jgi.p|Nanoce1779_2|516897, mRNA_1385 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|516897
Unique NamemRNA_1385
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length324
Alignment locationscaffold_1:438333..438656 -

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Properties
Property NameValue
TranscriptId516983
TrackFilteredModels2
ProteinId516897
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:438333..438656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|516897gene_1385Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1385CDS_1385Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|516897mRNA_1385-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1385 ID=mRNA_1385|Name=jgi.p|Nanoce1779_2|516897|organism=Nannochloropsis oceanica|type=mRNA|length=324bp
TCCGCCCCCGCTACCGGCGGTGTGAAGAAGCCCCACCGTTACCGCCCGGG
GACGGTCGCCCTGCGCGAGATTCGCCGCTACCAGAAGAGCACGGAGCTCC
TCATCCGCAAGTTGCCCTTCCAGCGCCTGGTCCGTGAGATCGCCCAGGAT
TTCAAGACCGACCTGCGCTTCCAGGGCTCTGCCGTGCTCGCTTTGCAGGA
GGCCACCGAGGCTTACCTCGTGGGTCTCTTCGAGGACACCAACCTGGCTG
CCATCCACGCTAAGCGTGTGACCATCATGCCCAAGGACGTGCAGCTTGCC
CGCCGCATCCGCGGGGAGCGATCT
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protein sequence of jgi.p|Nanoce1779_2|516897

>mRNA_1385-protein ID=mRNA_1385-protein|Name=jgi.p|Nanoce1779_2|516897|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
SAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQD
FKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLA
RRIRGERS
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mRNA from alignment at scaffold_1:438333..438656-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1385 ID=mRNA_1385|Name=jgi.p|Nanoce1779_2|516897|organism=Nannochloropsis oceanica|type=mRNA|length=324bp|location=Sequence derived from alignment at scaffold_1:438333..438656- (Nannochloropsis oceanica)
TCCGCCCCCGCTACCGGCGGTGTGAAGAAGCCCCACCGTTACCGCCCGGG
GACGGTCGCCCTGCGCGAGATTCGCCGCTACCAGAAGAGCACGGAGCTCC
TCATCCGCAAGTTGCCCTTCCAGCGCCTGGTCCGTGAGATCGCCCAGGAT
TTCAAGACCGACCTGCGCTTCCAGGGCTCTGCCGTGCTCGCTTTGCAGGA
GGCCACCGAGGCTTACCTCGTGGGTCTCTTCGAGGACACCAACCTGGCTG
CCATCCACGCTAAGCGTGTGACCATCATGCCCAAGGACGTGCAGCTTGCC
CGCCGCATCCGCGGGGAGCGATCT
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Coding sequence (CDS) from alignment at scaffold_1:438333..438656-

>mRNA_1385 ID=mRNA_1385|Name=jgi.p|Nanoce1779_2|516897|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_1:438333..438656- (Nannochloropsis oceanica)
TCCGCCCCCGCTACCGGCGGTGTGAAGAAGCCCCACCGTTACCGCCCGGG
GACGGTCGCCCTGCGCGAGATTCGCCGCTACCAGAAGAGCACGGAGCTCC
TCATCCGCAAGTTGCCCTTCCAGCGCCTGGTCCGTGAGATCGCCCAGGAT
TTCAAGACCGACCTGCGCTTCCAGGGCTCTGCCGTGCTCGCTTTGCAGGA
GGCCACCGAGGCTTACCTCGTGGGTCTCTTCGAGGACACCAACCTGGCTG
CCATCCACGCTAAGCGTGTGACCATCATGCCCAAGGACGTGCAGCTTGCC
CGCCGCATCCGCGGGGAGCGATCT
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Synonyms
Publications