jgi.p|Nanoce1779_2|572720, mRNA_1568 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572720
Unique Name	mRNA_1568
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1803
Alignment location	scaffold_1:970236..972038 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572806
Track	FilteredModels2
ProteinId	572720

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:970236..972038 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572720	gene_1568	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572720	mRNA_1568-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1568	CDS_1568	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:970236..972038+
coding sequence from alignment at scaffold_1:970236..972038+

mRNA sequence

>mRNA_1568 ID=mRNA_1568|Name=jgi.p|Nanoce1779_2|572720|organism=Nannochloropsis oceanica|type=mRNA|length=1803bp
ACGCGACTATAGGGATGGGAAGTAGGAGGTTGCGCGACCACACAACACAT
TCTATAATAATGATCATCACTATCCATAATTACCGCCATGAGCAAAACAA
CGCATACCGAAATATAGGTGCCGAAAAGTGGTTGCTCGGTCGGGCTTGGT
CAGGAAAACATCAGCTAATACGACAAGGCAAAGCATCGAGGCCATGCCCT
CCTCCACCGCAAACTCACACGAAGGCGAGACCCCAGCACCTTACCCTCGA
AATACACATGCAGGCAGCGGGCGAGCCTTCAAGTCGTATGAAAAAAACTT
GGCCACGTTGCAGGCAGAATTAGGCAACATCGACCTAGCAGACGAGAAGC
TGGCCAAGGCACTGGACGAACGGGACCTACTAGCTTCTTACAGAGACCAC
TTCATAATTCCTACCGACGGGAAATGCATCTACCTCTGCACTAACTCCCT
TGGGCTCCAACCCAAGCGACTCAGTGAGAACATGCGTGAGGTGCTCGCAA
AGTGGGGCCAAGAAGGGGTTACCTCGTGGTTTCGCGGAGACGCCCCCTTT
GCCACGGCCGATGACAGAGTGCTCGATGGGCTTGCGGCATTGGTGGGAGC
AAAGAGATATGAAGTTGTGGCAATGAACACCCTTAGTGTAAATATTCACC
TTATGTTGGCCGCCTTCTACCATCCAAGTGGACAACGACGTAAAATCATC
GTGGAAGAAGGTGCTTTCCCCTCTGACATGCATGTCTTGCGCTCTCACTT
GGCGCTGGGCCGTCAGACCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAAG
AGCAGGATGAAGAAGACCTGATTCTCATAATTCCTCGTCGGCCAGGAGAA
GCGACTTGGCACCTCTCCGATATCGTCGCCTTCCTACACGAGAACGGACA
AGACGCCTCCCTCCTTTTCTTGAGCGGCCTGCACTTCGCGTCGGGTCAAT
GCTTTGACATGGCAACCATAACACAAGCCGCGCATGCGCAAGGAATGCTT
GTAGGATATGATCTCGCTCACGCAATCGGCAATGTCAAGCTGCAGTTGCA
CGAATGGGGGGTGGATTTTGCTTGCTGGTGCCATTACAAATATGTGTGTG
CGGGCCCTGGGGCGGTGGGCGGGGTGTATGTGCACGAGAAACACACGATG
GCTCAAGACTCTTTGCCTCGTCTAGCTGGATGGTGGGGACAAGTGAAACA
CAATCGCTTTACGTTCAATGAGCCTTCGTTTAAACCATCCCCGGGCGCGA
TGGGTTTCCAGCTCTCTACCCCATCCCCCCTTCTCCTCAGCTGCTTGTCG
AGCTCCCTGAGTGTGTTTGTCGCTGCCGGTGGTATTGAACCACTGAGGCA
AAAATCGATTTTACTCACAGGGTACCTCCACCTCCTTCTTGAGCACGATT
TGGCGTCTCAAGTCCAAGTAGTCACTCCAAAGGCAGTTGAAGAGAGAGGG
TGTCAATTATCGTTTACATTCCGGACAGAGGGAGTCTTAGCGGCTGATGT
TTTGAAAGCCTTGGAGGACCAGAACGTAATGGCAGACGTAAGGATGCCAA
ATTTTATAAGGGTGGCGCCTTTTCCGCTCTATACGAGATTTGTCGATGTG
TGGAGATTTGTGGGGATATTGAAGGAGGTGCTGCGAAGGCCGCATGTGGG
GGGCCAGGAGGAGGAGCAGTTACAGCAGGAGAATAATAATGAGGAGGGTT
GATGGATAATGAATCACTTTTAATATATATATACCTGTAAATATATATCT
ATACCTAATTGTTAATAGGCAATGTACACAAACAAACAACAAAAGGAAGA
GAC

protein sequence of jgi.p|Nanoce1779_2|572720

>mRNA_1568-protein ID=mRNA_1568-protein|Name=jgi.p|Nanoce1779_2|572720|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MPSSTANSHEGETPAPYPRNTHAGSGRAFKSYEKNLATLQAELGNIDLAD
EKLAKALDERDLLASYRDHFIIPTDGKCIYLCTNSLGLQPKRLSENMREV
LAKWGQEGVTSWFRGDAPFATADDRVLDGLAALVGAKRYEVVAMNTLSVN
IHLMLAAFYHPSGQRRKIIVEEGAFPSDMHVLRSHLALGRQTKQQQQQQQ
QQEQDEEDLILIIPRRPGEATWHLSDIVAFLHENGQDASLLFLSGLHFAS
GQCFDMATITQAAHAQGMLVGYDLAHAIGNVKLQLHEWGVDFACWCHYKY
VCAGPGAVGGVYVHEKHTMAQDSLPRLAGWWGQVKHNRFTFNEPSFKPSP
GAMGFQLSTPSPLLLSCLSSSLSVFVAAGGIEPLRQKSILLTGYLHLLLE
HDLASQVQVVTPKAVEERGCQLSFTFRTEGVLAADVLKALEDQNVMADVR
MPNFIRVAPFPLYTRFVDVWRFVGILKEVLRRPHVGGQEEEQLQQENNNE
EG*

mRNA from alignment at scaffold_1:970236..972038+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1568 ID=mRNA_1568|Name=jgi.p|Nanoce1779_2|572720|organism=Nannochloropsis oceanica|type=mRNA|length=1803bp|location=Sequence derived from alignment at scaffold_1:970236..972038+ (Nannochloropsis oceanica)
ACGCGACTATAGGGATGGGAAGTAGGAGGTTGCGCGACCACACAACACAT
TCTATAATAATGATCATCACTATCCATAATTACCGCCATGAGCAAAACAA
CGCATACCGAAATATAGGTGCCGAAAAGTGGTTGCTCGGTCGGGCTTGGT
CAGGAAAACATCAGCTAATACGACAAGGCAAAGCATCGAGGCCATGCCCT
CCTCCACCGCAAACTCACACGAAGGCGAGACCCCAGCACCTTACCCTCGA
AATACACATGCAGGCAGCGGGCGAGCCTTCAAGTCGTATGAAAAAAACTT
GGCCACGTTGCAGGCAGAATTAGGCAACATCGACCTAGCAGACGAGAAGC
TGGCCAAGGCACTGGACGAACGGGACCTACTAGCTTCTTACAGAGACCAC
TTCATAATTCCTACCGACGGGAAATGCATCTACCTCTGCACTAACTCCCT
TGGGCTCCAACCCAAGCGACTCAGTGAGAACATGCGTGAGGTGCTCGCAA
AGTGGGGCCAAGAAGGGGTTACCTCGTGGTTTCGCGGAGACGCCCCCTTT
GCCACGGCCGATGACAGAGTGCTCGATGGGCTTGCGGCATTGGTGGGAGC
AAAGAGATATGAAGTTGTGGCAATGAACACCCTTAGTGTAAATATTCACC
TTATGTTGGCCGCCTTCTACCATCCAAGTGGACAACGACGTAAAATCATC
GTGGAAGAAGGTGCTTTCCCCTCTGACATGCATGTCTTGCGCTCTCACTT
GGCGCTGGGCCGTCAGACCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAAG
AGCAGGATGAAGAAGACCTGATTCTCATAATTCCTCGTCGGCCAGGAGAA
GCGACTTGGCACCTCTCCGATATCGTCGCCTTCCTACACGAGAACGGACA
AGACGCCTCCCTCCTTTTCTTGAGCGGCCTGCACTTCGCGTCGGGTCAAT
GCTTTGACATGGCAACCATAACACAAGCCGCGCATGCGCAAGGAATGCTT
GTAGGATATGATCTCGCTCACGCAATCGGCAATGTCAAGCTGCAGTTGCA
CGAATGGGGGGTGGATTTTGCTTGCTGGTGCCATTACAAATATGTGTGTG
CGGGCCCTGGGGCGGTGGGCGGGGTGTATGTGCACGAGAAACACACGATG
GCTCAAGACTCTTTGCCTCGTCTAGCTGGATGGTGGGGACAAGTGAAACA
CAATCGCTTTACGTTCAATGAGCCTTCGTTTAAACCATCCCCGGGCGCGA
TGGGTTTCCAGCTCTCTACCCCATCCCCCCTTCTCCTCAGCTGCTTGTCG
AGCTCCCTGAGTGTGTTTGTCGCTGCCGGTGGTATTGAACCACTGAGGCA
AAAATCGATTTTACTCACAGGGTACCTCCACCTCCTTCTTGAGCACGATT
TGGCGTCTCAAGTCCAAGTAGTCACTCCAAAGGCAGTTGAAGAGAGAGGG
TGTCAATTATCGTTTACATTCCGGACAGAGGGAGTCTTAGCGGCTGATGT
TTTGAAAGCCTTGGAGGACCAGAACGTAATGGCAGACGTAAGGATGCCAA
ATTTTATAAGGGTGGCGCCTTTTCCGCTCTATACGAGATTTGTCGATGTG
TGGAGATTTGTGGGGATATTGAAGGAGGTGCTGCGAAGGCCGCATGTGGG
GGGCCAGGAGGAGGAGCAGTTACAGCAGGAGAATAATAATGAGGAGGGTT
GATGGATAATGAATCACTTTTAATATATATATACCTGTAAATATATATCT
ATACCTAATTGTTAATAGGCAATGTACACAAACAAACAACAAAAGGAAGA
GAC

Coding sequence (CDS) from alignment at scaffold_1:970236..972038+

>mRNA_1568 ID=mRNA_1568|Name=jgi.p|Nanoce1779_2|572720|organism=Nannochloropsis oceanica|type=CDS|length=1509bp|location=Sequence derived from alignment at scaffold_1:970236..972038+ (Nannochloropsis oceanica)
ATGCCCTCCTCCACCGCAAACTCACACGAAGGCGAGACCCCAGCACCTTA
CCCTCGAAATACACATGCAGGCAGCGGGCGAGCCTTCAAGTCGTATGAAA
AAAACTTGGCCACGTTGCAGGCAGAATTAGGCAACATCGACCTAGCAGAC
GAGAAGCTGGCCAAGGCACTGGACGAACGGGACCTACTAGCTTCTTACAG
AGACCACTTCATAATTCCTACCGACGGGAAATGCATCTACCTCTGCACTA
ACTCCCTTGGGCTCCAACCCAAGCGACTCAGTGAGAACATGCGTGAGGTG
CTCGCAAAGTGGGGCCAAGAAGGGGTTACCTCGTGGTTTCGCGGAGACGC
CCCCTTTGCCACGGCCGATGACAGAGTGCTCGATGGGCTTGCGGCATTGG
TGGGAGCAAAGAGATATGAAGTTGTGGCAATGAACACCCTTAGTGTAAAT
ATTCACCTTATGTTGGCCGCCTTCTACCATCCAAGTGGACAACGACGTAA
AATCATCGTGGAAGAAGGTGCTTTCCCCTCTGACATGCATGTCTTGCGCT
CTCACTTGGCGCTGGGCCGTCAGACCAAGCAGCAGCAGCAGCAGCAGCAG
CAGCAAGAGCAGGATGAAGAAGACCTGATTCTCATAATTCCTCGTCGGCC
AGGAGAAGCGACTTGGCACCTCTCCGATATCGTCGCCTTCCTACACGAGA
ACGGACAAGACGCCTCCCTCCTTTTCTTGAGCGGCCTGCACTTCGCGTCG
GGTCAATGCTTTGACATGGCAACCATAACACAAGCCGCGCATGCGCAAGG
AATGCTTGTAGGATATGATCTCGCTCACGCAATCGGCAATGTCAAGCTGC
AGTTGCACGAATGGGGGGTGGATTTTGCTTGCTGGTGCCATTACAAATAT
GTGTGTGCGGGCCCTGGGGCGGTGGGCGGGGTGTATGTGCACGAGAAACA
CACGATGGCTCAAGACTCTTTGCCTCGTCTAGCTGGATGGTGGGGACAAG
TGAAACACAATCGCTTTACGTTCAATGAGCCTTCGTTTAAACCATCCCCG
GGCGCGATGGGTTTCCAGCTCTCTACCCCATCCCCCCTTCTCCTCAGCTG
CTTGTCGAGCTCCCTGAGTGTGTTTGTCGCTGCCGGTGGTATTGAACCAC
TGAGGCAAAAATCGATTTTACTCACAGGGTACCTCCACCTCCTTCTTGAG
CACGATTTGGCGTCTCAAGTCCAAGTAGTCACTCCAAAGGCAGTTGAAGA
GAGAGGGTGTCAATTATCGTTTACATTCCGGACAGAGGGAGTCTTAGCGG
CTGATGTTTTGAAAGCCTTGGAGGACCAGAACGTAATGGCAGACGTAAGG
ATGCCAAATTTTATAAGGGTGGCGCCTTTTCCGCTCTATACGAGATTTGT
CGATGTGTGGAGATTTGTGGGGATATTGAAGGAGGTGCTGCGAAGGCCGC
ATGTGGGGGGCCAGGAGGAGGAGCAGTTACAGCAGGAGAATAATAATGAG
GAGGGTTGA

Synonyms

Publications