Properties
| Property Name | Value |
|---|
| TranscriptId | 578661 |
| Track | FilteredModels2 |
| ProteinId | 578575 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:468676..470862 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1972 ID=mRNA_1972|Name=jgi.p|Nanoce1779_2|578575|organism=Nannochloropsis oceanica|type=mRNA|length=2074bp
ACAGGCGAAGGCATCATCACAAGCATTACATAACCAGCCCGCCTTCCGTC
ATCGTGCCCTCCGCATGATTATGACATTGGCCGCCTCGTCTCTCTCCATC
TCCCCCGTCCTTATTGTAGTTCTCACGGCGAGGCGTGGACAAACAGAGCT
CCAGCTCCAAGCGCACGCGTGCCTCGCGTTTCAAGCTTGGGCCTAACGTC
TCCCCCCGGGCATTCCACCTGAGTTTTTCCTGCCCAGGACTTGGTAAGCA
AAGCACCGTCTCCAACCCCGAGTCACGGCCCGACCTGCTCAAGAAAAAGG
CGCAGAGGCCAGTCGTTCCGGTTCGTTATTTTCTTAAAAACAACCAGCTC
AGGCCAGCCAGCACTAGTTGGCAGCAGGAGGACTACCAAGAGCAGCAGTC
GACAGCAGCAGCACCAACAGCACTTAGAGAAGTAGAAACAGCAGCACCGA
CACACAAACAATGCCTATGATGGACCCTACCGACTATAAGGCGGCCAAAG
AAGCTTTCGTCTCCAACCTGAACGGCACGAGTCTCTACGAAATCACGTTA
GTCACCCTCCCCCTCCCCCTCGCCCTTTGGGCCTACACCGAGCTTCGAGC
CCTCCGCCTCATCTACTCCAAACCCACCCCCGGCCTCCTCCTCGCCTTCT
GTTACGAGTTCACCCTCCTTATTCTCCCCCAAGTCATCGCGCAGTGTCTT
CCAAACGCAACCCTCTGGGTGTTACTGGTCTTGTTTGTCATTGCGGTGGT
TTGTCGGGCCATCGTGCAGGCCTCGCGGGAACCGGCCTTGAAAAGCCAAT
GGCGGCACGACCGAGCGGTCCGTCTCGTCTCTTCCCATGCCCGGAACTAC
CTGAGCAACTACCGTGCCGGGGTTATGCTCACCTCCTCCATCGCCATCCT
AGCCGTCGATTTTACCATATTTCCCCGTCGCTTCGGGAAAACCGAGGCAT
TCGGCACAAGTTTAATGGATCTAGGTGTCGGCTGCTTCATCTTCTCCAGT
GGCTTCTGCTCACGTGCTGCAAGACTGTTCCACCATCACAGCGAGGCCGC
CCCTGGAGCAGCAGCAGCAGCAGGAGTAAGTGGTGTAGTCATAACAGACG
ATTTGTACCCACAGGAAGGGAGAAAAGGAGGAGGGCATGGGGGGGTAAGC
CCCCCAAATAGTAGTAGCCGTTTCTTCCGTTTCTCCAAAAGAGCGGCCAT
GTGGCGCACAAGCAAGCGCTGTCTTCCCCTTCTTCTGTTGGGCTTGGGTA
GAATCCTAGCGAATCGCTATGTAGATTACCAGGAGCACGTGAGTGAGTAC
GGGAAACGCTGGAATTTTTTCTTGACTTTAGCAGTGATCCACTTGGCGGC
TACTGCTTTGCACACCGTGTTCCCCCACAAAGCGTTATTCCCTCTGGCGA
TAATCGTGTTGGTCTTGTACCAGATGCAGTTGTCAGCGGGTGGGTTGACG
GAGTATATACTCGAGGCACCGAGGGAGGGAGGGTTCATGAGGGAGAACAG
AGAGGGTGTGTGTGGTGTGATTGGGTTCTTGTGCCTGTATTTGATAGGCG
AGCAGATAGGGACGTGGACTGTCTGGACTATGGGGGTTGTTGGGGGGGGA
ACGAAGACGACTGAGGCGGAGGCCAGACGGGCGTTGTTGCATTTGGTGGT
TTTGGATGCGGGGTTGTGGCTGGCGGCAGCTGCGACCAGTTCTGCCGTGC
AGCCTATTTCGAGACGGTTGGTTAATATGAGCTATGTGATGTGGTCGGCA
GCGTACAACGTGATGGTGGTGACATTTTTATTTGCGGTGGATGAGTTTGC
GTCTATGGCGGCGACATCACGGTTGCTTGGCGCGGTTAATCGGAATCAGT
TGGCGTTTTTTATTTGTGCGAACTTGTTGACAGGAGCGATAAATTTGAGC
ATATACACGCTGTATGCAAGCCCTGTAGTGGCTTGGGGGGTGATTGGGAC
GTATGTGCTGGTGTTAATGCTGGCCTTTGTGTTGGTGGATCGGGCGTTTA
ATGTCACGCTGAAGTTTTGGTAGTTAATGGGGAAGAGGTGGGAATGGAAG
GGGGGAGGAGGAGGAAGGGGGGTA back to topprotein sequence of jgi.p|Nanoce1779_2|578575 >mRNA_1972-protein ID=mRNA_1972-protein|Name=jgi.p|Nanoce1779_2|578575|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MPMMDPTDYKAAKEAFVSNLNGTSLYEITLVTLPLPLALWAYTELRALRL
IYSKPTPGLLLAFCYEFTLLILPQVIAQCLPNATLWVLLVLFVIAVVCRA
IVQASREPALKSQWRHDRAVRLVSSHARNYLSNYRAGVMLTSSIAILAVD
FTIFPRRFGKTEAFGTSLMDLGVGCFIFSSGFCSRAARLFHHHSEAAPGA
AAAAGVSGVVITDDLYPQEGRKGGGHGGVSPPNSSSRFFRFSKRAAMWRT
SKRCLPLLLLGLGRILANRYVDYQEHVSEYGKRWNFFLTLAVIHLAATAL
HTVFPHKALFPLAIIVLVLYQMQLSAGGLTEYILEAPREGGFMRENREGV
CGVIGFLCLYLIGEQIGTWTVWTMGVVGGGTKTTEAEARRALLHLVVLDA
GLWLAAAATSSAVQPISRRLVNMSYVMWSAAYNVMVVTFLFAVDEFASMA
ATSRLLGAVNRNQLAFFICANLLTGAINLSIYTLYASPVVAWGVIGTYVL
VLMLAFVLVDRAFNVTLKFW* back to topmRNA from alignment at scaffold_4:468676..470862- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1972 ID=mRNA_1972|Name=jgi.p|Nanoce1779_2|578575|organism=Nannochloropsis oceanica|type=mRNA|length=2187bp|location=Sequence derived from alignment at scaffold_4:468676..470862- (Nannochloropsis oceanica)
ACAGGCGAAGGCATCATCACAAGCATTACATAACCAGCCCGCCTTCCGTC
ATCGTGCCCTCCGCATGATTATGACATTGGCCGCCTCGTCTCTCTCCATC
TCCCCCGTCCTTATTGTAGTTCTCACGGCGAGGCGTGGACAAACAGAGCT
CCAGCTCCAAGCGCACGCGTGCCTCGCGTTTCAAGCTTGGGCCTAACGTC
TCCCCCCGGGCATTCCACCTGAGTTTTTCCTGCCCAGGACTTGGTAAGCA
AAGCACCGTCTCCAACCCCGAGTCACGGCCCGACCTGCTCAAGAAAAAGG
CGCAGAGGCCAGTCGTTCCGGTTCGTTATTTTCTTAAAAACAACCAGCTC
AGGCCAGCCAGCACTAGTTGGCAGCAGGAGGACTACCAAGAGCAGCAGTC
GACAGCAGCAGCACCAACAGCACTTAGAGAAGTAGAAACAGCAGCACCGA
CACACAAACAATGCCTATGATGGACCCTACCGACTATAAGGCGGCCAAAG
AAGCTTTCGTCTCCAACCTGAACGGCACGAGTCTCTACGAAATCACGTTA
GTCACCCTCCCCCTCCCCCTCGCCCTTTGGGCCTACACCGAGCTTCGAGC
CCTCCGCCTCATCTACTCCAAACCCACCCCCGGCCTCCTCCTCGCCTTCT
GTTACGAGTTCACCCTCCTTATTCTCCCCCAAGTCATCGCGCAGTGTCTT
CCAAACGCAACCCTCTGGGTGTTACTGGTCTTGTTTGTCATTGCGGTGGT
TTGTCGGGCCATCGTGCAGGCCTCGCGGGAACCGGCCTTGAAAAGCCAAT
GGCGGCACGACCGAGCGGGTAAGCTTATTCGTATTCATTATTAGACTCTC
TACATTCAGTTTCATTTGGCAACATTTTTGACCATGTACCTTCCACCCTC
ATCCACTTTCCCCCTTCCCCAAAACCAATAGTCCGTCTCGTCTCTTCCCA
TGCCCGGAACTACCTGAGCAACTACCGTGCCGGGGTTATGCTCACCTCCT
CCATCGCCATCCTAGCCGTCGATTTTACCATATTTCCCCGTCGCTTCGGG
AAAACCGAGGCATTCGGCACAAGTTTAATGGATCTAGGTGTCGGCTGCTT
CATCTTCTCCAGTGGCTTCTGCTCACGTGCTGCAAGACTGTTCCACCATC
ACAGCGAGGCCGCCCCTGGAGCAGCAGCAGCAGCAGGAGTAAGTGGTGTA
GTCATAACAGACGATTTGTACCCACAGGAAGGGAGAAAAGGAGGAGGGCA
TGGGGGGGTAAGCCCCCCAAATAGTAGTAGCCGTTTCTTCCGTTTCTCCA
AAAGAGCGGCCATGTGGCGCACAAGCAAGCGCTGTCTTCCCCTTCTTCTG
TTGGGCTTGGGTAGAATCCTAGCGAATCGCTATGTAGATTACCAGGAGCA
CGTGAGTGAGTACGGGAAACGCTGGAATTTTTTCTTGACTTTAGCAGTGA
TCCACTTGGCGGCTACTGCTTTGCACACCGTGTTCCCCCACAAAGCGTTA
TTCCCTCTGGCGATAATCGTGTTGGTCTTGTACCAGATGCAGTTGTCAGC
GGGTGGGTTGACGGAGTATATACTCGAGGCACCGAGGGAGGGAGGGTTCA
TGAGGGAGAACAGAGAGGGTGTGTGTGGTGTGATTGGGTTCTTGTGCCTG
TATTTGATAGGCGAGCAGATAGGGACGTGGACTGTCTGGACTATGGGGGT
TGTTGGGGGGGGAACGAAGACGACTGAGGCGGAGGCCAGACGGGCGTTGT
TGCATTTGGTGGTTTTGGATGCGGGGTTGTGGCTGGCGGCAGCTGCGACC
AGTTCTGCCGTGCAGCCTATTTCGAGACGGTTGGTTAATATGAGCTATGT
GATGTGGTCGGCAGCGTACAACGTGATGGTGGTGACATTTTTATTTGCGG
TGGATGAGTTTGCGTCTATGGCGGCGACATCACGGTTGCTTGGCGCGGTT
AATCGGAATCAGTTGGCGTTTTTTATTTGTGCGAACTTGTTGACAGGAGC
GATAAATTTGAGCATATACACGCTGTATGCAAGCCCTGTAGTGGCTTGGG
GGGTGATTGGGACGTATGTGCTGGTGTTAATGCTGGCCTTTGTGTTGGTG
GATCGGGCGTTTAATGTCACGCTGAAGTTTTGGTAGTTAATGGGGAAGAG
GTGGGAATGGAAGGGGGGAGGAGGAGGAAGGGGGGTA back to topCoding sequence (CDS) from alignment at scaffold_4:468676..470862- >mRNA_1972 ID=mRNA_1972|Name=jgi.p|Nanoce1779_2|578575|organism=Nannochloropsis oceanica|type=CDS|length=3126bp|location=Sequence derived from alignment at scaffold_4:468676..470862- (Nannochloropsis oceanica)
TCCGTCTCGTCTCTTCCCATGCCCGGAACTACCTGAGCAACTACCGTGCC
GGGGTTATGCTCACCTCCTCCATCGCCATCCTAGCCGTCGATTTTACCAT
ATTTCCCCGTCGCTTCGGGAAAACCGAGGCATTCGGCACAAGTTTAATGG
ATCTAGGTGTCGGCTGCTTCATCTTCTCCAGTGGCTTCTGCTCACGTGCT
GCAAGACTGTTCCACCATCACAGCGAGGCCGCCCCTGGAGCAGCAGCAGC
AGCAGGAGTAAGTGGTGTAGTCATAACAGACGATTTGTACCCACAGGAAG
GGAGAAAAGGAGGAGGGCATGGGGGGGTAAGCCCCCCAAATAGTAGTAGC
CGTTTCTTCCGTTTCTCCAAAAGAGCGGCCATGTGGCGCACAAGCAAGCG
CTGTCTTCCCCTTCTTCTGTTGGGCTTGGGTAGAATCCTAGCGAATCGCT
ATGTAGATTACCAGGAGCACGTGAGTGAGTACGGGAAACGCTGGAATTTT
TTCTTGACTTTAGCAGTGATCCACTTGGCGGCTACTGCTTTGCACACCGT
GTTCCCCCACAAAGCGTTATTCCCTCTGGCGATAATCGTGTTGGTCTTGT
ACCAGATGCAGTTGTCAGCGGGTGGGTTGACGGAGTATATACTCGAGGCA
CCGAGGGAGGGAGGGTTCATGAGGGAGAACAGAGAGGGTGTGTGTGGTGT
GATTGGGTTCTTGTGCCTGTATTTGATAGGCGAGCAGATAGGGACGTGGA
CTGTCTGGACTATGGGGGTTGTTGGGGGGGGAACGAAGACGACTGAGGCG
GAGGCCAGACGGGCGTTGTTGCATTTGGTGGTTTTGGATGCGGGGTTGTG
GCTGGCGGCAGCTGCGACCAGTTCTGCCGTGCAGCCTATTTCGAGACGGT
TGGTTAATATGAGCTATGTGATGTGGTCGGCAGCGTACAACGTGATGGTG
GTGACATTTTTATTTGCGGTGGATGAGTTTGCGTCTATGGCGGCGACATC
ACGGTTGCTTGGCGCGGTTAATCGGAATCAGTTGGCGTTTTTTATTTGTG
CGAACTTGTTGACAGGAGCGATAAATTTGAGCATATACACGCTGTATGCA
AGCCCTGTAGTGGCTTGGGGGGTGATTGGGACGTATGTGCTGGTGTTAAT
GCTGGCCTTTGTGTTGGTGGATCGGGCGTTTAATGTCACGCTGAAGTTTT
GGTAGATGCCTATGATGGACCCTACCGACTATAAGGCGGCCAAAGAAGCT
TTCGTCTCCAACCTGAACGGCACGAGTCTCTACGAAATCACGTTAGTCAC
CCTCCCCCTCCCCCTCGCCCTTTGGGCCTACACCGAGCTTCGAGCCCTCC
GCCTCATCTACTCCAAACCCACCCCCGGCCTCCTCCTCGCCTTCTGTTAC
GAGTTCACCCTCCTTATTCTCCCCCAAGTCATCGCGCAGTGTCTTCCAAA
CGCAACCCTCTGGGTGTTACTGGTCTTGTTTGTCATTGCGGTGGTTTGTC
GGGCCATCGTGCAGGCCTCGCGGGAACCGGCCTTGAAAAGCCAATGGCGG
CACGACCGAGCGGTCCGTCTCGTCTCTTCCCATGCCCGGAACTACCTGAG
CAACTACCGTGCCGGGGTTATGCTCACCTCCTCCATCGCCATCCTAGCCG
TCGATTTTACCATATTTCCCCGTCGCTTCGGGAAAACCGAGGCATTCGGC
ACAAGTTTAATGGATCTAGGTGTCGGCTGCTTCATCTTCTCCAGTGGCTT
CTGCTCACGTGCTGCAAGACTGTTCCACCATCACAGCGAGGCCGCCCCTG
GAGCAGCAGCAGCAGCAGGAGTAAGTGGTGTAGTCATAACAGACGATTTG
TACCCACAGGAAGGGAGAAAAGGAGGAGGGCATGGGGGGGTAAGCCCCCC
AAATAGTAGTAGCCGTTTCTTCCGTTTCTCCAAAAGAGCGGCCATGTGGC
GCACAAGCAAGCGCTGTCTTCCCCTTCTTCTGTTGGGCTTGGGTAGAATC
CTAGCGAATCGCTATGTAGATTACCAGGAGCACGTGAGTGAGTACGGGAA
ACGCTGGAATTTTTTCTTGACTTTAGCAGTGATCCACTTGGCGGCTACTG
CTTTGCACACCGTGTTCCCCCACAAAGCGTTATTCCCTCTGGCGATAATC
GTGTTGGTCTTGTACCAGATGCAGTTGTCAGCGGGTGGGTTGACGGAGTA
TATACTCGAGGCACCGAGGGAGGGAGGGTTCATGAGGGAGAACAGAGAGG
GTGTGTGTGGTGTGATTGGGTTCTTGTGCCTGTATTTGATAGGCGAGCAG
ATAGGGACGTGGACTGTCTGGACTATGGGGGTTGTTGGGGGGGGAACGAA
GACGACTGAGGCGGAGGCCAGACGGGCGTTGTTGCATTTGGTGGTTTTGG
ATGCGGGGTTGTGGCTGGCGGCAGCTGCGACCAGTTCTGCCGTGCAGCCT
ATTTCGAGACGGTTGGTTAATATGAGCTATGTGATGTGGTCGGCAGCGTA
CAACGTGATGGTGGTGACATTTTTATTTGCGGTGGATGAGTTTGCGTCTA
TGGCGGCGACATCACGGTTGCTTGGCGCGGTTAATCGGAATCAGTTGGCG
TTTTTTATTTGTGCGAACTTGTTGACAGGAGCGATAAATTTGAGCATATA
CACGCTGTATGCAAGCCCTGTAGTGGCTTGGGGGGTGATTGGGACGTATG
TGCTGGTGTTAATGCTGGCCTTTGTGTTGGTGGATCGGGCGTTTAATGTC
ACGCTGAAGTTTTGGTAGATGCCTATGATGGACCCTACCGACTATAAGGC
GGCCAAAGAAGCTTTCGTCTCCAACCTGAACGGCACGAGTCTCTACGAAA
TCACGTTAGTCACCCTCCCCCTCCCCCTCGCCCTTTGGGCCTACACCGAG
CTTCGAGCCCTCCGCCTCATCTACTCCAAACCCACCCCCGGCCTCCTCCT
CGCCTTCTGTTACGAGTTCACCCTCCTTATTCTCCCCCAAGTCATCGCGC
AGTGTCTTCCAAACGCAACCCTCTGGGTGTTACTGGTCTTGTTTGTCATT
GCGGTGGTTTGTCGGGCCATCGTGCAGGCCTCGCGGGAACCGGCCTTGAA
AAGCCAATGGCGGCACGACCGAGCGG back to top
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