jgi.p|Nanoce1779_2|571979, gene_1400 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571979
Unique Namegene_1400
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:466038..467856 -

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Properties
Property NameValue
TranscriptId572065
ProteinId571979
Product namePhotosynthesis system II assembly factor Ycf48/Hcf136-like domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:466038..467856 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL001ncniL001Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02140NO03G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571979mRNA_1400-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571979mRNA_1400Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|571979

>mRNA_1400-protein ID=mRNA_1400-protein|Name=jgi.p|Nanoce1779_2|571979|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MSAATEDSSSSSSISSSSGNSDAGVSRRDLVTSTTVAAAALSAVSVMGAS
AQPAAAASNAAWEQVTDLPMGATLYDMDFDSKDPNHGWIVGSKGTFLETT
DAGKTWVPRSFVDLDPDEEVTYRFERVSFKDGEGWIIGKPPILLHTQDSG
KSWERIPLSPKLPGEPSTVFATGPNSAEMTTSTGAVYKTTNAGRNWKAQV
KETIDATLNRISASGVQGASYFTGSIISVVRDDITGAYLAVSSRGNFFLT
WVPGDDFWVPHNRGTSRRIQNMGFVKGDSSQGVWMSLNGGLLQVSEPAQD
LSSSEDKFNFADSKIRSGGYGILDVCWKDDQEVWAVGGGGSMFVSKDGGK
TFTFNKSADNIPGNLYKVKFFGDKGFVLGSEGILLRYKGIA*
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Synonyms
Publications