jgi.p|Nanoce1779_2|578564, gene_1968 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578564
Unique Namegene_1968
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:460944..462876 -

Link to JBrowse

Properties
Property NameValue
TranscriptId578650
ProteinId578564
Product nameAmidase signature domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:460944..462876 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016884carbon-nitrogen ligase activity, with glutamine as amido-N-donor
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL059ncniL059Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01810NO04G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578564mRNA_1968-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578564mRNA_1968Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|578564

>mRNA_1968-protein ID=mRNA_1968-protein|Name=jgi.p|Nanoce1779_2|578564|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MSWWWWWQSSAAERLRRKAAAKRLQCDAQSALPLPPLAPGLTAAKENEIA
VASTVEELVTRVKAGTLSSYEVVSVMVKRAREFGGVKGVNAVTEEFYDGA
LTEARQKDRQLALTRPGCSSKNLGLLEGMPISIKDHINVKGKDSTTGAAC
RCFQPVLQDALVVELLRDAGAIILCKTNVPQCLMLPETTNNIWGTTVTPW
DLRRTAGGSSGGEAALIAARGSLLGVGTDIGGSCRVPAMFSGCVGFKPTP
ARVSDQGLTMPFPGGKIGMKAVKVTAGPLANRVEDVALMCEAWWVEKMWL
RDPFVVPLPFDHIAYREGLDKTQQRQQEEKEPQQGCGGGLAHAKKFRLGW
FMTDDFFEPSRAGKRAMGLAKQALEATGKYELVELKLDKSTNGWEAVRLF
YNILTAEGGMKSYVEGLEGEPLIGAYRKMHFATSLWDWVRPFMNCVLYLL
DEKRMRFMVKGFRREGVPTRDYWQYCKELQVYQEAWVHMLHAQDLQGFLC
PGVALPAFCNGASQSVESACTYTFFLNLLHFPAGMVPVTRVREDEACYPL
KELPRVQRDSIARAAAKTMQGSAGLPVGVQVAFLPFQDEMCLHVMKDLQD
AVKFRDLPALAKRRLF*
back to top
Synonyms
Publications