCAACAAGACGTTTCCAGACGAGA
ACTCATCACGCATAATTGGGGAATCATCGCCGAGCTATATGTTGTATAGC
GACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAGGCCAAGATGCT
GGTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCAGTTCCAGATGC
TCATCGATACGGAAGGTGAAGGGACCCCAGAGCAGAAAAAAGCTAGGGGA
ACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAGAAGGAGTTGGA
GGAGCTAGAGGCATGCGGAGTGACGCCGGATATGACGTACGAAGAGTTTA
AGACACGGTTTTTAGCTTCGAGACCACTTGGGCATGGCAGCCATTCGTTG
CTAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGTGGATGGCTGAATT
TGGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACCGAGGAGATGAGGA
CGGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTTTGCGTTCTTGGGG
CTGCCTCCTCATGACATAATTGATACAGATGCCAAGAATACTAGGCAGTA
CGAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCAGCATTTTACGCGC
CGTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACCGAGGGGGATGGCG
GGGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCAATGGACAGGTACT
GTCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACAAATGTAAGGACTG
AACAAAATATGCGGCGAAAGCGGGAATAAAGTAATGAAATGCATGTGTCC
GTGGCGCGATCGTAATTTTTATTTTTTTACTTTACGAGGGAGGGGTGGGG
AGGTTGTTATATAGCTTCTTCCCTG

protein sequence of jgi.p|Nanoce1779_2|628184

>mRNA_2019-protein ID=mRNA_2019-protein|Name=jgi.p|Nanoce1779_2|628184|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MLCKMPTREQLREKMYASPNVTSKIMFLVLIGVAATVQFLLPMSVAATLH
NIYLSHGTKINQTRRSINLESERGIRPCPSYIIIGAQKCGTTSLYEYLCQ
HPLVLRANRRETHYLDRRWRREEGLTWREHRDTYHKFFNKTFPDENSSRI
IGESSPSYMLYSDVVVPRVRELAPEAKMLVMLRCPVARAYSQFQMLIDTE
GEGTPEQKKARGTLWKGKSFEEVVEKELEELEACGVTPDMTYEEFKTRFL
ASRPLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAA
QTQVGKVFAFLGLPPHDIIDTDAKNTRQYEQLDEKMQARLAAFYAPFNDK
LFEMLARPRGMAGWAGMKEEGGVRNGQVLSVDEAKSEQLRTNVRTEQNMR
RKRE*

mRNA from alignment at scaffold_4:576232..578156+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2019 ID=mRNA_2019|Name=jgi.p|Nanoce1779_2|628184|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp|location=Sequence derived from alignment at scaffold_4:576232..578156+ (Nannochloropsis oceanica)
GGTTGTTGTATAGCTTCTTCCCTGTTAAATGATTTTGATGGTTTTTGCTA
CGAATGATGCTACATCCAAATGTGCCGGGCTTTGAATATATGGGAAAACT
CTTACCTTTCCTCGCACGGGTATCGTGTTTAATATTCCGCTTCACGATGG
TTATGCGGACCCACTTAACGGGTCGTGCAGTCCGGTCGACGGACCATCGA
CGAGGAATAATTAGCTTCCGCGTTAAAACTGGGAGCGTTGAGTCTGACTA
CTCGCGACTCAATGTTAATTAAATTATCACTTCTCTGCAGCGACGACATG
GCCATCTTAATCACATGTATTATGGCAACCTTTCTCTCACGCGCATGCAG
CCGAACGCGCACGCCTCCCTATGAGTCCTCATGTCAGAAGGCCACGGAGC
GGCCATTTGAATTATGGTGAACGGCGACGAAAGGATGGTAACAGCGAGCA
ACTAACGCCCGCATCATTCTCCTCCGCCATCCTGATTTGAAGTATCACAG
ACACTCATCCCTCGCGACGCAATCCCCCATACGACCCTCAGGTTGCGAGG
GAGAACAAGAAGAAGCAGCATCAGTAGCAACAGCACCGGCAACGCGGTTG
GACCCAGTAGTATTATGTTATGTAAGATGCCCACACGGGAACAACTGCGA
GAAAAAATGTACGCCTCGCCAAATGTCACAAGCAAAATCATGTTCTTGGT
CCTCATAGGCGTCGCAGCCACTGTCCAATTTCTTCTCCCCATGAGCGTCG
CAGCCACTCTTCATAACATATATCTCTCGCATGGAACCAAGATCAACCAA
ACCCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATACGTCCCTGCCC
TAGTTACATCATTATAGGCGCACAGAAGTGTGGAACCACGTCCTTGTATG
AATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACAGGCGGGAGACT
CATTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTGACTTGGCGGGA
GCACCGGGACACGTATCACAAGTTTTTCAACAAGACGTTTCCAGACGAGA
ACTCATCACGCATAATTGGGGAATCATCGCCGAGCTATATGTTGTATAGC
GACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAGGCCAAGATGCT
GGTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCAGTTCCAGATGC
TCATCGATACGGAAGGTGAAGGGACCCCAGAGCAGAAAAAAGCTAGGGGA
ACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAGAAGGAGTTGGA
GGAGCTAGAGGCATGCGGAGTGACGCCGGATATGACGTACGAAGAGTTTA
AGACACGGTTTTTAGCTTCGAGACCACTTGGGCATGGCAGCCATTCGTTG
CTAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGTGGATGGCTGAATT
TGGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACCGAGGAGATGAGGA
CGGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTTTGCGTTCTTGGGG
CTGCCTCCTCATGACATAATTGATACAGATGCCAAGAATACTAGGCAGTA
CGAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCAGCATTTTACGCGC
CGTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACCGAGGGGGATGGCG
GGGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCAATGGACAGGTACT
GTCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACAAATGTAAGGACTG
AACAAAATATGCGGCGAAAGCGGGAATAAAGTAATGAAATGCATGTGTCC
GTGGCGCGATCGTAATTTTTATTTTTTTACTTTACGAGGGAGGGGTGGGG
AGGTTGTTATATAGCTTCTTCCCTG

Coding sequence (CDS) from alignment at scaffold_4:576232..578156+

>mRNA_2019 ID=mRNA_2019|Name=jgi.p|Nanoce1779_2|628184|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_4:576232..578156+ (Nannochloropsis oceanica)
ATGTTATGTAAGATGCCCACACGGGAACAACTGCGAGAAAAAATGTACGC
CTCGCCAAATGTCACAAGCAAAATCATGTTCTTGGTCCTCATAGGCGTCG
CAGCCACTGTCCAATTTCTTCTCCCCATGAGCGTCGCAGCCACTCTTCAT
AACATATATCTCTCGCATGGAACCAAGATCAACCAAACCCGCCGCTCGAT
CAACCTGGAGTCGGAACGAGGAATACGTCCCTGCCCTAGTTACATCATTA
TAGGCGCACAGAAGTGTGGAACCACGTCCTTGTATGAATATCTGTGTCAG
CATCCCTTGGTGTTGAGGGCAAACAGGCGGGAGACTCATTACCTGGATCG
GCGGTGGCGGAGGGAGGAAGGGTTGACTTGGCGGGAGCACCGGGACACGT
ATCACAAGTTTTTCAACAAGACGTTTCCAGACGAGAACTCATCACGCATA
ATTGGGGAATCATCGCCGAGCTATATGTTGTATAGCGACGTGGTGGTGCC
GAGGGTAAGGGAGCTGGCGCCCGAGGCCAAGATGCTGGTGATGCTCCGTT
GTCCTGTGGCGAGGGCCTACAGTCAGTTCCAGATGCTCATCGATACGGAA
GGTGAAGGGACCCCAGAGCAGAAAAAAGCTAGGGGAACGCTCTGGAAAGG
GAAGTCGTTCGAGGAAGTGGTCGAGAAGGAGTTGGAGGAGCTAGAGGCAT
GCGGAGTGACGCCGGATATGACGTACGAAGAGTTTAAGACACGGTTTTTA
GCTTCGAGACCACTTGGGCATGGCAGCCATTCGTTGCTAGGGAGAGGGCT
GTATGCCTTGCAGTTGCAGCCGTGGATGGCTGAATTTGGGGGAGACAAGG
GTCAGTTGATGGTATTGTTTACCGAGGAGATGAGGACGGGGGAGGCGGCG
CAGACACAGGTCGGCAAGGTGTTTGCGTTCTTGGGGCTGCCTCCTCATGA
CATAATTGATACAGATGCCAAGAATACTAGGCAGTACGAACAGTTGGACG
AAAAAATGCAAGCGAGGTTGGCAGCATTTTACGCGCCGTTTAATGACAAG
TTGTTTGAGATGTTGGCGCGACCGAGGGGGATGGCGGGGTGGGCGGGGAT
GAAAGAGGAGGGAGGGGTTCGCAATGGACAGGTACTGTCCGTAGACGAGG
CGAAGTCGGAGCAGCTTCGTACAAATGTAAGGACTGAACAAAATATGCGG
CGAAAGCGGGAATAA

Synonyms

Publications