jgi.p|Nanoce1779_2|578564, mRNA_1968 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578564
Unique NamemRNA_1968
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1933
Alignment locationscaffold_4:460944..462876 -

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Properties
Property NameValue
TranscriptId578650
TrackFilteredModels2
ProteinId578564
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:460944..462876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578564gene_1968Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578564mRNA_1968-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1968CDS_1968Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1968 ID=mRNA_1968|Name=jgi.p|Nanoce1779_2|578564|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp
CAGGACAGTATGTCATGGTGGTGGTGGTGGCAGTCATCCGCGGCGGAGCG
ACTACGGAGGAAAGCAGCAGCTAAGCGCCTCCAATGCGATGCTCAAAGTG
CCTTGCCTCTGCCCCCCCTGGCGCCTGGGCTGACCGCGGCCAAGGAGAAC
GAGATAGCAGTGGCATCAACAGTGGAGGAGCTGGTGACACGAGTCAAGGC
CGGGACGCTGTCATCGTACGAGGTGGTGAGTGTGATGGTCAAGCGTGCAC
GGGAGTTTGGGGGGGTAAAGGGCGTGAACGCCGTGACGGAGGAGTTTTAT
GACGGTGCGTTGACCGAGGCCCGGCAAAAGGACAGACAACTGGCTCTAAC
ACGGCCCGGCTGCAGCAGCAAGAATCTCGGCTTGCTAGAGGGAATGCCGA
TCAGTATCAAAGATCACATTAATGTTAAGGGCAAAGACTCGACAACTGGC
GCCGCCTGCCGTTGTTTTCAACCCGTGCTCCAAGACGCCCTGGTCGTCGA
GCTATTGCGGGACGCAGGGGCAATTATCCTCTGCAAGACCAACGTGCCTC
AATGTCTAATGCTTCCCGAGACCACCAACAATATTTGGGGAACGACAGTT
ACACCCTGGGACCTGAGACGGACAGCGGGCGGAAGCAGTGGAGGGGAAGC
TGCCTTGATTGCGGCGCGGGGAAGCTTGCTCGGTGTGGGTACGGATATTG
GAGGGAGCTGTCGTGTGCCCGCTATGTTCAGTGGCTGTGTAGGGTTTAAG
CCGACACCCGCGCGGGTTTCGGATCAAGGACTCACGATGCCTTTCCCAGG
GGGGAAGATAGGGATGAAGGCCGTGAAAGTCACGGCGGGGCCACTGGCCA
ACCGGGTAGAGGACGTGGCATTGATGTGTGAGGCGTGGTGGGTTGAGAAA
ATGTGGCTGCGGGACCCGTTTGTCGTGCCTTTGCCGTTTGATCATATTGC
CTACAGGGAAGGTCTGGATAAGACGCAGCAGCGGCAGCAAGAGGAGAAGG
AGCCGCAGCAAGGTTGTGGTGGCGGCTTGGCACATGCGAAGAAATTTCGT
CTCGGTTGGTTCATGACAGACGACTTCTTCGAGCCCTCCCGGGCAGGAAA
GCGGGCGATGGGTCTGGCGAAGCAAGCATTGGAGGCGACAGGAAAATACG
AGCTGGTGGAATTGAAATTAGATAAGTCGACGAATGGCTGGGAGGCTGTC
AGGTTGTTCTATAATATTTTAACGGCGGAGGGGGGCATGAAGAGTTATGT
GGAGGGATTGGAGGGAGAGCCTCTTATTGGTGCATATCGGAAGATGCATT
TCGCTACATCTCTGTGGGATTGGGTACGTCCATTTATGAATTGTGTGTTG
TATCTGTTGGATGAGAAGAGAATGAGGTTTATGGTGAAGGGGTTTAGGAG
GGAGGGGGTGCCCACGCGGGACTACTGGCAGTACTGTAAGGAGCTGCAGG
TGTACCAGGAGGCATGGGTGCATATGCTCCACGCACAGGACCTGCAAGGC
TTTTTGTGCCCGGGGGTGGCCTTGCCTGCCTTTTGCAATGGAGCGTCTCA
GTCGGTGGAGAGCGCCTGTACTTACACCTTCTTTTTGAATCTCCTACATT
TCCCTGCGGGCATGGTGCCTGTCACAAGGGTCCGTGAGGACGAGGCTTGC
TATCCTTTGAAGGAGCTACCACGGGTGCAGAGAGACTCCATAGCGCGTGC
AGCTGCAAAGACGATGCAGGGGAGTGCCGGCTTACCGGTGGGTGTTCAGG
TGGCCTTTTTGCCGTTTCAAGATGAGATGTGTTTACATGTGATGAAGGAT
TTGCAGGATGCGGTGAAATTTAGAGACTTGCCGGCGTTGGCGAAGCGAAG
GTTATTTTGATACGGAAGTATAGTAGTAGTAGGAGGATGGGAATAGAGAA
GGGAGGGGCCAAAGAAATAGACGAACAATGGAA
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protein sequence of jgi.p|Nanoce1779_2|578564

>mRNA_1968-protein ID=mRNA_1968-protein|Name=jgi.p|Nanoce1779_2|578564|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MSWWWWWQSSAAERLRRKAAAKRLQCDAQSALPLPPLAPGLTAAKENEIA
VASTVEELVTRVKAGTLSSYEVVSVMVKRAREFGGVKGVNAVTEEFYDGA
LTEARQKDRQLALTRPGCSSKNLGLLEGMPISIKDHINVKGKDSTTGAAC
RCFQPVLQDALVVELLRDAGAIILCKTNVPQCLMLPETTNNIWGTTVTPW
DLRRTAGGSSGGEAALIAARGSLLGVGTDIGGSCRVPAMFSGCVGFKPTP
ARVSDQGLTMPFPGGKIGMKAVKVTAGPLANRVEDVALMCEAWWVEKMWL
RDPFVVPLPFDHIAYREGLDKTQQRQQEEKEPQQGCGGGLAHAKKFRLGW
FMTDDFFEPSRAGKRAMGLAKQALEATGKYELVELKLDKSTNGWEAVRLF
YNILTAEGGMKSYVEGLEGEPLIGAYRKMHFATSLWDWVRPFMNCVLYLL
DEKRMRFMVKGFRREGVPTRDYWQYCKELQVYQEAWVHMLHAQDLQGFLC
PGVALPAFCNGASQSVESACTYTFFLNLLHFPAGMVPVTRVREDEACYPL
KELPRVQRDSIARAAAKTMQGSAGLPVGVQVAFLPFQDEMCLHVMKDLQD
AVKFRDLPALAKRRLF*
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mRNA from alignment at scaffold_4:460944..462876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1968 ID=mRNA_1968|Name=jgi.p|Nanoce1779_2|578564|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp|location=Sequence derived from alignment at scaffold_4:460944..462876- (Nannochloropsis oceanica)
CAGGACAGTATGTCATGGTGGTGGTGGTGGCAGTCATCCGCGGCGGAGCG
ACTACGGAGGAAAGCAGCAGCTAAGCGCCTCCAATGCGATGCTCAAAGTG
CCTTGCCTCTGCCCCCCCTGGCGCCTGGGCTGACCGCGGCCAAGGAGAAC
GAGATAGCAGTGGCATCAACAGTGGAGGAGCTGGTGACACGAGTCAAGGC
CGGGACGCTGTCATCGTACGAGGTGGTGAGTGTGATGGTCAAGCGTGCAC
GGGAGTTTGGGGGGGTAAAGGGCGTGAACGCCGTGACGGAGGAGTTTTAT
GACGGTGCGTTGACCGAGGCCCGGCAAAAGGACAGACAACTGGCTCTAAC
ACGGCCCGGCTGCAGCAGCAAGAATCTCGGCTTGCTAGAGGGAATGCCGA
TCAGTATCAAAGATCACATTAATGTTAAGGGCAAAGACTCGACAACTGGC
GCCGCCTGCCGTTGTTTTCAACCCGTGCTCCAAGACGCCCTGGTCGTCGA
GCTATTGCGGGACGCAGGGGCAATTATCCTCTGCAAGACCAACGTGCCTC
AATGTCTAATGCTTCCCGAGACCACCAACAATATTTGGGGAACGACAGTT
ACACCCTGGGACCTGAGACGGACAGCGGGCGGAAGCAGTGGAGGGGAAGC
TGCCTTGATTGCGGCGCGGGGAAGCTTGCTCGGTGTGGGTACGGATATTG
GAGGGAGCTGTCGTGTGCCCGCTATGTTCAGTGGCTGTGTAGGGTTTAAG
CCGACACCCGCGCGGGTTTCGGATCAAGGACTCACGATGCCTTTCCCAGG
GGGGAAGATAGGGATGAAGGCCGTGAAAGTCACGGCGGGGCCACTGGCCA
ACCGGGTAGAGGACGTGGCATTGATGTGTGAGGCGTGGTGGGTTGAGAAA
ATGTGGCTGCGGGACCCGTTTGTCGTGCCTTTGCCGTTTGATCATATTGC
CTACAGGGAAGGTCTGGATAAGACGCAGCAGCGGCAGCAAGAGGAGAAGG
AGCCGCAGCAAGGTTGTGGTGGCGGCTTGGCACATGCGAAGAAATTTCGT
CTCGGTTGGTTCATGACAGACGACTTCTTCGAGCCCTCCCGGGCAGGAAA
GCGGGCGATGGGTCTGGCGAAGCAAGCATTGGAGGCGACAGGAAAATACG
AGCTGGTGGAATTGAAATTAGATAAGTCGACGAATGGCTGGGAGGCTGTC
AGGTTGTTCTATAATATTTTAACGGCGGAGGGGGGCATGAAGAGTTATGT
GGAGGGATTGGAGGGAGAGCCTCTTATTGGTGCATATCGGAAGATGCATT
TCGCTACATCTCTGTGGGATTGGGTACGTCCATTTATGAATTGTGTGTTG
TATCTGTTGGATGAGAAGAGAATGAGGTTTATGGTGAAGGGGTTTAGGAG
GGAGGGGGTGCCCACGCGGGACTACTGGCAGTACTGTAAGGAGCTGCAGG
TGTACCAGGAGGCATGGGTGCATATGCTCCACGCACAGGACCTGCAAGGC
TTTTTGTGCCCGGGGGTGGCCTTGCCTGCCTTTTGCAATGGAGCGTCTCA
GTCGGTGGAGAGCGCCTGTACTTACACCTTCTTTTTGAATCTCCTACATT
TCCCTGCGGGCATGGTGCCTGTCACAAGGGTCCGTGAGGACGAGGCTTGC
TATCCTTTGAAGGAGCTACCACGGGTGCAGAGAGACTCCATAGCGCGTGC
AGCTGCAAAGACGATGCAGGGGAGTGCCGGCTTACCGGTGGGTGTTCAGG
TGGCCTTTTTGCCGTTTCAAGATGAGATGTGTTTACATGTGATGAAGGAT
TTGCAGGATGCGGTGAAATTTAGAGACTTGCCGGCGTTGGCGAAGCGAAG
GTTATTTTGATACGGAAGTATAGTAGTAGTAGGAGGATGGGAATAGAGAA
GGGAGGGGCCAAAGAAATAGACGAACAATGGAA
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Coding sequence (CDS) from alignment at scaffold_4:460944..462876-

>mRNA_1968 ID=mRNA_1968|Name=jgi.p|Nanoce1779_2|578564|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at scaffold_4:460944..462876- (Nannochloropsis oceanica)
ATGTCATGGTGGTGGTGGTGGCAGTCATCCGCGGCGGAGCGACTACGGAG
GAAAGCAGCAGCTAAGCGCCTCCAATGCGATGCTCAAAGTGCCTTGCCTC
TGCCCCCCCTGGCGCCTGGGCTGACCGCGGCCAAGGAGAACGAGATAGCA
GTGGCATCAACAGTGGAGGAGCTGGTGACACGAGTCAAGGCCGGGACGCT
GTCATCGTACGAGGTGGTGAGTGTGATGGTCAAGCGTGCACGGGAGTTTG
GGGGGGTAAAGGGCGTGAACGCCGTGACGGAGGAGTTTTATGACGGTGCG
TTGACCGAGGCCCGGCAAAAGGACAGACAACTGGCTCTAACACGGCCCGG
CTGCAGCAGCAAGAATCTCGGCTTGCTAGAGGGAATGCCGATCAGTATCA
AAGATCACATTAATGTTAAGGGCAAAGACTCGACAACTGGCGCCGCCTGC
CGTTGTTTTCAACCCGTGCTCCAAGACGCCCTGGTCGTCGAGCTATTGCG
GGACGCAGGGGCAATTATCCTCTGCAAGACCAACGTGCCTCAATGTCTAA
TGCTTCCCGAGACCACCAACAATATTTGGGGAACGACAGTTACACCCTGG
GACCTGAGACGGACAGCGGGCGGAAGCAGTGGAGGGGAAGCTGCCTTGAT
TGCGGCGCGGGGAAGCTTGCTCGGTGTGGGTACGGATATTGGAGGGAGCT
GTCGTGTGCCCGCTATGTTCAGTGGCTGTGTAGGGTTTAAGCCGACACCC
GCGCGGGTTTCGGATCAAGGACTCACGATGCCTTTCCCAGGGGGGAAGAT
AGGGATGAAGGCCGTGAAAGTCACGGCGGGGCCACTGGCCAACCGGGTAG
AGGACGTGGCATTGATGTGTGAGGCGTGGTGGGTTGAGAAAATGTGGCTG
CGGGACCCGTTTGTCGTGCCTTTGCCGTTTGATCATATTGCCTACAGGGA
AGGTCTGGATAAGACGCAGCAGCGGCAGCAAGAGGAGAAGGAGCCGCAGC
AAGGTTGTGGTGGCGGCTTGGCACATGCGAAGAAATTTCGTCTCGGTTGG
TTCATGACAGACGACTTCTTCGAGCCCTCCCGGGCAGGAAAGCGGGCGAT
GGGTCTGGCGAAGCAAGCATTGGAGGCGACAGGAAAATACGAGCTGGTGG
AATTGAAATTAGATAAGTCGACGAATGGCTGGGAGGCTGTCAGGTTGTTC
TATAATATTTTAACGGCGGAGGGGGGCATGAAGAGTTATGTGGAGGGATT
GGAGGGAGAGCCTCTTATTGGTGCATATCGGAAGATGCATTTCGCTACAT
CTCTGTGGGATTGGGTACGTCCATTTATGAATTGTGTGTTGTATCTGTTG
GATGAGAAGAGAATGAGGTTTATGGTGAAGGGGTTTAGGAGGGAGGGGGT
GCCCACGCGGGACTACTGGCAGTACTGTAAGGAGCTGCAGGTGTACCAGG
AGGCATGGGTGCATATGCTCCACGCACAGGACCTGCAAGGCTTTTTGTGC
CCGGGGGTGGCCTTGCCTGCCTTTTGCAATGGAGCGTCTCAGTCGGTGGA
GAGCGCCTGTACTTACACCTTCTTTTTGAATCTCCTACATTTCCCTGCGG
GCATGGTGCCTGTCACAAGGGTCCGTGAGGACGAGGCTTGCTATCCTTTG
AAGGAGCTACCACGGGTGCAGAGAGACTCCATAGCGCGTGCAGCTGCAAA
GACGATGCAGGGGAGTGCCGGCTTACCGGTGGGTGTTCAGGTGGCCTTTT
TGCCGTTTCAAGATGAGATGTGTTTACATGTGATGAAGGATTTGCAGGAT
GCGGTGAAATTTAGAGACTTGCCGGCGTTGGCGAAGCGAAGGTTATTTTG
A
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Synonyms
Publications