jgi.p|Nanoce1779_2|13552, mRNA_1662 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|13552
Unique NamemRNA_1662
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1943
Alignment locationscaffold_1:1187036..1188978 -

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Properties
Property NameValue
TranscriptId13638
TrackFilteredModels2
ProteinId13552
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1187036..1188978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|13552gene_1662Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|13552mRNA_1662-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1662CDS_1662Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1662 ID=mRNA_1662|Name=jgi.p|Nanoce1779_2|13552|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp
AGGCGATCTCGCAAGGCTACAACCAGGCAGTATCAGCACCAGAATCATCG
CTGGGCTGGGCTTCGACAGCGTCGTCGTGTAATATATGCCACAGCAGCAT
CACTTGCACATGCAGCATAGGCGCAAGCCACCGCCATGGCCACGGCGGCT
TGCTCTACTTATTATCCTCCTCGTTGTCTATCTGCCCACGCTGCTATCTG
CTTTCTTGTTCCATGCACCACGGAGAAGACGAGGGGTACTGCTCCTTTCC
GCACGTGGCAAGAGGCCGTCTTCTTCCCCTTCACCACCAACAACGCAAGC
ACCATTACAGGCGAGCAGGAGAAGCAGTAGTAGTGGCAACACCACCACCA
CCTCCACCAGCAGCCGCAGCAACAGCAGCAGTTACAGGAATAACAACAAC
ACGGGGTTCAAGCGGCAATCTTCCACATCCTCCAAAGTACCATGGCCACT
CCCACGTCTCCCCTCATCAATCGCGACAACCTCAACCAGAAGTGTCAGTA
CGGCCAAATCTCGCTGGCGCCCCTTCTCCTCCTCCATCTCCCCCTCCTCT
TCGTGCATCGGCACCCGCAACTCGCGGCAACTCAGCCGCTCCCTCCTAGC
ATGTTCCCCTGGGGATGTAGATGCAATACTCACACTGGTCGACGCCAATC
ACAACAAGCTGAATCCTGCAGACTGTGCCTTGGCCCTTAAGATTATGGTG
AATCGACCACAGCTTTCCTCCACCTCCTCTTCCACCTCGGTACCCTACCG
CCAGTCTTCTGTCAAGGCCGGCAACGTATCCTTATTTCCGTGGCTTTGCT
TGGCAGAGGACATACGCTTTGAACGTTTCTTACTGCGTGTTCAGTATCTG
GCCCCGTCCCTCGAGTCTGGAGACTTGACGAGAATCATAAGAACGCTGCC
TCGCCTAGCCTTTATGGGAGGCGGAGGAGGAGGGGGAGGAGGGGAAAGAG
GCTCGGTTGAGGGAAGCAATGGTGCTAGCAGCGACACCGGTAGTGGGCAG
TCAGCTCCCCAAAAGATGTCGCTGTTGCTGGGTGCGTTGGTGGGAGGACT
GCGAAGGCGGATGACGGAGGTGCTTCCCTCGTATTCTGCACAAGAGCTGG
CACTCACGGTTAATGCCTTGACGAAGCTCCCTCTAGCACAACCACGACGG
TCCCAGCAGCAACCGCAGCAAAAGGGCAGCCATAATGACAAGCTTGAGAT
GCTGTTCCTGAAGACAGTTAGCGAGCGGCTGGATGACTGCACTCCTCAAG
GTCTTGCACTTCTCCTCACCGGCCTGCCCAAGCTGTTTGAGCAAGCCCGC
ATCATCGACGACAGCAGCAGCAGCCGCAGCAACAGCGGCATCAGTGCACA
CCTTGATGGCCCCTTCCTTCTTCGCTTCCGGGACGCCGTCGCGACCCAGC
TACTCGCCACGCCCTTCCTCCCCCAAGACCTCGCCCTCCTCCTGAATGGA
TTCACCAACCTCGGATTCAACCCTGGTATTGAGTTTCTCCACCTTTTTTC
GAGACAAGTTCAAGAGGTCCTCCCCAGCTGCAAGCCTCAAGGTAGGTCGG
TGCATCTCTCCCTTCCTTTCTTCTTGCCTTTCTTCCTTCCTTCCTTCTCC
TTTCTTCCTTCCGCCTCCTTTCTTCCTTCCTTTCTTCCTTCCTTTCTTTC
TCTCTTCCTTCCTTCCACCCTCTTCGAGAACGCGAGACTTAATCCTCCTT
CCTTCCCTACCTTTTTCCTTTCTGGTGCATGTCTCGAATGTCAACGAGAG
AGTCTTAGAGCTACGACACTGAAAACAGACCCCAAGGCTAACCCTCTCAC
CTTTCCTTCCTCCTTCCCTCCCCCTCCCTAGACATAGCTCTCCTTTTCCT
CTGCTACGCCAAGCTGCAATGGCGACCCTCTCCGGCCTGCCTGTCTCAAA
TGACGGACAGAGCACTGGCCACAATGCCCACCTACCGCCCTCA
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protein sequence of jgi.p|Nanoce1779_2|13552

>mRNA_1662-protein ID=mRNA_1662-protein|Name=jgi.p|Nanoce1779_2|13552|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MPQQHHLHMQHRRKPPPWPRRLALLIILLVVYLPTLLSAFLFHAPRRRRG
VLLLSARGKRPSSSPSPPTTQAPLQASRRSSSSGNTTTTSTSSRSNSSSY
RNNNNTGFKRQSSTSSKVPWPLPRLPSSIATTSTRSVSTAKSRWRPFSSS
ISPSSSCIGTRNSRQLSRSLLACSPGDVDAILTLVDANHNKLNPADCALA
LKIMVNRPQLSSTSSSTSVPYRQSSVKAGNVSLFPWLCLAEDIRFERFLL
RVQYLAPSLESGDLTRIIRTLPRLAFMGGGGGGGGGERGSVEGSNGASSD
TGSGQSAPQKMSLLLGALVGGLRRRMTEVLPSYSAQELALTVNALTKLPL
AQPRRSQQQPQQKGSHNDKLEMLFLKTVSERLDDCTPQGLALLLTGLPKL
FEQARIIDDSSSSRSNSGISAHLDGPFLLRFRDAVATQLLATPFLPQDLA
LLLNGFTNLGFNPGIEFLHLFSRQVQEVLPSCKPQGRSVHLSLPFFLPFF
LPSFSFLPSASFLPSFLPSFLSLFLPSTLFENARLNPPSFPTFFLSGACL
ECQRESLRATTLKTDPKANPLTFPSSFPPPP*
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mRNA from alignment at scaffold_1:1187036..1188978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1662 ID=mRNA_1662|Name=jgi.p|Nanoce1779_2|13552|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp|location=Sequence derived from alignment at scaffold_1:1187036..1188978- (Nannochloropsis oceanica)
AGGCGATCTCGCAAGGCTACAACCAGGCAGTATCAGCACCAGAATCATCG
CTGGGCTGGGCTTCGACAGCGTCGTCGTGTAATATATGCCACAGCAGCAT
CACTTGCACATGCAGCATAGGCGCAAGCCACCGCCATGGCCACGGCGGCT
TGCTCTACTTATTATCCTCCTCGTTGTCTATCTGCCCACGCTGCTATCTG
CTTTCTTGTTCCATGCACCACGGAGAAGACGAGGGGTACTGCTCCTTTCC
GCACGTGGCAAGAGGCCGTCTTCTTCCCCTTCACCACCAACAACGCAAGC
ACCATTACAGGCGAGCAGGAGAAGCAGTAGTAGTGGCAACACCACCACCA
CCTCCACCAGCAGCCGCAGCAACAGCAGCAGTTACAGGAATAACAACAAC
ACGGGGTTCAAGCGGCAATCTTCCACATCCTCCAAAGTACCATGGCCACT
CCCACGTCTCCCCTCATCAATCGCGACAACCTCAACCAGAAGTGTCAGTA
CGGCCAAATCTCGCTGGCGCCCCTTCTCCTCCTCCATCTCCCCCTCCTCT
TCGTGCATCGGCACCCGCAACTCGCGGCAACTCAGCCGCTCCCTCCTAGC
ATGTTCCCCTGGGGATGTAGATGCAATACTCACACTGGTCGACGCCAATC
ACAACAAGCTGAATCCTGCAGACTGTGCCTTGGCCCTTAAGATTATGGTG
AATCGACCACAGCTTTCCTCCACCTCCTCTTCCACCTCGGTACCCTACCG
CCAGTCTTCTGTCAAGGCCGGCAACGTATCCTTATTTCCGTGGCTTTGCT
TGGCAGAGGACATACGCTTTGAACGTTTCTTACTGCGTGTTCAGTATCTG
GCCCCGTCCCTCGAGTCTGGAGACTTGACGAGAATCATAAGAACGCTGCC
TCGCCTAGCCTTTATGGGAGGCGGAGGAGGAGGGGGAGGAGGGGAAAGAG
GCTCGGTTGAGGGAAGCAATGGTGCTAGCAGCGACACCGGTAGTGGGCAG
TCAGCTCCCCAAAAGATGTCGCTGTTGCTGGGTGCGTTGGTGGGAGGACT
GCGAAGGCGGATGACGGAGGTGCTTCCCTCGTATTCTGCACAAGAGCTGG
CACTCACGGTTAATGCCTTGACGAAGCTCCCTCTAGCACAACCACGACGG
TCCCAGCAGCAACCGCAGCAAAAGGGCAGCCATAATGACAAGCTTGAGAT
GCTGTTCCTGAAGACAGTTAGCGAGCGGCTGGATGACTGCACTCCTCAAG
GTCTTGCACTTCTCCTCACCGGCCTGCCCAAGCTGTTTGAGCAAGCCCGC
ATCATCGACGACAGCAGCAGCAGCCGCAGCAACAGCGGCATCAGTGCACA
CCTTGATGGCCCCTTCCTTCTTCGCTTCCGGGACGCCGTCGCGACCCAGC
TACTCGCCACGCCCTTCCTCCCCCAAGACCTCGCCCTCCTCCTGAATGGA
TTCACCAACCTCGGATTCAACCCTGGTATTGAGTTTCTCCACCTTTTTTC
GAGACAAGTTCAAGAGGTCCTCCCCAGCTGCAAGCCTCAAGGTAGGTCGG
TGCATCTCTCCCTTCCTTTCTTCTTGCCTTTCTTCCTTCCTTCCTTCTCC
TTTCTTCCTTCCGCCTCCTTTCTTCCTTCCTTTCTTCCTTCCTTTCTTTC
TCTCTTCCTTCCTTCCACCCTCTTCGAGAACGCGAGACTTAATCCTCCTT
CCTTCCCTACCTTTTTCCTTTCTGGTGCATGTCTCGAATGTCAACGAGAG
AGTCTTAGAGCTACGACACTGAAAACAGACCCCAAGGCTAACCCTCTCAC
CTTTCCTTCCTCCTTCCCTCCCCCTCCCTAGACATAGCTCTCCTTTTCCT
CTGCTACGCCAAGCTGCAATGGCGACCCTCTCCGGCCTGCCTGTCTCAAA
TGACGGACAGAGCACTGGCCACAATGCCCACCTACCGCCCTCA
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Coding sequence (CDS) from alignment at scaffold_1:1187036..1188978-

>mRNA_1662 ID=mRNA_1662|Name=jgi.p|Nanoce1779_2|13552|organism=Nannochloropsis oceanica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_1:1187036..1188978- (Nannochloropsis oceanica)
ATGCCACAGCAGCATCACTTGCACATGCAGCATAGGCGCAAGCCACCGCC
ATGGCCACGGCGGCTTGCTCTACTTATTATCCTCCTCGTTGTCTATCTGC
CCACGCTGCTATCTGCTTTCTTGTTCCATGCACCACGGAGAAGACGAGGG
GTACTGCTCCTTTCCGCACGTGGCAAGAGGCCGTCTTCTTCCCCTTCACC
ACCAACAACGCAAGCACCATTACAGGCGAGCAGGAGAAGCAGTAGTAGTG
GCAACACCACCACCACCTCCACCAGCAGCCGCAGCAACAGCAGCAGTTAC
AGGAATAACAACAACACGGGGTTCAAGCGGCAATCTTCCACATCCTCCAA
AGTACCATGGCCACTCCCACGTCTCCCCTCATCAATCGCGACAACCTCAA
CCAGAAGTGTCAGTACGGCCAAATCTCGCTGGCGCCCCTTCTCCTCCTCC
ATCTCCCCCTCCTCTTCGTGCATCGGCACCCGCAACTCGCGGCAACTCAG
CCGCTCCCTCCTAGCATGTTCCCCTGGGGATGTAGATGCAATACTCACAC
TGGTCGACGCCAATCACAACAAGCTGAATCCTGCAGACTGTGCCTTGGCC
CTTAAGATTATGGTGAATCGACCACAGCTTTCCTCCACCTCCTCTTCCAC
CTCGGTACCCTACCGCCAGTCTTCTGTCAAGGCCGGCAACGTATCCTTAT
TTCCGTGGCTTTGCTTGGCAGAGGACATACGCTTTGAACGTTTCTTACTG
CGTGTTCAGTATCTGGCCCCGTCCCTCGAGTCTGGAGACTTGACGAGAAT
CATAAGAACGCTGCCTCGCCTAGCCTTTATGGGAGGCGGAGGAGGAGGGG
GAGGAGGGGAAAGAGGCTCGGTTGAGGGAAGCAATGGTGCTAGCAGCGAC
ACCGGTAGTGGGCAGTCAGCTCCCCAAAAGATGTCGCTGTTGCTGGGTGC
GTTGGTGGGAGGACTGCGAAGGCGGATGACGGAGGTGCTTCCCTCGTATT
CTGCACAAGAGCTGGCACTCACGGTTAATGCCTTGACGAAGCTCCCTCTA
GCACAACCACGACGGTCCCAGCAGCAACCGCAGCAAAAGGGCAGCCATAA
TGACAAGCTTGAGATGCTGTTCCTGAAGACAGTTAGCGAGCGGCTGGATG
ACTGCACTCCTCAAGGTCTTGCACTTCTCCTCACCGGCCTGCCCAAGCTG
TTTGAGCAAGCCCGCATCATCGACGACAGCAGCAGCAGCCGCAGCAACAG
CGGCATCAGTGCACACCTTGATGGCCCCTTCCTTCTTCGCTTCCGGGACG
CCGTCGCGACCCAGCTACTCGCCACGCCCTTCCTCCCCCAAGACCTCGCC
CTCCTCCTGAATGGATTCACCAACCTCGGATTCAACCCTGGTATTGAGTT
TCTCCACCTTTTTTCGAGACAAGTTCAAGAGGTCCTCCCCAGCTGCAAGC
CTCAAGGTAGGTCGGTGCATCTCTCCCTTCCTTTCTTCTTGCCTTTCTTC
CTTCCTTCCTTCTCCTTTCTTCCTTCCGCCTCCTTTCTTCCTTCCTTTCT
TCCTTCCTTTCTTTCTCTCTTCCTTCCTTCCACCCTCTTCGAGAACGCGA
GACTTAATCCTCCTTCCTTCCCTACCTTTTTCCTTTCTGGTGCATGTCTC
GAATGTCAACGAGAGAGTCTTAGAGCTACGACACTGAAAACAGACCCCAA
GGCTAACCCTCTCACCTTTCCTTCCTCCTTCCCTCCCCCTCCCTAG
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Synonyms
Publications