jgi.p|Nanoce1779_2|572477, mRNA_1511 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572477
Unique Name	mRNA_1511
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1299
Alignment location	scaffold_1:816619..817917 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572563
Track	FilteredModels2
ProteinId	572477

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:816619..817917 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572477	gene_1511	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572477	mRNA_1511-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1511	CDS_1511	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:816619..817917-
coding sequence from alignment at scaffold_1:816619..817917-

mRNA sequence

>mRNA_1511 ID=mRNA_1511|Name=jgi.p|Nanoce1779_2|572477|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
CAGACCATCAGAGAGACATGACGCGACAGCGGGACTCGCCCAGGCCTTCG
AAAGACTTAATAACGTCCTATCTCGTTTGTCCGCCGAGTCTGCCGTGTAA
CTTTTTACTGAATGATGATTGAGATCATCGCTCCCGTGATGCGGGTGCTT
CCTCGTTATTGCTTGACAAGTCACGCACCACATTCCCGCACTCATGACAC
AACACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCATGGCCCGG
CGTGCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGTGCCGTGC
CGCCAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCTTTAACGT
GCTCCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATCCTCGTCC
TCATCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCCCGTCGTC
GTCGTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGCGATGAAG
CCAGTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGGGCCCTTC
TTCGACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGCTTCACAT
CCAGCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAAGAGAAAC
CGGACCCTATGATCGATGGTGCACGTATTGGTAAGTGAAAAGGCTTGGAG
GGGTGGCACTGAGGAGATGGGAGAAGGCAGGGCTAAATTATGCCCAGAGC
TGTGACGGACTCATTTGCTTGTTGTTACCTATACGTTGCCCAGATTTAAA
CTGCGACGTAATAAATCTGAGAGTTCACAAGCTCACCATATCCGCCTCCC
CCCAAAACAAAAATAGCACCCGCCTCATCCCCCCCCACCATGGTGCTGGA
AGAGGAGATTACAACGGACAGCACGGGTGGAGAGGCCATGCAGCTCATTA
AACGGACATATCAACCTAGTTTGCTCAGGCGTAAGCGAGCCCATGGCTTT
TTGAGTCGTCTTAAAAACAGGGACGGACGGAAAATTCTTGCGCGACGACG
AGCGAAGAATCGTACGCGAATGGCAGTTTAATGGAGATTGCGAGGGAGGA
TATGTGTATATAGGTTTAGAGTAGACGTTGGGGAGAAAGAGGGAGAGGTG
GTGGGATGGATAGTAAAGGAGGCGAAACACATGCCGAGACATTGAAGGAT
CAAAAATAAAGTCATCTAGACGGATTGCAGAGGTAGAAGAGTAAAGCAAG
GGAAGAGGAAGAATATAACAAAAAGAACAAATTCTTTTTCACACATTCA

protein sequence of jgi.p|Nanoce1779_2|572477

>mRNA_1511-protein ID=mRNA_1511-protein|Name=jgi.p|Nanoce1779_2|572477|organism=Nannochloropsis oceanica|type=polypeptide|length=64bp
MVLEEEITTDSTGGEAMQLIKRTYQPSLLRRKRAHGFLSRLKNRDGRKIL
ARRRAKNRTRMAV*

mRNA from alignment at scaffold_1:816619..817917-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1511 ID=mRNA_1511|Name=jgi.p|Nanoce1779_2|572477|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp|location=Sequence derived from alignment at scaffold_1:816619..817917- (Nannochloropsis oceanica)
CAGACCATCAGAGAGACATGACGCGACAGCGGGACTCGCCCAGGCCTTCG
AAAGACTTAATAACGTCCTATCTCGTTTGTCCGCCGAGTCTGCCGTGTAA
CTTTTTACTGAATGATGATTGAGATCATCGCTCCCGTGATGCGGGTGCTT
CCTCGTTATTGCTTGACAAGTCACGCACCACATTCCCGCACTCATGACAC
AACACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCATGGCCCGG
CGTGCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGTGCCGTGC
CGCCAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCTTTAACGT
GCTCCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATCCTCGTCC
TCATCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCCCGTCGTC
GTCGTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGCGATGAAG
CCAGTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGGGCCCTTC
TTCGACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGCTTCACAT
CCAGCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAAGAGAAAC
CGGACCCTATGATCGATGGTGCACGTATTGGTAAGTGAAAAGGCTTGGAG
GGGTGGCACTGAGGAGATGGGAGAAGGCAGGGCTAAATTATGCCCAGAGC
TGTGACGGACTCATTTGCTTGTTGTTACCTATACGTTGCCCAGATTTAAA
CTGCGACGTAATAAATCTGAGAGTTCACAAGCTCACCATATCCGCCTCCC
CCCAAAACAAAAATAGCACCCGCCTCATCCCCCCCCACCATGGTGCTGGA
AGAGGAGATTACAACGGACAGCACGGGTGGAGAGGCCATGCAGCTCATTA
AACGGACATATCAACCTAGTTTGCTCAGGCGTAAGCGAGCCCATGGCTTT
TTGAGTCGTCTTAAAAACAGGGACGGACGGAAAATTCTTGCGCGACGACG
AGCGAAGAATCGTACGCGAATGGCAGTTTAATGGAGATTGCGAGGGAGGA
TATGTGTATATAGGTTTAGAGTAGACGTTGGGGAGAAAGAGGGAGAGGTG
GTGGGATGGATAGTAAAGGAGGCGAAACACATGCCGAGACATTGAAGGAT
CAAAAATAAAGTCATCTAGACGGATTGCAGAGGTAGAAGAGTAAAGCAAG
GGAAGAGGAAGAATATAACAAAAAGAACAAATTCTTTTTCACACATTCA

Coding sequence (CDS) from alignment at scaffold_1:816619..817917-

>mRNA_1511 ID=mRNA_1511|Name=jgi.p|Nanoce1779_2|572477|organism=Nannochloropsis oceanica|type=CDS|length=192bp|location=Sequence derived from alignment at scaffold_1:816619..817917- (Nannochloropsis oceanica)
ATGGTGCTGGAAGAGGAGATTACAACGGACAGCACGGGTGGAGAGGCCAT
GCAGCTCATTAAACGGACATATCAACCTAGTTTGCTCAGGCGTAAGCGAG
CCCATGGCTTTTTGAGTCGTCTTAAAAACAGGGACGGACGGAAAATTCTT
GCGCGACGACGAGCGAAGAATCGTACGCGAATGGCAGTTTAA

Synonyms

Publications