jgi.p|Nanoce1779_2|624524, mRNA_1672 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|624524
Unique Name	mRNA_1672
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3300
Alignment location	scaffold_1:1204263..1207696 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	624610
Track	FilteredModels2
ProteinId	624524

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1204263..1207696 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624524	gene_1672	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624524	mRNA_1672-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1672	CDS_1672	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1204263..1207696-
coding sequence from alignment at scaffold_1:1204263..1207696-

mRNA sequence

>mRNA_1672 ID=mRNA_1672|Name=jgi.p|Nanoce1779_2|624524|organism=Nannochloropsis oceanica|type=mRNA|length=3300bp
ACATTGAGCCGGGGAAGTTCCGCCACACACACTTAACAAGCCACCATAGA
TCTGAGCAATACCATCTTTGGGCGTCTCCTCCTGAGCCACATTATTCCAT
GTCACAGGTCCTATCATACGCCGCATGATATGTGTGTAGGAAATCAGCGG
GGCAGAGTCGGCACATAGATTCAACTTCTCATCATCCATCATCATGGTGA
TCATGCCCTCCTTATCACTCGACGCCGCTACGACCATCCATATACATACA
GACAGCACCAGTTTAAGCTCGCCCGCCTTTTCACGACCTCATATCGGTCC
TTAGGCTCATCTCATGGACGCCTCCCCCGACCCCCAAGACACGCTCGCTC
GAGAAATGCAGCGAAAAGGACTTCTTCGCCCACTCGCCTCCTCGTCCTCA
GCCTTACCAGCCATTCCACCAGCCTTGCACGTCGCCTTTTTGCATCTTGA
CCTGGGCATCGGCGGGGCGGAGCAGCTAGTGGTGAACGCTGCCGTGGCCC
TACAGCAGCGCGGGCATCGCGTCACCTTGTGGACGACCCACCACGATCCG
ACCCATTGCTTTGCCGAGACTCGGGGAGACGGTCCCTTGGCACCGCACGT
GCGCGTGGCCGGGGATTGGCTGCCCAGGCAAATCCTCGGTAGGTTTAGAG
CACTATGTGCGGTGGTCCGTATGCTGTACTTGGCCTTTATGGTGGGGCTC
TTGACGAGGATGGGGGAGTTATGCTGGTGGCATCGCCGCGGGAACGAGGA
TAGGAAGCAGCAGCAGCAACAGCTGCGACACGATCATATAGACATAGTAT
TTTGTGACGGCGTCTCAGCGATGGTGCCCTTACTGCGCTTCTTGTGGAGA
TTTCCTGTATTGTTCTACTGCCACTTTCCCGACAAGCTCCTCTGCACAGA
CCGAGCCTCGTTAATAAAGCGTTGCTATCGCGCGCCATTGGATAGGATCG
AGGAAAGTACCACCGGGGCCGCCACTCTCATTGCGGTCAATAGTCATTTT
ACTGCTCAGGTCTTTACCGAGGCTTTTCCAAGTTTGCCGTCTCGACATGG
GACACCGGCGGTGATTTATCCTGCCATCAACTTGAAGTCCTTCGTGCCCC
CCAAAGCAGCAGCAGCAGCAACAACAACAATAACGGAAAATGCAGCCAGT
AGAGGAAATGTGGCAAACATCACAAGGGAGCTCCGTCCTTTCGTTTCTCT
CAATCGTTTTGAAAGAAAGAAGAATATTGGCCTGGCCTTGGAAGCCCTCG
CCCTCGTCCGCACCAGTCTCCAACATCAAGCAGAAGACCAAAAATCAAAT
CAAGAAAATCTGCTGAAGGAACTCCGCCTCATCATCGCTGGCGGATACGA
CGACGCCGTCGTCGAAAACAAGGAGTACATGCGAGAGCTTCAATCCCAAG
CTCAACAACTCGACCTTTCCGACTGCGTCTCCTTTCAACCCTCTATCTCA
GATGCCACCCGGGCCACCCTACTACAAGAGGCGCTGGCAGTGCTGTATAC
CCCTGATCGAGAGCATTTTGGGATCGTGCCATTAGAAGCTATGTATGCAG
GGAGCCCTGTGTTGGCAGTCGCGTCGGGAGGGCCCCTGGAAACAGTACTT
CATGGGAAGACCGGTTTTTTATGTGAGGGGACAGGAAAGGGGTTTGCAGA
GGCGATGCTTCGGTTACTGAGGAAGCCGGAGTCAAGGGATGAGATGGGGA
GGGTGGGACACGAGTATGTGAAAGAAAAATTTGGCTTGGATGCCTTCGCA
ACGACATTGGAGAAGGCAGTATTGGACACGAGGACGAGGGCGAGGGAGGG
CGAGCAGATATGGAGAGGAGGAATAATATGGGTGTTGGTGATGGTGGGGA
TGGTGATGCTGGCGCAAGCATTGTTGTATAAATAGTGCTTTTATGTTTTG
TTTTACAGAAATAAGCTTTGAAATGAAGAATGAGCGGAAGTATTTTATGC
TCCATCGCGCGCATTAGGGCAATCAAGGCTCGGCTTAACAGTCAGAACTC
GCATTGCAAGCTGCATGATGATCCTTGCCCAACGTTTGGGGTCTTGCTTG
GTGTATGCACAAGCGTCCGCCCACTACGTCGGCTGTCTCACTCATCTTGT
TAACATGTGGGTCTGTTGCTCAAGATGGTAGTGGCCGTCAGAGCCGGCGG
CGCACTGCATAGAGGCAAATGAACAAGACTTTCTCTGTCTCTCTATGCTT
GATGATGTTGTCTTGTCCTCAGCCCCGGCTCCCATACAAAACATCCTGCC
GCATACACATAGGCAGCCATGGCATCGACGCTTCTGGCGAAGACGATGCT
CCGCCAGGCCGTGGTAGTGGGAGCCCGCGGGCCAGCAGTTGCAGCGAGAG
CGGCCGGCGTAGGGAGCACCGGGAGCAGCAGAGGTCTTTCTTGGGTCAAG
GACGTGACAGTGAACGTCACCTTTATCAACCATGAAGGTCTGAGGATAAC
AGTGCCGGGCCGAGTGGGACAAAGCTTGCTGGACGTGGCGCAGATGCACG
ACATCGAGTTGGAGTCAGGATGCGGGGGTGGTGGGGCCGAGCAGCAGAAA
AAGCATTCGGAACGGTGGACGGAGGACTTGTTTGGACGAGGTGAGTGAGC
GTGGGAGGAAAGCGAGAGGGGAATGAGGACGGCAATTCTATGGCAACGAC
TGTCGATTTAGTGGAGCAGGAAACAGGTATAAGTAGCGTTACCACCTGAG
TGTGAATGGTTTGGTAGCGTCGCTTTGCGACACCGTTAATGCCAGGGCCC
AAATTCTTCTCTAGAGTAGTTGCTCACTTCCTCTCCCTCCTTCCCCCTCA
TTCATCCTCTACAGGCCCCTGCTGCCACTTCTGCCACGTTAAGATTCCTT
CCCCCTGGATCGACTTTGTGGAGGATAAACAGCCGGCGACGGATAAGGAG
AATGAGCTGCTACAGGAGCATTGGGTGGAGGAAGCCTCGGCAAACTCTCG
ATTGGGGTGTCAAGTGACGTTGACCAAATCCTTGGACGGAATTCAGGTAT
TTATCCCGGATGGACCGCCGGCAGATTGCCCGTAGACTCACTTGACCGAT
TGATATGGATGGATGGACGGATTGAGAGGAGGGAGGGAAGGAGGGAGGTT
TGTCGCGGCGTTCAGGAACGAGGTGTGGGCAGGGGCTTCAGAGCCCTAGG
GTAGTTAGTACAAGCGACAAGCGAGCTAGGAAGTGCAGAGGCCTTTTTTA
TACGAGTAGGGGAAGTGGAGTGGAAACAGTGAGGATGACGAATAGAGGAA
TACGGGGAAAGAACACCGTGCACAAATGATGAAATCAGTTGAGAACAGAG

protein sequence of jgi.p|Nanoce1779_2|624524

>mRNA_1672-protein ID=mRNA_1672-protein|Name=jgi.p|Nanoce1779_2|624524|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MDASPDPQDTLAREMQRKGLLRPLASSSSALPAIPPALHVAFLHLDLGIG
GAEQLVVNAAVALQQRGHRVTLWTTHHDPTHCFAETRGDGPLAPHVRVAG
DWLPRQILGRFRALCAVVRMLYLAFMVGLLTRMGELCWWHRRGNEDRKQQ
QQQLRHDHIDIVFCDGVSAMVPLLRFLWRFPVLFYCHFPDKLLCTDRASL
IKRCYRAPLDRIEESTTGAATLIAVNSHFTAQVFTEAFPSLPSRHGTPAV
IYPAINLKSFVPPKAAAAATTTITENAASRGNVANITRELRPFVSLNRFE
RKKNIGLALEALALVRTSLQHQAEDQKSNQENLLKELRLIIAGGYDDAVV
ENKEYMRELQSQAQQLDLSDCVSFQPSISDATRATLLQEALAVLYTPDRE
HFGIVPLEAMYAGSPVLAVASGGPLETVLHGKTGFLCEGTGKGFAEAMLR
LLRKPESRDEMGRVGHEYVKEKFGLDAFATTLEKAVLDTRTRAREGEQIW
RGGIIWVLVMVGMVMLAQALLYK*

mRNA from alignment at scaffold_1:1204263..1207696-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1672 ID=mRNA_1672|Name=jgi.p|Nanoce1779_2|624524|organism=Nannochloropsis oceanica|type=mRNA|length=3434bp|location=Sequence derived from alignment at scaffold_1:1204263..1207696- (Nannochloropsis oceanica)
ACATTGAGCCGGGGAAGTTCCGCCACACACACTTAACAAGCCACCATAGA
TCTGAGCAATACCATCTTTGGGCGTCTCCTCCTGAGCCACATTATTCCAT
GTCACAGGTCCTATCATACGCCGCATGATATGTGTGTAGGAAATCAGCGG
GGCAGAGTCGGCACATAGATTCAACTTCTCATCATCCATCATCATGGTGA
TCATGCCCTCCTTATCACTCGACGCCGCTACGACCATCCATATACATACA
GACAGCACCAGTTTAAGCTCGCCCGCCTTTTCACGACCTCATATCGGTCC
TTAGGCTCATCTCATGGACGCCTCCCCCGACCCCCAAGACACGCTCGCTC
GAGAAATGCAGCGAAAAGGACTTCTTCGCCCACTCGCCTCCTCGTCCTCA
GCCTTACCAGCCATTCCACCAGCCTTGCACGTCGCCTTTTTGCATCTTGA
CCTGGGCATCGGCGGGGCGGAGCAGCTAGTGGTGAACGCTGCCGTGGCCC
TACAGCAGCGCGGGCATCGCGTCACCTTGTGGACGACCCACCACGATCCG
ACCCATTGCTTTGCCGAGACTCGGGGAGACGGTCCCTTGGCACCGCACGT
GCGCGTGGCCGGGGATTGGCTGCCCAGGCAAATCCTCGGTAGGTTTAGAG
CACTATGTGCGGTGGTCCGTATGCTGTACTTGGCCTTTATGGTGGGGCTC
TTGACGAGGATGGGGGAGTTATGCTGGTGGCATCGCCGCGGGAACGAGGA
TAGGAAGCAGCAGCAGCAACAGCTGCGACACGATCATATAGACATAGTAT
TTTGTGACGGCGTCTCAGCGATGGTGCCCTTACTGCGCTTCTTGTGGAGA
TTTCCTGTATTGTTCTACTGCCACTTTCCCGACAAGCTCCTCTGCACAGA
CCGAGCCTCGTTAATAAAGCGTTGCTATCGCGCGCCATTGGATAGGATCG
AGGAAAGTACCACCGGGGCCGCCACTCTCATTGCGGTCAATAGTCATTTT
ACTGCTCAGGTCTTTACCGAGGCTTTTCCAAGTTTGCCGTCTCGACATGG
GACACCGGCGGTGATTTATCCTGCCATCAACTTGAAGTCCTTCGTGCCCC
CCAAAGCAGCAGCAGCAGCAACAACAACAATAACGGAAAATGCAGCCAGT
AGAGGAAATGTGGCAAACATCACAAGGGAGCTCCGTCCTTTCGTTTCTCT
CAATCGTTTTGAAAGAAAGAAGAATATTGGCCTGGCCTTGGAAGCCCTCG
CCCTCGTCCGCACCAGTCTCCAACATCAAGCAGAAGACCAAAAATCAAAT
CAAGAAAATCTGCTGAAGGAACTCCGCCTCATCATCGCTGGCGGATACGA
CGACGCCGTCGTCGAAAACAAGGAGTACATGCGAGAGCTTCAATCCCAAG
CTCAACAACTCGACCTTTCCGACTGCGTCTCCTTTCAACCCTCTATCTCA
GATGCCACCCGGGCCACCCTACTACAAGAGGCGCTGGCAGTGCTGTATAC
CCCTGATCGAGAGCATTTTGGGATCGTGCCATTAGAAGCTATGTATGCAG
GGAGCCCTGTGTTGGCAGTCGCGTCGGGAGGGCCCCTGGAAACAGTACTT
CATGGGAAGACCGGTTTTTTATGTGAGGGGACAGGAAAGGGGTTTGCAGA
GGCGATGCTTCGGTTACTGAGGAAGCCGGAGTCAAGGGATGAGATGGGGA
GGGTGGGACACGAGTATGTGAAAGAAAAATTTGGCTTGGATGCCTTCGCA
ACGACATTGGAGAAGGCAGTATTGGACACGAGGACGAGGGCGAGGGAGGG
CGAGCAGATATGGAGAGGAGGAATAATATGGGTGTTGGTGATGGTGGGGA
TGGTGATGCTGGCGCAAGCATTGTTGTATAAATAGTGCTTTTATGTTTTG
TTTTACAGAAATAAGCTTTGAAATGAAGAATGAGCGGAAGTATTTTATGC
TCCATCGCGCGCATTAGGGCAATCAAGGCTCGGCTTAACAGTCAGAACTC
GCATTGCAAGCTGCATGATGATCCTTGCCCAACGTTTGGGGTCTTGCTTG
GTGTATGCACAAGCGTCCGCCCACTACGTCGGCTGTCTCACTCATCTTGT
TAACATGTGGGTCTGTTGCTCAAGATGGTAGTGGCCGTCAGAGCCGGCGG
CGCACTGCATAGAGGCAAATGAACAAGACTTTCTCTGTCTCTCTATGCTT
GATGATGTTGTCTTGTCCTCAGCCCCGGCTCCCATACAAAACATCCTGCC
GCATACACATAGGCAGCCATGGCATCGACGCTTCTGGCGAAGACGATGCT
CCGCCAGGCCGTGGTAGTGGGAGCCCGCGGGCCAGCAGTTGCAGCGAGAG
CGGCCGGCGTAGGGAGCACCGGGAGCAGCAGAGGTCTTTCTTGGGTCAAG
GACGTGACAGTGAACGTCACCTTTATCAACCATGAAGTAAGTATAGAGTG
TGTGTATGTGTTGAATGCGACAAAATGTAGGGATAATATGGACCGTTGGC
ATTTAAAAGGCCTCAATCAGCCACTAATGCCTTCCCCTATCCCCTCGCAC
CTCTCGCACACACATATCAGGGTCTGAGGATAACAGTGCCGGGCCGAGTG
GGACAAAGCTTGCTGGACGTGGCGCAGATGCACGACATCGAGTTGGAGTC
AGGATGCGGGGGTGGTGGGGCCGAGCAGCAGAAAAAGCATTCGGAACGGT
GGACGGAGGACTTGTTTGGACGAGGTGAGTGAGCGTGGGAGGAAAGCGAG
AGGGGAATGAGGACGGCAATTCTATGGCAACGACTGTCGATTTAGTGGAG
CAGGAAACAGGTATAAGTAGCGTTACCACCTGAGTGTGAATGGTTTGGTA
GCGTCGCTTTGCGACACCGTTAATGCCAGGGCCCAAATTCTTCTCTAGAG
TAGTTGCTCACTTCCTCTCCCTCCTTCCCCCTCATTCATCCTCTACAGGC
CCCTGCTGCCACTTCTGCCACGTTAAGATTCCTTCCCCCTGGATCGACTT
TGTGGAGGATAAACAGCCGGCGACGGATAAGGAGAATGAGCTGCTACAGG
AGCATTGGGTGGAGGAAGCCTCGGCAAACTCTCGATTGGGGTGTCAAGTG
ACGTTGACCAAATCCTTGGACGGAATTCAGGTATTTATCCCGGATGGACC
GCCGGCAGATTGCCCGTAGACTCACTTGACCGATTGATATGGATGGATGG
ACGGATTGAGAGGAGGGAGGGAAGGAGGGAGGTTTGTCGCGGCGTTCAGG
AACGAGGTGTGGGCAGGGGCTTCAGAGCCCTAGGGTAGTTAGTACAAGCG
ACAAGCGAGCTAGGAAGTGCAGAGGCCTTTTTTATACGAGTAGGGGAAGT
GGAGTGGAAACAGTGAGGATGACGAATAGAGGAATACGGGGAAAGAACAC
CGTGCACAAATGATGAAATCAGTTGAGAACAGAG

Coding sequence (CDS) from alignment at scaffold_1:1204263..1207696-

>mRNA_1672 ID=mRNA_1672|Name=jgi.p|Nanoce1779_2|624524|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_1:1204263..1207696- (Nannochloropsis oceanica)
ATGGACGCCTCCCCCGACCCCCAAGACACGCTCGCTCGAGAAATGCAGCG
AAAAGGACTTCTTCGCCCACTCGCCTCCTCGTCCTCAGCCTTACCAGCCA
TTCCACCAGCCTTGCACGTCGCCTTTTTGCATCTTGACCTGGGCATCGGC
GGGGCGGAGCAGCTAGTGGTGAACGCTGCCGTGGCCCTACAGCAGCGCGG
GCATCGCGTCACCTTGTGGACGACCCACCACGATCCGACCCATTGCTTTG
CCGAGACTCGGGGAGACGGTCCCTTGGCACCGCACGTGCGCGTGGCCGGG
GATTGGCTGCCCAGGCAAATCCTCGGTAGGTTTAGAGCACTATGTGCGGT
GGTCCGTATGCTGTACTTGGCCTTTATGGTGGGGCTCTTGACGAGGATGG
GGGAGTTATGCTGGTGGCATCGCCGCGGGAACGAGGATAGGAAGCAGCAG
CAGCAACAGCTGCGACACGATCATATAGACATAGTATTTTGTGACGGCGT
CTCAGCGATGGTGCCCTTACTGCGCTTCTTGTGGAGATTTCCTGTATTGT
TCTACTGCCACTTTCCCGACAAGCTCCTCTGCACAGACCGAGCCTCGTTA
ATAAAGCGTTGCTATCGCGCGCCATTGGATAGGATCGAGGAAAGTACCAC
CGGGGCCGCCACTCTCATTGCGGTCAATAGTCATTTTACTGCTCAGGTCT
TTACCGAGGCTTTTCCAAGTTTGCCGTCTCGACATGGGACACCGGCGGTG
ATTTATCCTGCCATCAACTTGAAGTCCTTCGTGCCCCCCAAAGCAGCAGC
AGCAGCAACAACAACAATAACGGAAAATGCAGCCAGTAGAGGAAATGTGG
CAAACATCACAAGGGAGCTCCGTCCTTTCGTTTCTCTCAATCGTTTTGAA
AGAAAGAAGAATATTGGCCTGGCCTTGGAAGCCCTCGCCCTCGTCCGCAC
CAGTCTCCAACATCAAGCAGAAGACCAAAAATCAAATCAAGAAAATCTGC
TGAAGGAACTCCGCCTCATCATCGCTGGCGGATACGACGACGCCGTCGTC
GAAAACAAGGAGTACATGCGAGAGCTTCAATCCCAAGCTCAACAACTCGA
CCTTTCCGACTGCGTCTCCTTTCAACCCTCTATCTCAGATGCCACCCGGG
CCACCCTACTACAAGAGGCGCTGGCAGTGCTGTATACCCCTGATCGAGAG
CATTTTGGGATCGTGCCATTAGAAGCTATGTATGCAGGGAGCCCTGTGTT
GGCAGTCGCGTCGGGAGGGCCCCTGGAAACAGTACTTCATGGGAAGACCG
GTTTTTTATGTGAGGGGACAGGAAAGGGGTTTGCAGAGGCGATGCTTCGG
TTACTGAGGAAGCCGGAGTCAAGGGATGAGATGGGGAGGGTGGGACACGA
GTATGTGAAAGAAAAATTTGGCTTGGATGCCTTCGCAACGACATTGGAGA
AGGCAGTATTGGACACGAGGACGAGGGCGAGGGAGGGCGAGCAGATATGG
AGAGGAGGAATAATATGGGTGTTGGTGATGGTGGGGATGGTGATGCTGGC
GCAAGCATTGTTGTATAAATAG

Synonyms

Publications