jgi.p|Nanoce1779_2|571979, mRNA_1400 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571979
Unique NamemRNA_1400
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1482
Alignment locationscaffold_1:466038..467856 -

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Properties
Property NameValue
TranscriptId572065
TrackFilteredModels2
ProteinId571979
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:466038..467856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571979gene_1400Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571979mRNA_1400-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1400CDS_1400Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1400 ID=mRNA_1400|Name=jgi.p|Nanoce1779_2|571979|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
CTTTGCAGCTCGGCCATCCTGCACAACCAAGATGAGCGCCGCCACAGAAG
ACAGCAGCAGCAGCAGCAGCATCAGCAGCAGCAGCGGCAACAGTGATGCT
GGTGTCTCTCGTAGGGATCTTGTCACGTCCACCACTGTCGCAGCTGCTGC
CCTTTCTGCCGTGAGTGTCATGGGTGCCTCCGCCCAACCGGCGGCTGCTG
CTTCCAATGCCGCCTGGGAGCAAGTGACTGATTTGCCCATGGGCGCAACA
TTGTACGACATGGACTTCGATTCCAAGGATCCGAACCACGGGTGGATTGT
TGGTTCGAAAGGTACATTTTTGGAGACGACCGACGCAGGTAAGACATGGG
TGCCTCGCTCTTTCGTTGACTTGGACCCCGACGAGGAAGTGACTTACCGC
TTCGAACGCGTTAGCTTCAAGGACGGCGAGGGGTGGATTATTGGGAAGCC
CCCAATTCTGTTGCACACTCAGGATTCAGGTAAGAGCTGGGAGCGTATTC
CCCTTTCTCCAAAGCTTCCCGGGGAGCCCTCCACTGTCTTTGCGACTGGG
CCCAATTCTGCGGAGATGACCACGTCCACCGGCGCAGTCTACAAAACTAC
AAACGCCGGGCGGAACTGGAAGGCACAGGTGAAGGAGACGATTGACGCCA
CTTTGAATCGAATTTCGGCCTCGGGTGTGCAGGGGGCTTCGTATTTCACG
GGTTCGATTATCTCGGTAGTGCGTGATGACATCACCGGGGCGTACCTCGC
CGTGTCCTCCCGTGGTAATTTCTTCTTGACCTGGGTCCCGGGGGATGATT
TCTGGGTTCCCCACAATAGAGGCACTAGCCGTCGGATTCAAAACATGGGA
TTTGTGAAAGGTGACAGCTCTCAGGGTGTGTGGATGAGCTTGAATGGCGG
CCTGTTGCAAGTGAGTGAGCCGGCGCAGGATTTGTCGTCGTCCGAAGACA
AGTTCAACTTCGCGGATAGTAAGATCCGCTCGGGGGGATATGGTATTCTG
GATGTGTGTTGGAAAGATGATCAGGAGGTGTGGGCTGTGGGAGGAGGAGG
ATCCATGTTCGTGTCGAAGGATGGAGGGAAGACGTTCACGTTCAATAAGA
GCGCAGACAATATTCCTGGCAACCTGTACAAGGTCAAGTTTTTCGGGGAC
AAGGGGTTTGTCTTGGGCTCGGAGGGAATCTTGCTGCGGTATAAGGGCAT
TGCGTAAGCACGACATTGAATAGGGGGATGGAGAGGGAAGGTGAACAGGA
GGAAGGAAGAGGGGAGCGTAGAGGAAGACTTTCGCGTATCATTTAAAGAG
CTTGTGTGTCGTGTGTGTTGTGTGTGTGGCATGTGAGATGCGAGACAAAA
GGCGAAGGTGAGAATGTGTCGTCGCATGAAAGAAGTGCACCATGCAGTGC
GTCTTATTATTTAGTGAAAAAACGGACGGACGATTGGAAGAAAGAAAGAA
AGAGTCACAACTCGCTGTGATACCTCGACCAA
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protein sequence of jgi.p|Nanoce1779_2|571979

>mRNA_1400-protein ID=mRNA_1400-protein|Name=jgi.p|Nanoce1779_2|571979|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MSAATEDSSSSSSISSSSGNSDAGVSRRDLVTSTTVAAAALSAVSVMGAS
AQPAAAASNAAWEQVTDLPMGATLYDMDFDSKDPNHGWIVGSKGTFLETT
DAGKTWVPRSFVDLDPDEEVTYRFERVSFKDGEGWIIGKPPILLHTQDSG
KSWERIPLSPKLPGEPSTVFATGPNSAEMTTSTGAVYKTTNAGRNWKAQV
KETIDATLNRISASGVQGASYFTGSIISVVRDDITGAYLAVSSRGNFFLT
WVPGDDFWVPHNRGTSRRIQNMGFVKGDSSQGVWMSLNGGLLQVSEPAQD
LSSSEDKFNFADSKIRSGGYGILDVCWKDDQEVWAVGGGGSMFVSKDGGK
TFTFNKSADNIPGNLYKVKFFGDKGFVLGSEGILLRYKGIA*
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mRNA from alignment at scaffold_1:466038..467856-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1400 ID=mRNA_1400|Name=jgi.p|Nanoce1779_2|571979|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp|location=Sequence derived from alignment at scaffold_1:466038..467856- (Nannochloropsis oceanica)
CTTTGCAGCTCGGCCATCCTGGTAAGTGGGTTGATGATGCTGTAGGGCAA
ATTTGATTGGATGGTAGAGCAACGAGTCAAGCACGCATGGCCTTGGCTTC
GTGAAATAATGACACAAGTATGTGTGAGGGTAGGAGTGGGCAAGCATTGT
CGTTGGTGGCTGGAAGGGGACAGGCAGCGCATCATCGACACGCTACTTAC
TTGAGTCTGTCATGCCACAACTTGCTCGGTACTTCTCAAATGAAAAAGTC
CCAACTCCAAAGAAGCACAAACCATCTTGAAAGAGACCTGAAAAATTGGT
TTTCGTATCGAAGAGATCAACCAAAAATCCACTCTATCCCTTTTCATCTC
TCCCATAGCACAACCAAGATGAGCGCCGCCACAGAAGACAGCAGCAGCAG
CAGCAGCATCAGCAGCAGCAGCGGCAACAGTGATGCTGGTGTCTCTCGTA
GGGATCTTGTCACGTCCACCACTGTCGCAGCTGCTGCCCTTTCTGCCGTG
AGTGTCATGGGTGCCTCCGCCCAACCGGCGGCTGCTGCTTCCAATGCCGC
CTGGGAGCAAGTGACTGATTTGCCCATGGGCGCAACATTGTACGACATGG
ACTTCGATTCCAAGGATCCGAACCACGGGTGGATTGTTGGTTCGAAAGGT
ACATTTTTGGAGACGACCGACGCAGGTAAGACATGGGTGCCTCGCTCTTT
CGTTGACTTGGACCCCGACGAGGAAGTGACTTACCGCTTCGAACGCGTTA
GCTTCAAGGACGGCGAGGGGTGGATTATTGGGAAGCCCCCAATTCTGTTG
CACACTCAGGATTCAGGTAAGAGCTGGGAGCGTATTCCCCTTTCTCCAAA
GCTTCCCGGGGAGCCCTCCACTGTCTTTGCGACTGGGCCCAATTCTGCGG
AGATGACCACGTCCACCGGCGCAGTCTACAAAACTACAAACGCCGGGCGG
AACTGGAAGGCACAGGTGAAGGAGACGATTGACGCCACTTTGAATCGAAT
TTCGGCCTCGGGTGTGCAGGGGGCTTCGTATTTCACGGGTTCGATTATCT
CGGTAGTGCGTGATGACATCACCGGGGCGTACCTCGCCGTGTCCTCCCGT
GGTAATTTCTTCTTGACCTGGGTCCCGGGGGATGATTTCTGGGTTCCCCA
CAATAGAGGCACTAGCCGTCGGATTCAAAACATGGGATTTGTGAAAGGTG
ACAGCTCTCAGGGTGTGTGGATGAGCTTGAATGGCGGCCTGTTGCAAGTG
AGTGAGCCGGCGCAGGATTTGTCGTCGTCCGAAGACAAGTTCAACTTCGC
GGATAGTAAGATCCGCTCGGGGGGATATGGTATTCTGGATGTGTGTTGGA
AAGATGATCAGGAGGTGTGGGCTGTGGGAGGAGGAGGATCCATGTTCGTG
TCGAAGGATGGAGGGAAGACGTTCACGTTCAATAAGAGCGCAGACAATAT
TCCTGGCAACCTGTACAAGGTCAAGTTTTTCGGGGACAAGGGGTTTGTCT
TGGGCTCGGAGGGAATCTTGCTGCGGTATAAGGGCATTGCGTAAGCACGA
CATTGAATAGGGGGATGGAGAGGGAAGGTGAACAGGAGGAAGGAAGAGGG
GAGCGTAGAGGAAGACTTTCGCGTATCATTTAAAGAGCTTGTGTGTCGTG
TGTGTTGTGTGTGTGGCATGTGAGATGCGAGACAAAAGGCGAAGGTGAGA
ATGTGTCGTCGCATGAAAGAAGTGCACCATGCAGTGCGTCTTATTATTTA
GTGAAAAAACGGACGGACGATTGGAAGAAAGAAAGAAAGAGTCACAACTC
GCTGTGATACCTCGACCAA
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Coding sequence (CDS) from alignment at scaffold_1:466038..467856-

>mRNA_1400 ID=mRNA_1400|Name=jgi.p|Nanoce1779_2|571979|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_1:466038..467856- (Nannochloropsis oceanica)
ATGAGCGCCGCCACAGAAGACAGCAGCAGCAGCAGCAGCATCAGCAGCAG
CAGCGGCAACAGTGATGCTGGTGTCTCTCGTAGGGATCTTGTCACGTCCA
CCACTGTCGCAGCTGCTGCCCTTTCTGCCGTGAGTGTCATGGGTGCCTCC
GCCCAACCGGCGGCTGCTGCTTCCAATGCCGCCTGGGAGCAAGTGACTGA
TTTGCCCATGGGCGCAACATTGTACGACATGGACTTCGATTCCAAGGATC
CGAACCACGGGTGGATTGTTGGTTCGAAAGGTACATTTTTGGAGACGACC
GACGCAGGTAAGACATGGGTGCCTCGCTCTTTCGTTGACTTGGACCCCGA
CGAGGAAGTGACTTACCGCTTCGAACGCGTTAGCTTCAAGGACGGCGAGG
GGTGGATTATTGGGAAGCCCCCAATTCTGTTGCACACTCAGGATTCAGGT
AAGAGCTGGGAGCGTATTCCCCTTTCTCCAAAGCTTCCCGGGGAGCCCTC
CACTGTCTTTGCGACTGGGCCCAATTCTGCGGAGATGACCACGTCCACCG
GCGCAGTCTACAAAACTACAAACGCCGGGCGGAACTGGAAGGCACAGGTG
AAGGAGACGATTGACGCCACTTTGAATCGAATTTCGGCCTCGGGTGTGCA
GGGGGCTTCGTATTTCACGGGTTCGATTATCTCGGTAGTGCGTGATGACA
TCACCGGGGCGTACCTCGCCGTGTCCTCCCGTGGTAATTTCTTCTTGACC
TGGGTCCCGGGGGATGATTTCTGGGTTCCCCACAATAGAGGCACTAGCCG
TCGGATTCAAAACATGGGATTTGTGAAAGGTGACAGCTCTCAGGGTGTGT
GGATGAGCTTGAATGGCGGCCTGTTGCAAGTGAGTGAGCCGGCGCAGGAT
TTGTCGTCGTCCGAAGACAAGTTCAACTTCGCGGATAGTAAGATCCGCTC
GGGGGGATATGGTATTCTGGATGTGTGTTGGAAAGATGATCAGGAGGTGT
GGGCTGTGGGAGGAGGAGGATCCATGTTCGTGTCGAAGGATGGAGGGAAG
ACGTTCACGTTCAATAAGAGCGCAGACAATATTCCTGGCAACCTGTACAA
GGTCAAGTTTTTCGGGGACAAGGGGTTTGTCTTGGGCTCGGAGGGAATCT
TGCTGCGGTATAAGGGCATTGCGTAA
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Synonyms
Publications