jgi.p|Nanoce1779_2|578302, mRNA_1884 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578302
Unique Name	mRNA_1884
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2854
Alignment location	scaffold_4:264010..266998 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578388
Track	FilteredModels2
ProteinId	578302

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:264010..266998 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578302	gene_1884	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578302	mRNA_1884-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1884	CDS_1884	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:264010..266998+
coding sequence from alignment at scaffold_4:264010..266998+

mRNA sequence

>mRNA_1884 ID=mRNA_1884|Name=jgi.p|Nanoce1779_2|578302|organism=Nannochloropsis oceanica|type=mRNA|length=2854bp
CTCAAAATTACGGCGTCATGCTCACTCTCTCTATTTCTGCTTCCGTTTTC
TCCTCCCATCTTCATTGGTTTGTAGACATGGGAAAGGTCTGCTGTCTCAT
ATTCGCGGGCGAAATCGTGGCAGATTGTATCAAGGTGAGCACTGCCTCCA
AACCTCCCTCCCCTCCTCCCTTCCTCCTTCACTGCGTGTTTGCCCACTGG
TCCCCCCATCAAGATGTTAGAGTGCGACTACCTTGATTAAGACACCCTTA
CGTCCTTGTTGCCCCTTCCCCCTTCCTTCCTTCCTCCCTCCAGCACGCCT
TCATCACCAAATTTAACGAGATCGACGCGGAATGTTACCCCAAGAGCGCC
GAGGAGCTCGCACGGGTCGTGACGTCACACAGGCGACAGACCCACGTGTC
CCTGGACCGCACGCACGTGATCTGCAAGAAGATCGGCCTCGCCCAGCTCC
CCCTCGCTGCAGTTGCCGTGCGCTTCTCGGCCATCGCCTGGTCCTTCCTT
CACACCTTCTCCTGGCCTGCCTTCATCTCGTTCACCCTCTTGCTGGTCGC
GGTTTTGTTAGTGAGCAAGATACTAGCCGGGCTGTGCGTGACCCGCTGGG
CGTGGGCGATCGAAGCGAGGGAGAGGGGGAAGAGGGAAATGAGGGCGAGG
GAGAAGGAGAGGGAGAGAGAGAGGGAGGCGGGATGTATGGGGATGGGAGG
AGATGCGGGGGGCATATCCAAGTCTCACACTCCGATGAGGTGAGGGAGGG
AGGGAAGAAAGGTTGTTGGAGAGGAGTGATGCGAGCGTGTATTTATTTCT
AGGGGCGTAATTAGGCAGGATTGGAGGAAGGGATAAGATATGCATATAGA
ATAGAGAAGCGACCAAGAAGAAGACGATTTGGAGGAAGGAGAAAAGGAAG
GAGAGAGAAGGAGAGGACTTAGCTGGTGTGGGGCTGTCATGTCATGCCTT
CCCATGTCATCATATTTATACTCCACGGATGCCACGCACACAGACGCTCC
TTATCTCTCTCAATCCCCCCTCTCTCTCTCTCCGTGGCGATGTAATTAAA
AGGTTTGAAGGAGTAACGGGTAGGAGAAAGTGGAAGGGTACGAGTGGGGG
ATAATTATTTATATAGCGAGAGTAGAGAAGTGGGTCACGCCTTGAAGCGA
TCCACTCAGCAAATCATCGGGAGGAAAAAGATAAGAAATTCTCCCTAATC
TAGAAAATCTCAATGTCTTGATTCTCGTTGCTCTTTTAAATGAGGTCCAA
TATTGACCTTTCCCCTGAGATCACGTGGAGAGGGAAAATACCCGTTCTGA
CTTTCACCACTTAAATGAAACAACATGAGTAATACCAAGAATTGGCTTTC
AGGGCTCGATGAACAATATCCCATGGCCTCGTCGGGAAGGAAGAGCTCAC
CCTTGTCGTGCGCGTAGTGTGCAAGGCGTGGAGGGAAACACGGGTACCTC
GGGGTGGGGAGGTCGGCTGGTGGGCCATATGTCTGAGGCAAATAATGGTG
TGGGGTGGAGCACATCCAACGAAGGTCAAAACATAGGCATTGCCAAACGC
CTCTATGCGCTGGATTCAATAGTTATATTCAGGGAAGAGTCCAGACAGCG
TCCGCCTACTTGAAATGCAGTAGTGAAGGGTAAGAATGTGGCCGGCCGTT
GAAAGCACCTCGGTCGACTTCGGACTCCCTATTTATTTGCCTTCCGTGTG
AGGCACAATGCACATGTCCGCTATCATCAACACAATATCAAGTCTAACGT
AAACCATATTTTTACATCCGTCGGGCAGGTGCGCTGCAGTATTCGTCAGA
AATTTCATTTGGCCGCCAAAGTATCTTCGATTGTCATCAGCACGCCGTCC
ACTTCTTCTATACCTTCTACCTGCCACCTGCCTGGCCAAACCGCTCAACA
ACATGTCCAATTGGGCGCGTCTACAGGCCAAATTTTCCACAGCTGAGAAT
GGGAGAGTCCAAAAGAGGACTGCAGCGTTGACCAAGGAAGATGCTTCTCC
CGCGGAAGGGGATTTCCTTTCTTCGCAATCGAACGGCAGGAGTGCAAAGG
GCATAGCAGGAGCAGCGAGAGCACCAGCTCAAGGTAAAAAGCGCAAGCGG
AGAGACCTATCCGAGGCCGCAGCAGTGGCAGAGAGGGCCCGGCAGGAAGC
CAAGGACAAGGAAGACAAACTCCGAAGTGTGGAGTCGCTTGCAGACGACG
TGACGGTGGTTGAAAAGGCCTTGTATGTGGGCCTGGATTGCGAGATGGTG
GGTGTGGGGGATGGAGGGAAACGAAGTGCTTTGGCCCGTGTGACAATGGT
GAATTTTGATGGCCGCGTCATTTACGACGAGCATGTTAGGCCTCGGGAGC
GCGTGACAGACTTCCGCACGTGGGTGAGTGGGGTCAAGGCCAAGCACTTA
AAGGCAGCTTTGGAACTGAAAGACTGTATCCAGCAAGTAGCTGAACTGGT
CAAGGGCAAAATCATTGTAGGGCATGCTTTAAAGAATGATTTGCAAGTCC
TCATGCTCCAGCATCCAGTGGCCATGATTAGGGATACGGCCAGGTATCGT
GCTTACATGCGTCCGCGTGGGAGGGAGGGAGGGAAGCTCCGACCGCGTAA
ACTGAAGGACCTGGCTGAGGAATGCTTGGGGATGGAGATTCAGGGAGGGA
AGCATGACTCAGGAGAGGATGCACGGGCCGCGATGCTGCTCTATCGCGCG
CAGCGAGTGGAGTGGGAGAAAGAGATTAGGAAGATGCATAAATACACAAC
TGCGGCAGCGAAGAAGCAGAAGCGCAAGGTGGGCGTGCAGGTGACGTAAA
GAAGGAATCATAAGTAGGCAGATAGATACAAAATAAACCAATTCGATGTA
CTTA

protein sequence of jgi.p|Nanoce1779_2|578302

>mRNA_1884-protein ID=mRNA_1884-protein|Name=jgi.p|Nanoce1779_2|578302|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MSNWARLQAKFSTAENGRVQKRTAALTKEDASPAEGDFLSSQSNGRSAKG
IAGAARAPAQGKKRKRRDLSEAAAVAERARQEAKDKEDKLRSVESLADDV
TVVEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRER
VTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVL
MLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGK
HDSGEDARAAMLLYRAQRVEWEKEIRKMHKYTTAAAKKQKRKVGVQVT*

mRNA from alignment at scaffold_4:264010..266998+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1884 ID=mRNA_1884|Name=jgi.p|Nanoce1779_2|578302|organism=Nannochloropsis oceanica|type=mRNA|length=2989bp|location=Sequence derived from alignment at scaffold_4:264010..266998+ (Nannochloropsis oceanica)
CTCAAAATTACGGCGTCATGCTCACTCTCTCTATTTCTGCTTCCGTTTTC
TCCTCCCATCTTCATTGGTTTGTAGACATGGGAAAGGTCTGCTGTCTCAT
ATTCGCGGGCGAAATCGTGGCAGATTGTATCAAGGTGAGCACTGCCTCCA
AACCTCCCTCCCCTCCTCCCTTCCTCCTTCACTGCGTGTTTGCCCACTGG
TCCCCCCATCAAGATGTTAGAGTGCGACTACCTTGATTAAGACACCCTTA
CGTCCTTGTTGCCCCTTCCCCCTTCCTTCCTTCCTCCCTCCAGCACGCCT
TCATCACCAAATTTAACGAGATCGACGCGGAATGTTACCCCAAGAGCGCC
GAGGAGCTCGCACGGGTCGTGACGTCACACAGGCGACAGACCCACGTGTC
CCTGGACCGCACGCACGTGATCTGCAAGAAGGTAGGGAGGGAGAGATGGC
AAGATGTGTAGATGTGATTGAGCTTTTTAATTGCCTTCTCCTTCTTCGTT
GCAGACGCGACTATCAACATCGAGCTCACGGTCTTTCCTTTCCCCTCCTT
CCCTCCCTCCCTCCAGATCGGCCTCGCCCAGCTCCCCCTCGCTGCAGTTG
CCGTGCGCTTCTCGGCCATCGCCTGGTCCTTCCTTCACACCTTCTCCTGG
CCTGCCTTCATCTCGTTCACCCTCTTGCTGGTCGCGGTTTTGTTAGTGAG
CAAGATACTAGCCGGGCTGTGCGTGACCCGCTGGGCGTGGGCGATCGAAG
CGAGGGAGAGGGGGAAGAGGGAAATGAGGGCGAGGGAGAAGGAGAGGGAG
AGAGAGAGGGAGGCGGGATGTATGGGGATGGGAGGAGATGCGGGGGGCAT
ATCCAAGTCTCACACTCCGATGAGGTGAGGGAGGGAGGGAAGAAAGGTTG
TTGGAGAGGAGTGATGCGAGCGTGTATTTATTTCTAGGGGCGTAATTAGG
CAGGATTGGAGGAAGGGATAAGATATGCATATAGAATAGAGAAGCGACCA
AGAAGAAGACGATTTGGAGGAAGGAGAAAAGGAAGGAGAGAGAAGGAGAG
GACTTAGCTGGTGTGGGGCTGTCATGTCATGCCTTCCCATGTCATCATAT
TTATACTCCACGGATGCCACGCACACAGACGCTCCTTATCTCTCTCAATC
CCCCCTCTCTCTCTCTCCGTGGCGATGTAATTAAAAGGTTTGAAGGAGTA
ACGGGTAGGAGAAAGTGGAAGGGTACGAGTGGGGGATAATTATTTATATA
GCGAGAGTAGAGAAGTGGGTCACGCCTTGAAGCGATCCACTCAGCAAATC
ATCGGGAGGAAAAAGATAAGAAATTCTCCCTAATCTAGAAAATCTCAATG
TCTTGATTCTCGTTGCTCTTTTAAATGAGGTCCAATATTGACCTTTCCCC
TGAGATCACGTGGAGAGGGAAAATACCCGTTCTGACTTTCACCACTTAAA
TGAAACAACATGAGTAATACCAAGAATTGGCTTTCAGGGCTCGATGAACA
ATATCCCATGGCCTCGTCGGGAAGGAAGAGCTCACCCTTGTCGTGCGCGT
AGTGTGCAAGGCGTGGAGGGAAACACGGGTACCTCGGGGTGGGGAGGTCG
GCTGGTGGGCCATATGTCTGAGGCAAATAATGGTGTGGGGTGGAGCACAT
CCAACGAAGGTCAAAACATAGGCATTGCCAAACGCCTCTATGCGCTGGAT
TCAATAGTTATATTCAGGGAAGAGTCCAGACAGCGTCCGCCTACTTGAAA
TGCAGTAGTGAAGGGTAAGAATGTGGCCGGCCGTTGAAAGCACCTCGGTC
GACTTCGGACTCCCTATTTATTTGCCTTCCGTGTGAGGCACAATGCACAT
GTCCGCTATCATCAACACAATATCAAGTCTAACGTAAACCATATTTTTAC
ATCCGTCGGGCAGGTGCGCTGCAGTATTCGTCAGAAATTTCATTTGGCCG
CCAAAGTATCTTCGATTGTCATCAGCACGCCGTCCACTTCTTCTATACCT
TCTACCTGCCACCTGCCTGGCCAAACCGCTCAACAACATGTCCAATTGGG
CGCGTCTACAGGCCAAATTTTCCACAGCTGAGAATGGGAGAGTCCAAAAG
AGGACTGCAGCGTTGACCAAGGAAGATGCTTCTCCCGCGGAAGGGGATTT
CCTTTCTTCGCAATCGAACGGCAGGAGTGCAAAGGGCATAGCAGGAGCAG
CGAGAGCACCAGCTCAAGGTAAAAAGCGCAAGCGGAGAGACCTATCCGAG
GCCGCAGCAGTGGCAGAGAGGGCCCGGCAGGAAGCCAAGGACAAGGAAGA
CAAACTCCGAAGTGTGGAGTCGCTTGCAGACGACGTGACGGTGGTTGAAA
AGGCCTTGTATGTGGGCCTGGATTGCGAGATGGTGGGTGTGGGGGATGGA
GGGAAACGAAGTGCTTTGGCCCGTGTGACAATGGTGAATTTTGATGGCCG
CGTCATTTACGACGAGCATGTTAGGCCTCGGGAGCGCGTGACAGACTTCC
GCACGTGGGTGAGTGGGGTCAAGGCCAAGCACTTAAAGGCAGCTTTGGAA
CTGAAAGACTGTATCCAGCAAGTAGCTGAACTGGTCAAGGGCAAAATCAT
TGTAGGGCATGCTTTAAAGAATGATTTGCAAGTCCTCATGCTCCAGCATC
CAGTGGCCATGATTAGGGATACGGCCAGGTATCGTGCTTACATGCGTCCG
CGTGGGAGGGAGGGAGGGAAGCTCCGACCGCGTAAACTGAAGGACCTGGC
TGAGGAATGCTTGGGGATGGAGATTCAGGGAGGGAAGCATGACTCAGGAG
AGGATGCACGGGCCGCGATGCTGCTCTATCGCGCGCAGCGAGTGGAGTGG
GAGAAAGAGATTAGGAAGATGCATAAATACACAACTGCGGCAGCGAAGAA
GCAGAAGCGCAAGGTGGGCGTGCAGGTGACGTAAAGAAGGAATCATAAGT
AGGCAGATAGATACAAAATAAACCAATTCGATGTACTTA

Coding sequence (CDS) from alignment at scaffold_4:264010..266998+

>mRNA_1884 ID=mRNA_1884|Name=jgi.p|Nanoce1779_2|578302|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at scaffold_4:264010..266998+ (Nannochloropsis oceanica)
ATGTCCAATTGGGCGCGTCTACAGGCCAAATTTTCCACAGCTGAGAATGG
GAGAGTCCAAAAGAGGACTGCAGCGTTGACCAAGGAAGATGCTTCTCCCG
CGGAAGGGGATTTCCTTTCTTCGCAATCGAACGGCAGGAGTGCAAAGGGC
ATAGCAGGAGCAGCGAGAGCACCAGCTCAAGGTAAAAAGCGCAAGCGGAG
AGACCTATCCGAGGCCGCAGCAGTGGCAGAGAGGGCCCGGCAGGAAGCCA
AGGACAAGGAAGACAAACTCCGAAGTGTGGAGTCGCTTGCAGACGACGTG
ACGGTGGTTGAAAAGGCCTTGTATGTGGGCCTGGATTGCGAGATGGTGGG
TGTGGGGGATGGAGGGAAACGAAGTGCTTTGGCCCGTGTGACAATGGTGA
ATTTTGATGGCCGCGTCATTTACGACGAGCATGTTAGGCCTCGGGAGCGC
GTGACAGACTTCCGCACGTGGGTGAGTGGGGTCAAGGCCAAGCACTTAAA
GGCAGCTTTGGAACTGAAAGACTGTATCCAGCAAGTAGCTGAACTGGTCA
AGGGCAAAATCATTGTAGGGCATGCTTTAAAGAATGATTTGCAAGTCCTC
ATGCTCCAGCATCCAGTGGCCATGATTAGGGATACGGCCAGGTATCGTGC
TTACATGCGTCCGCGTGGGAGGGAGGGAGGGAAGCTCCGACCGCGTAAAC
TGAAGGACCTGGCTGAGGAATGCTTGGGGATGGAGATTCAGGGAGGGAAG
CATGACTCAGGAGAGGATGCACGGGCCGCGATGCTGCTCTATCGCGCGCA
GCGAGTGGAGTGGGAGAAAGAGATTAGGAAGATGCATAAATACACAACTG
CGGCAGCGAAGAAGCAGAAGCGCAAGGTGGGCGTGCAGGTGACGTAA

Synonyms

Publications