jgi.p|Nanoce1779_2|667381, mRNA_1435 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667381
Unique Name	mRNA_1435
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3000
Alignment location	scaffold_1:542348..545347 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	667467
Track	FilteredModels2
ProteinId	667381

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:542348..545347 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667381	gene_1435	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667381	mRNA_1435-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1435	CDS_1435	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:542348..545347-
coding sequence from alignment at scaffold_1:542348..545347-

mRNA sequence

>mRNA_1435 ID=mRNA_1435|Name=jgi.p|Nanoce1779_2|667381|organism=Nannochloropsis oceanica|type=mRNA|length=3000bp
CGCGGAAAGTGCGGCCAGCGGTACGAAGCGCCTGACGAGCCGATAGCATC
ATCATGGTCGTGTCGTGTGGGGTCGAAACCTATGGATTCGTGTCGAAAGA
GGAAGAAGCAAGGGTCGAAGTTAATTAATGAGTGATGGGTGAAGTAAACG
AGGGCGCGGCTCCCTGCCCATGAAATAATAGGCATGGCGACGATGTGGGA
CTGTGAAGGCTTACTGAAGCAGTGGACAGAGTGCGGGCGTCATGCATGAG
GGCATGTGCATAGATTATCCTCATCAAGTCGATGGCAACGGACGATGAGA
TGACACACCCTTCGCTTCTTTTCACTTGCCTTTCTCGCGCGCATCGATCG
TTTATTTTCCATGCCTCTACTGTAACGCAACCGCTCCCCCCTCGTAGCAG
GAAGGCACATTAGGGTCCAATTCGCGCGGCCAGGGACTTGCAGCTTGGAG
CGAGCCATGCCCTTACCAGCAGCCCCACCCAGCAAAAAGAACAACACACT
CCCAAGCAGCAAAAAGAACAAAACGCAGCACGCACGCCCAGCCACAGTCG
TACTCCTTGCCGTGACTGCTGCCTTGGCGCTGCAGCCGCCTGTGGCTTTC
CGGCGATGGTGGTTGGACCGGAATGCCGTGCTGGAACTTCACCCGGACTG
CCAGACCACCGAAAACTATGCCTTGGGTGCCGGCTTCGACGTGCGCTGGG
ACCGAGGCTCCCTCAGCATCTGGAGGTCCTTACCAGAGGCATCATCATTA
CAAAAGCATTCTCTTTGGCATACATACGCCAAAGATAAGCCTTTCATACT
TGCAGGACGGGTGGTATTGGACGGTGACCCCATCCGAGACGGGCATTATT
TTCTCAAGCAACGCATCCTCCAAGAGACCAACAGGCAGACCGTCGAGGCC
TTAGTTTACGAGCCCTACATTTCTCTCACACTCACTGGCACGATTGACAG
CCCTGGATTTCCCTCTGTGTCTTATCGATTTATCTTGACCGTGGACGATG
CAAGTGAAACCGGCAAACTCCAATTTGCCCTCTTGCTGGGAGAGACGGCT
GAGGCGGACGAGGACGACGGCGACGAGGAGATGCTCTACGCAGCTGGTGG
TCCGCACACCAACCCACTTTCCCCTTCTTCTAGTGGGTCCTACTACAATC
GAATTTGGCTTCGTTACGGCTCGGAAAAAGACGAGGCCTTTTTCGGGTTT
GGCCAGCATTATTCCCGATGGAACCTGAAGGGAGATCTGGTCCCCGTTCT
GATCAGCGAGCAAGGGGTAGGGAGGGGCCTTCAACCACTCACATTCATAC
TTAACACCTTTGTGCACGGCGTTGGCTCTGCCTGGCACACCACCTATGTG
GCTAAGCCGATGTATATGACGAGTCATGGGCGGGCTTTATCGCTGAAAGG
ACCCAAAGTCTCTCTTTTTGATTTAACTTTACCCGACGTAGTGACAGTTG
AGTATTGGTCATGTAAATCCGTACGAGGGATTGTCTATAGTGCTGCTTCC
CCATTGGACACTATCACGTTGTTTACATCAGAAACTGGACGCATGCAGCC
GTTACCGGACTGGACTCAACAAGGTGTGATTGTTGGTTTGGAGGGGGGGT
CGGACGAAGTGGAGAATGTCACGGCCACGCTGTTGAAGTACGAGGTGCCG
TTGGTGGGGGTGTGGCTGCAGGACTGGGTTGGTACACGGCAGGACTGGGA
CGGGACGCGGTTGATCTGGAACTGGGAAGTGAATCGGCAGTATTATCCGA
GATGGGATAGTTACAGAGAGGGGTTGAAGAAGGAGGGAGGGAGGGAGGGA
GGGGTGAAAGTATTGACGTACATAAATCCGTATCTGGTTGATGTTGTTGG
TGATGGCGCGAGCAACAAAAGTTTCCCACATGAGCGGAATCTCTTTCGAG
AAGCGGTCGAGAACGGGTATTTAATCAAGAATGAGAATGGAGGGCCCCTC
ATAGCCAAGAGTGGAAGTATTGAGTTTGGGACCATCGACCCCACGAACCC
GGAGACGCGAGCATGGTTGAAAAAAGTCATCAAAACGTCACTGATTGATG
ACGCGGGCTCGGCGGGATGGATGGCAGATTTCGGGGAGTATGTTCCGTTT
CAGGCAAGGCTGGAGGGAGGCAGGGGGAATGTGATGCATAACGTTTTCCC
TGATTATTGGGCTAGCTTGCAGAAGGAGGCGATAGAGGAGGCGGGGAGAG
GGATGGAGGGGGGGAAGGCAGGAAGAGAAGTCGTGGCATTTGTGCGGTCG
GGTTACCTCAAGACACCTGGGGTCGCGCAATTGTACTGGGTGGGGGACCA
ACTAGTGACGTGGGACGGGCATGATGGGATAAAAACTGTGCTACCAGCCA
TGCTATCGGGGGGATTGGTGGGCAATAGCTTGAGCCATTCGGATGTAGGA
GGGTATACAATGATTGACCATGTGCTGTTCAAATTTTTTCGGCCACGGGA
GCTCCTGTTTCGCTGGGTGGAAATGGGGGCGTTTGCGGGGGTGATGTACC
GGACGCATTTGGGAAGTTTCATGCACACCCCGAGTGCGCAGGTTTGGGAT
GATGAGGAGAGTGTGCGTTTTTTGGGGAGGTTTGGAAGGGTTTTTGCTCA
CCTTGCGCCGTACCGAAAGGTCTTAATGGAGGAGGCTGCGAGGGACGGAT
GGCCCGTAGTCAGACCGTTGTTTTGCCATTTCCCGGGGGAGAAGGGTGTA
TGGAAGGTGGGGCAGCAATTTATGGTGGGGCCGGATTTGCTGGTGGCGCC
TGTTGTGGACCCGGGGAAGAGGACCTGGAGGGTGTACCTGCCCGGGGAAG
GAAGAGAGGGGGGCAGGGAAAGAGGGCTGGCGGTGGCATGGAGGCATGTG
TGGACGGGTCAGATTTATGAGAAGGGAGGCTGGGTGACGGTCAGGGCTGG
GCTGGGGGAGATACCGGTCTTCTGGAGAGTGGGCTCGAGGTGGGAGGGAT
TGTTTGAGGGATTGGCGGTTGCGTGAGAGGAGGAGGAAGGAGAGGAGAGG

protein sequence of jgi.p|Nanoce1779_2|667381

>mRNA_1435-protein ID=mRNA_1435-protein|Name=jgi.p|Nanoce1779_2|667381|organism=Nannochloropsis oceanica|type=polypeptide|length=840bp
MPLPAAPPSKKNNTLPSSKKNKTQHARPATVVLLAVTAALALQPPVAFRR
WWLDRNAVLELHPDCQTTENYALGAGFDVRWDRGSLSIWRSLPEASSLQK
HSLWHTYAKDKPFILAGRVVLDGDPIRDGHYFLKQRILQETNRQTVEALV
YEPYISLTLTGTIDSPGFPSVSYRFILTVDDASETGKLQFALLLGETAEA
DEDDGDEEMLYAAGGPHTNPLSPSSSGSYYNRIWLRYGSEKDEAFFGFGQ
HYSRWNLKGDLVPVLISEQGVGRGLQPLTFILNTFVHGVGSAWHTTYVAK
PMYMTSHGRALSLKGPKVSLFDLTLPDVVTVEYWSCKSVRGIVYSAASPL
DTITLFTSETGRMQPLPDWTQQGVIVGLEGGSDEVENVTATLLKYEVPLV
GVWLQDWVGTRQDWDGTRLIWNWEVNRQYYPRWDSYREGLKKEGGREGGV
KVLTYINPYLVDVVGDGASNKSFPHERNLFREAVENGYLIKNENGGPLIA
KSGSIEFGTIDPTNPETRAWLKKVIKTSLIDDAGSAGWMADFGEYVPFQA
RLEGGRGNVMHNVFPDYWASLQKEAIEEAGRGMEGGKAGREVVAFVRSGY
LKTPGVAQLYWVGDQLVTWDGHDGIKTVLPAMLSGGLVGNSLSHSDVGGY
TMIDHVLFKFFRPRELLFRWVEMGAFAGVMYRTHLGSFMHTPSAQVWDDE
ESVRFLGRFGRVFAHLAPYRKVLMEEAARDGWPVVRPLFCHFPGEKGVWK
VGQQFMVGPDLLVAPVVDPGKRTWRVYLPGEGREGGRERGLAVAWRHVWT
GQIYEKGGWVTVRAGLGEIPVFWRVGSRWEGLFEGLAVA*

mRNA from alignment at scaffold_1:542348..545347-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1435 ID=mRNA_1435|Name=jgi.p|Nanoce1779_2|667381|organism=Nannochloropsis oceanica|type=mRNA|length=3000bp|location=Sequence derived from alignment at scaffold_1:542348..545347- (Nannochloropsis oceanica)
CGCGGAAAGTGCGGCCAGCGGTACGAAGCGCCTGACGAGCCGATAGCATC
ATCATGGTCGTGTCGTGTGGGGTCGAAACCTATGGATTCGTGTCGAAAGA
GGAAGAAGCAAGGGTCGAAGTTAATTAATGAGTGATGGGTGAAGTAAACG
AGGGCGCGGCTCCCTGCCCATGAAATAATAGGCATGGCGACGATGTGGGA
CTGTGAAGGCTTACTGAAGCAGTGGACAGAGTGCGGGCGTCATGCATGAG
GGCATGTGCATAGATTATCCTCATCAAGTCGATGGCAACGGACGATGAGA
TGACACACCCTTCGCTTCTTTTCACTTGCCTTTCTCGCGCGCATCGATCG
TTTATTTTCCATGCCTCTACTGTAACGCAACCGCTCCCCCCTCGTAGCAG
GAAGGCACATTAGGGTCCAATTCGCGCGGCCAGGGACTTGCAGCTTGGAG
CGAGCCATGCCCTTACCAGCAGCCCCACCCAGCAAAAAGAACAACACACT
CCCAAGCAGCAAAAAGAACAAAACGCAGCACGCACGCCCAGCCACAGTCG
TACTCCTTGCCGTGACTGCTGCCTTGGCGCTGCAGCCGCCTGTGGCTTTC
CGGCGATGGTGGTTGGACCGGAATGCCGTGCTGGAACTTCACCCGGACTG
CCAGACCACCGAAAACTATGCCTTGGGTGCCGGCTTCGACGTGCGCTGGG
ACCGAGGCTCCCTCAGCATCTGGAGGTCCTTACCAGAGGCATCATCATTA
CAAAAGCATTCTCTTTGGCATACATACGCCAAAGATAAGCCTTTCATACT
TGCAGGACGGGTGGTATTGGACGGTGACCCCATCCGAGACGGGCATTATT
TTCTCAAGCAACGCATCCTCCAAGAGACCAACAGGCAGACCGTCGAGGCC
TTAGTTTACGAGCCCTACATTTCTCTCACACTCACTGGCACGATTGACAG
CCCTGGATTTCCCTCTGTGTCTTATCGATTTATCTTGACCGTGGACGATG
CAAGTGAAACCGGCAAACTCCAATTTGCCCTCTTGCTGGGAGAGACGGCT
GAGGCGGACGAGGACGACGGCGACGAGGAGATGCTCTACGCAGCTGGTGG
TCCGCACACCAACCCACTTTCCCCTTCTTCTAGTGGGTCCTACTACAATC
GAATTTGGCTTCGTTACGGCTCGGAAAAAGACGAGGCCTTTTTCGGGTTT
GGCCAGCATTATTCCCGATGGAACCTGAAGGGAGATCTGGTCCCCGTTCT
GATCAGCGAGCAAGGGGTAGGGAGGGGCCTTCAACCACTCACATTCATAC
TTAACACCTTTGTGCACGGCGTTGGCTCTGCCTGGCACACCACCTATGTG
GCTAAGCCGATGTATATGACGAGTCATGGGCGGGCTTTATCGCTGAAAGG
ACCCAAAGTCTCTCTTTTTGATTTAACTTTACCCGACGTAGTGACAGTTG
AGTATTGGTCATGTAAATCCGTACGAGGGATTGTCTATAGTGCTGCTTCC
CCATTGGACACTATCACGTTGTTTACATCAGAAACTGGACGCATGCAGCC
GTTACCGGACTGGACTCAACAAGGTGTGATTGTTGGTTTGGAGGGGGGGT
CGGACGAAGTGGAGAATGTCACGGCCACGCTGTTGAAGTACGAGGTGCCG
TTGGTGGGGGTGTGGCTGCAGGACTGGGTTGGTACACGGCAGGACTGGGA
CGGGACGCGGTTGATCTGGAACTGGGAAGTGAATCGGCAGTATTATCCGA
GATGGGATAGTTACAGAGAGGGGTTGAAGAAGGAGGGAGGGAGGGAGGGA
GGGGTGAAAGTATTGACGTACATAAATCCGTATCTGGTTGATGTTGTTGG
TGATGGCGCGAGCAACAAAAGTTTCCCACATGAGCGGAATCTCTTTCGAG
AAGCGGTCGAGAACGGGTATTTAATCAAGAATGAGAATGGAGGGCCCCTC
ATAGCCAAGAGTGGAAGTATTGAGTTTGGGACCATCGACCCCACGAACCC
GGAGACGCGAGCATGGTTGAAAAAAGTCATCAAAACGTCACTGATTGATG
ACGCGGGCTCGGCGGGATGGATGGCAGATTTCGGGGAGTATGTTCCGTTT
CAGGCAAGGCTGGAGGGAGGCAGGGGGAATGTGATGCATAACGTTTTCCC
TGATTATTGGGCTAGCTTGCAGAAGGAGGCGATAGAGGAGGCGGGGAGAG
GGATGGAGGGGGGGAAGGCAGGAAGAGAAGTCGTGGCATTTGTGCGGTCG
GGTTACCTCAAGACACCTGGGGTCGCGCAATTGTACTGGGTGGGGGACCA
ACTAGTGACGTGGGACGGGCATGATGGGATAAAAACTGTGCTACCAGCCA
TGCTATCGGGGGGATTGGTGGGCAATAGCTTGAGCCATTCGGATGTAGGA
GGGTATACAATGATTGACCATGTGCTGTTCAAATTTTTTCGGCCACGGGA
GCTCCTGTTTCGCTGGGTGGAAATGGGGGCGTTTGCGGGGGTGATGTACC
GGACGCATTTGGGAAGTTTCATGCACACCCCGAGTGCGCAGGTTTGGGAT
GATGAGGAGAGTGTGCGTTTTTTGGGGAGGTTTGGAAGGGTTTTTGCTCA
CCTTGCGCCGTACCGAAAGGTCTTAATGGAGGAGGCTGCGAGGGACGGAT
GGCCCGTAGTCAGACCGTTGTTTTGCCATTTCCCGGGGGAGAAGGGTGTA
TGGAAGGTGGGGCAGCAATTTATGGTGGGGCCGGATTTGCTGGTGGCGCC
TGTTGTGGACCCGGGGAAGAGGACCTGGAGGGTGTACCTGCCCGGGGAAG
GAAGAGAGGGGGGCAGGGAAAGAGGGCTGGCGGTGGCATGGAGGCATGTG
TGGACGGGTCAGATTTATGAGAAGGGAGGCTGGGTGACGGTCAGGGCTGG
GCTGGGGGAGATACCGGTCTTCTGGAGAGTGGGCTCGAGGTGGGAGGGAT
TGTTTGAGGGATTGGCGGTTGCGTGAGAGGAGGAGGAAGGAGAGGAGAGG

Coding sequence (CDS) from alignment at scaffold_1:542348..545347-

>mRNA_1435 ID=mRNA_1435|Name=jgi.p|Nanoce1779_2|667381|organism=Nannochloropsis oceanica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_1:542348..545347- (Nannochloropsis oceanica)
ATGCCCTTACCAGCAGCCCCACCCAGCAAAAAGAACAACACACTCCCAAG
CAGCAAAAAGAACAAAACGCAGCACGCACGCCCAGCCACAGTCGTACTCC
TTGCCGTGACTGCTGCCTTGGCGCTGCAGCCGCCTGTGGCTTTCCGGCGA
TGGTGGTTGGACCGGAATGCCGTGCTGGAACTTCACCCGGACTGCCAGAC
CACCGAAAACTATGCCTTGGGTGCCGGCTTCGACGTGCGCTGGGACCGAG
GCTCCCTCAGCATCTGGAGGTCCTTACCAGAGGCATCATCATTACAAAAG
CATTCTCTTTGGCATACATACGCCAAAGATAAGCCTTTCATACTTGCAGG
ACGGGTGGTATTGGACGGTGACCCCATCCGAGACGGGCATTATTTTCTCA
AGCAACGCATCCTCCAAGAGACCAACAGGCAGACCGTCGAGGCCTTAGTT
TACGAGCCCTACATTTCTCTCACACTCACTGGCACGATTGACAGCCCTGG
ATTTCCCTCTGTGTCTTATCGATTTATCTTGACCGTGGACGATGCAAGTG
AAACCGGCAAACTCCAATTTGCCCTCTTGCTGGGAGAGACGGCTGAGGCG
GACGAGGACGACGGCGACGAGGAGATGCTCTACGCAGCTGGTGGTCCGCA
CACCAACCCACTTTCCCCTTCTTCTAGTGGGTCCTACTACAATCGAATTT
GGCTTCGTTACGGCTCGGAAAAAGACGAGGCCTTTTTCGGGTTTGGCCAG
CATTATTCCCGATGGAACCTGAAGGGAGATCTGGTCCCCGTTCTGATCAG
CGAGCAAGGGGTAGGGAGGGGCCTTCAACCACTCACATTCATACTTAACA
CCTTTGTGCACGGCGTTGGCTCTGCCTGGCACACCACCTATGTGGCTAAG
CCGATGTATATGACGAGTCATGGGCGGGCTTTATCGCTGAAAGGACCCAA
AGTCTCTCTTTTTGATTTAACTTTACCCGACGTAGTGACAGTTGAGTATT
GGTCATGTAAATCCGTACGAGGGATTGTCTATAGTGCTGCTTCCCCATTG
GACACTATCACGTTGTTTACATCAGAAACTGGACGCATGCAGCCGTTACC
GGACTGGACTCAACAAGGTGTGATTGTTGGTTTGGAGGGGGGGTCGGACG
AAGTGGAGAATGTCACGGCCACGCTGTTGAAGTACGAGGTGCCGTTGGTG
GGGGTGTGGCTGCAGGACTGGGTTGGTACACGGCAGGACTGGGACGGGAC
GCGGTTGATCTGGAACTGGGAAGTGAATCGGCAGTATTATCCGAGATGGG
ATAGTTACAGAGAGGGGTTGAAGAAGGAGGGAGGGAGGGAGGGAGGGGTG
AAAGTATTGACGTACATAAATCCGTATCTGGTTGATGTTGTTGGTGATGG
CGCGAGCAACAAAAGTTTCCCACATGAGCGGAATCTCTTTCGAGAAGCGG
TCGAGAACGGGTATTTAATCAAGAATGAGAATGGAGGGCCCCTCATAGCC
AAGAGTGGAAGTATTGAGTTTGGGACCATCGACCCCACGAACCCGGAGAC
GCGAGCATGGTTGAAAAAAGTCATCAAAACGTCACTGATTGATGACGCGG
GCTCGGCGGGATGGATGGCAGATTTCGGGGAGTATGTTCCGTTTCAGGCA
AGGCTGGAGGGAGGCAGGGGGAATGTGATGCATAACGTTTTCCCTGATTA
TTGGGCTAGCTTGCAGAAGGAGGCGATAGAGGAGGCGGGGAGAGGGATGG
AGGGGGGGAAGGCAGGAAGAGAAGTCGTGGCATTTGTGCGGTCGGGTTAC
CTCAAGACACCTGGGGTCGCGCAATTGTACTGGGTGGGGGACCAACTAGT
GACGTGGGACGGGCATGATGGGATAAAAACTGTGCTACCAGCCATGCTAT
CGGGGGGATTGGTGGGCAATAGCTTGAGCCATTCGGATGTAGGAGGGTAT
ACAATGATTGACCATGTGCTGTTCAAATTTTTTCGGCCACGGGAGCTCCT
GTTTCGCTGGGTGGAAATGGGGGCGTTTGCGGGGGTGATGTACCGGACGC
ATTTGGGAAGTTTCATGCACACCCCGAGTGCGCAGGTTTGGGATGATGAG
GAGAGTGTGCGTTTTTTGGGGAGGTTTGGAAGGGTTTTTGCTCACCTTGC
GCCGTACCGAAAGGTCTTAATGGAGGAGGCTGCGAGGGACGGATGGCCCG
TAGTCAGACCGTTGTTTTGCCATTTCCCGGGGGAGAAGGGTGTATGGAAG
GTGGGGCAGCAATTTATGGTGGGGCCGGATTTGCTGGTGGCGCCTGTTGT
GGACCCGGGGAAGAGGACCTGGAGGGTGTACCTGCCCGGGGAAGGAAGAG
AGGGGGGCAGGGAAAGAGGGCTGGCGGTGGCATGGAGGCATGTGTGGACG
GGTCAGATTTATGAGAAGGGAGGCTGGGTGACGGTCAGGGCTGGGCTGGG
GGAGATACCGGTCTTCTGGAGAGTGGGCTCGAGGTGGGAGGGATTGTTTG
AGGGATTGGCGGTTGCGTGA

Synonyms

Publications